View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9753_low_16 (Length: 381)
Name: NF9753_low_16
Description: NF9753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9753_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 362; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 1 - 374
Target Start/End: Original strand, 34658347 - 34658720
Alignment:
| Q |
1 |
ctgagattaatgtggctataatgttgattataaatccaattcccattctttgtatgcacgtgattccaaccggattatttgtgaatttacggacgattgg |
100 |
Q |
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| T |
34658347 |
ctgagattaatgtggctataatgttgattataaatccaattcccattctttgtatgcacgtgattccaaccggattatttgtgaatttacggacgattgg |
34658446 |
T |
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| Q |
101 |
gacgaatacgcgttcataaagaattactcctgccatcatggttacaacactgaaaactgacatgttggctggtgaaatttgaaatgtgggagagaggtga |
200 |
Q |
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| T |
34658447 |
gatgaatacgcgttcataaagaattactcctgccatcatggttacaacactgaaaactgacatgttggctggtgaaatttgaaatgtgtgagagaggtga |
34658546 |
T |
|
| Q |
201 |
cggtccattgttcgagcttgttcgatgacgaaactaggaaggtgtgctgacgcagctataagtaaaattcctgatgctgaaattggaaggattctgatga |
300 |
Q |
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| T |
34658547 |
cggtccattgttcgagcttgttcgatgacgaaactaggaaggtgtgctgaggcagctataagtaaaattcctgatgctgaaattggaaggattctgatga |
34658646 |
T |
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| Q |
301 |
tggattttaactcctcaactctatggacagtggctaatttccaaaagtttgatggtgcatttggttctgtgctc |
374 |
Q |
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| T |
34658647 |
tggattttaactcctcaactctatggacagtggctaatttccaaaagtttgatggtgcatttggttctgtgctc |
34658720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 12 - 351
Target Start/End: Original strand, 34665031 - 34665370
Alignment:
| Q |
12 |
gtggctataatgttgattataaatccaattcccattctttgtatgcacgtgattccaaccggattatttgtgaatttacggacgattgggacgaatacgc |
111 |
Q |
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| T |
34665031 |
gtggctataatgttaatcacaaagcctattcccattctttgcaaacatgtgattccagcaggattctttgtgaatctacggatgaatggaacgaataagc |
34665130 |
T |
|
| Q |
112 |
gttcataaagaattactcctgccatcatggttacaacactgaaaactgacatgttggctggtgaaatttgaaatgtgggagagaggtgacggtccattgt |
211 |
Q |
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| T |
34665131 |
gttcgtatagaataacacctgtcatcatggttagcacgctgaaaattgccatactggccggtgaaatttcgaatgtgtgagagaggtgacgatccattgt |
34665230 |
T |
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| Q |
212 |
tcgagcttgttcgatgacgaaactaggaaggtgtgctgacgcagctataagtaaaattcctgatgctgaaattggaaggattctgatgatggattttaac |
311 |
Q |
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| T |
34665231 |
acgagcttgtacaatcacaaaactatgttgagatgatgatgcagttatgagtagaattcctgatgcccaaattggaagcattctaaccaggcattttaac |
34665330 |
T |
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| Q |
312 |
tcctcaactctatggacagtggctaatttccaaaagtttg |
351 |
Q |
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| T |
34665331 |
tcttcaactctatggacagtggctaagttccataagtttg |
34665370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 41 - 363
Target Start/End: Original strand, 34645360 - 34645682
Alignment:
| Q |
41 |
tcccattctttgtatgcacgtgattccaaccggattatttgtgaatttacggacgattgggacgaatacgcgttcataaagaattactcctgccatcatg |
140 |
Q |
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| T |
34645360 |
tcccattctttgtaaacatgtgattccagcaggattctttgtgaatctacgggcgaatggaacgaaaaagcgttcatatagcataactcctatcatcatg |
34645459 |
T |
|
| Q |
141 |
gttacaacactgaaaactgacatgttggctggtgaaatttgaaatgtgggagagaggtgacggtccattgttcgagcttgttcgatgacgaaactaggaa |
240 |
Q |
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| T |
34645460 |
gttaggacaccaaaaattgacatattggctggtgcaatttggaatgaatgagtgaggtgacggtccatcgaacgagcttgttgaatgacaaaactaccta |
34645559 |
T |
|
| Q |
241 |
ggtgtgctgacgcagctataagtaaaattcctgatgctgaaattggaaggattctgatgatggattttaactcctcaactctatggacagtggctaattt |
340 |
Q |
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| T |
34645560 |
aatgtgatgaagacattatgagcaaaattcctgaagcccaaattggaagcattctgatgatagctttcagttcctcaactctatggacagtgactaaatt |
34645659 |
T |
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| Q |
341 |
ccaaaagtttgatggtgcatttg |
363 |
Q |
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| T |
34645660 |
ccaaaggtttggtggtgcatttg |
34645682 |
T |
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