View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9753_low_17 (Length: 374)

Name: NF9753_low_17
Description: NF9753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9753_low_17
NF9753_low_17
[»] chr6 (7 HSPs)
chr6 (19-316)||(14861291-14861588)
chr6 (19-148)||(14865685-14865820)
chr6 (79-225)||(25358731-25358868)
chr6 (188-232)||(14865640-14865684)
chr6 (285-322)||(9024176-9024213)
chr6 (291-323)||(9750448-9750480)
chr6 (285-333)||(12235509-12235556)
[»] chr8 (2 HSPs)
chr8 (116-358)||(35144489-35144731)
chr8 (19-88)||(35144421-35144490)
[»] chr2 (6 HSPs)
chr2 (285-327)||(18570994-18571036)
chr2 (285-321)||(37402085-37402121)
chr2 (285-315)||(4229415-4229445)
chr2 (289-327)||(31808103-31808141)
chr2 (289-327)||(34993977-34994015)
chr2 (289-321)||(18889592-18889624)
[»] chr1 (5 HSPs)
chr1 (285-330)||(30847712-30847757)
chr1 (289-322)||(7918211-7918244)
chr1 (289-322)||(20157350-20157383)
chr1 (289-322)||(21038109-21038142)
chr1 (289-322)||(25361912-25361945)
[»] chr3 (4 HSPs)
chr3 (285-321)||(20691341-20691377)
chr3 (285-322)||(4704292-4704329)
chr3 (283-315)||(3730172-3730204)
chr3 (290-322)||(29386511-29386543)
[»] chr4 (2 HSPs)
chr4 (285-320)||(18513243-18513278)
chr4 (290-322)||(6933302-6933334)
[»] chr7 (3 HSPs)
chr7 (289-327)||(4909177-4909215)
chr7 (289-322)||(18013074-18013107)
chr7 (291-328)||(18226972-18227009)
[»] scaffold0049 (1 HSPs)
scaffold0049 (285-322)||(56944-56981)


Alignment Details
Target: chr6 (Bit Score: 286; Significance: 1e-160; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 19 - 316
Target Start/End: Complemental strand, 14861588 - 14861291
Alignment:
Q  19 tcttcgtcaaatttcaattaatggatattgattattatgatggtcatgatcattaagagattgatgaaaaaagctgcttagtaaaataggaattaggaac 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14861588 tcttcgtcaaatttcaattaatggatattgattattatgatggtcatgatcattaagagattgatgaaaaaagctgcttagtaaaataggaattaggaac 14861489  T
Q  119 aactttagatttggatttcattgagtttagttcgagatacaaaatgttgagacatgagaatgttgaaaaatggatgagatattatagtcttgtatggcac 218  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14861488 aactttagatttggatttcattgagtttagttggagatacaaaatgttgagacatgagaatgttgaaaaatggatgagatattatagtcttgtatggcac 14861389  T
Q  219 ttttattctatgaaacataaacacagacatcagacatgacacaaacaacgaaatgcagacaccaataatgacataattcagtgtaatcatatgtgtca 316  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  14861388 ttttattctatgaaacataaacacagacaccagacatgacacaaacaacgaaatgcagacaccgataatgacataattcagtgtaatcatatgtgtca 14861291  T

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Target: chr6; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 19 - 148
Target Start/End: Complemental strand, 14865820 - 14865685
Alignment:
Q  19 tcttcgtcaaatttcaattaatggatat----tgattattat--gatggtcatgatcattaagagattgatgaaaaaagctgcttagtaaaataggaatt 112  Q
    ||||| |||||||||||||| |||||||    ||||||||||  |||| ||||||||||||||| ||||||||||||| ||||||||||| |||||||||    
T  14865820 tcttcatcaaatttcaattagtggatatatattgattattatttgatgatcatgatcattaagaaattgatgaaaaaaactgcttagtaagataggaatt 14865721  T
Q  113 aggaacaactttagatttggatttcattgagtttag 148  Q
    ||||||||||||| ||||||||||||||||||||||    
T  14865720 aggaacaactttacatttggatttcattgagtttag 14865685  T

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Target: chr6; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 79 - 225
Target Start/End: Complemental strand, 25358868 - 25358731
Alignment:
Q  79 ttgatgaaaaaagctgcttagtaaaataggaattaggaacaactttagatttggatttcattgagtttagttcgagatacaaaatgttgagacatgagaa 178  Q
    |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||     || |||||||||||||        ||    
T  25358868 ttgatgaaaaaa-ctgcttagtaagataggaattaggaacaactttagatttggatttaattgagtgtaacagaagttacaaaatgttga--------aa 25358778  T
Q  179 tgttgaaaaatggatgagatattatagtcttgtatggcacttttatt 225  Q
     ||||||| ||| ||||||||||||||||||||| | ||||||||||    
T  25358777 cgttgaaagatgaatgagatattatagtcttgtacgacacttttatt 25358731  T

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Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 188 - 232
Target Start/End: Complemental strand, 14865684 - 14865640
Alignment:
Q  188 atggatgagatattatagtcttgtatggcacttttattctatgaa 232  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  14865684 atggatgagatattatagtcttgtatggcacttttattctatgaa 14865640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 285 - 322
Target Start/End: Complemental strand, 9024213 - 9024176
Alignment:
Q  285 aatgacataattcagtgtaatcatatgtgtcagtgtcg 322  Q
    |||||||||||||| |||||||||||||||||||||||    
T  9024213 aatgacataattcaatgtaatcatatgtgtcagtgtcg 9024176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 323
Target Start/End: Complemental strand, 9750480 - 9750448
Alignment:
Q  291 ataattcagtgtaatcatatgtgtcagtgtcga 323  Q
    ||||||||||||||| |||||||||||||||||    
T  9750480 ataattcagtgtaattatatgtgtcagtgtcga 9750448  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 333
Target Start/End: Complemental strand, 12235556 - 12235509
Alignment:
Q  285 aatgacataattcagtgtaatcatatgtgtcagtgtcgaacaccgacgt 333  Q
    ||||||||||||||||||||||||| ||||| |||||  ||||||||||    
T  12235556 aatgacataattcagtgtaatcataggtgtc-gtgtccgacaccgacgt 12235509  T

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Target: chr8 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 116 - 358
Target Start/End: Original strand, 35144489 - 35144731
Alignment:
Q  116 aacaactttagatttggatttcattgagtttagttcgagatacaaaatgttgagacatgagaatgttgaaaaatggatgagatattatagtcttgtatgg 215  Q
    ||||||||||||||||||||||||||||| ||||| ||| ||||| |||||||||||   ||||||||||| ||||| ||||| |||||||||| |||||    
T  35144489 aacaactttagatttggatttcattgagtctagttggagttacaagatgttgagaca---gaatgttgaaagatggacgagatgttatagtcttatatgg 35144585  T
Q  216 cacttttattctatgaaacataaacacagacatcagacatgacacaaacaacgaaatgcagacaccaataatgacataattcagtgtaatcatatg---t 312  Q
     |||||||||||||||| || ||||| ||| | | |||| |||||||||| ||||| || |||||| | |||||||||||||||| ||||||||||   |    
T  35144586 tacttttattctatgaagcacaaacatagagaccggacacgacacaaacatcgaaacgctgacaccgacaatgacataattcagtctaatcatatgcgtt 35144685  T
Q  313 gtcagtgtcgaacaccgacgtcaggatacacataattcgaggagtg 358  Q
    ||  |||| | ||||||||||||||| |||| |||| |||||||||    
T  35144686 gttggtgttggacaccgacgtcaggacacacctaatccgaggagtg 35144731  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 35144421 - 35144490
Alignment:
Q  19 tcttcgtcaaatttcaattaatggatattgattattatgatggtcatgatcattaagagattgatgaaaa 88  Q
    ||||| || ||||||||||| ||||||||||||||||||||| |||||||||||||  ||||||||||||    
T  35144421 tcttcatcgaatttcaattagtggatattgattattatgatgatcatgatcattaactgattgatgaaaa 35144490  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 285 - 327
Target Start/End: Original strand, 18570994 - 18571036
Alignment:
Q  285 aatgacataattcagtgtaatcatatgtgtcagtgtcgaacac 327  Q
    |||||||||||||| ||||||||||||||||||||||||||||    
T  18570994 aatgacataattcaatgtaatcatatgtgtcagtgtcgaacac 18571036  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 285 - 321
Target Start/End: Complemental strand, 37402121 - 37402085
Alignment:
Q  285 aatgacataattcagtgtaatcatatgtgtcagtgtc 321  Q
    |||||||||||||| ||||||||||||||||||||||    
T  37402121 aatgacataattcaatgtaatcatatgtgtcagtgtc 37402085  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 285 - 315
Target Start/End: Complemental strand, 4229445 - 4229415
Alignment:
Q  285 aatgacataattcagtgtaatcatatgtgtc 315  Q
    |||||||||||||||||||||||||||||||    
T  4229445 aatgacataattcagtgtaatcatatgtgtc 4229415  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 289 - 327
Target Start/End: Original strand, 31808103 - 31808141
Alignment:
Q  289 acataattcagtgtaatcatatgtgtcagtgtcgaacac 327  Q
    ||||||||||||||||| |||||||||||||| ||||||    
T  31808103 acataattcagtgtaattatatgtgtcagtgttgaacac 31808141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 289 - 327
Target Start/End: Complemental strand, 34994015 - 34993977
Alignment:
Q  289 acataattcagtgtaatcatatgtgtcagtgtcgaacac 327  Q
    |||||||||| |||||| |||||||||||||||||||||    
T  34994015 acataattcaatgtaattatatgtgtcagtgtcgaacac 34993977  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 321
Target Start/End: Complemental strand, 18889624 - 18889592
Alignment:
Q  289 acataattcagtgtaatcatatgtgtcagtgtc 321  Q
    ||||||||||||||||||||||||||| |||||    
T  18889624 acataattcagtgtaatcatatgtgtcggtgtc 18889592  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 285 - 330
Target Start/End: Complemental strand, 30847757 - 30847712
Alignment:
Q  285 aatgacataattcagtgtaatcatatgtgtcagtgtcgaacaccga 330  Q
    |||||||||||||| ||||||||||||||||||||| |||||||||    
T  30847757 aatgacataattcaatgtaatcatatgtgtcagtgttgaacaccga 30847712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 322
Target Start/End: Complemental strand, 7918244 - 7918211
Alignment:
Q  289 acataattcagtgtaatcatatgtgtcagtgtcg 322  Q
    ||||||||||||||||| ||||||||||||||||    
T  7918244 acataattcagtgtaattatatgtgtcagtgtcg 7918211  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 322
Target Start/End: Complemental strand, 20157383 - 20157350
Alignment:
Q  289 acataattcagtgtaatcatatgtgtcagtgtcg 322  Q
    ||||||||||||||||||||||||||| ||||||    
T  20157383 acataattcagtgtaatcatatgtgtcggtgtcg 20157350  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 322
Target Start/End: Original strand, 21038109 - 21038142
Alignment:
Q  289 acataattcagtgtaatcatatgtgtcagtgtcg 322  Q
    ||||||||||||||||||||||| ||||||||||    
T  21038109 acataattcagtgtaatcatatgcgtcagtgtcg 21038142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 322
Target Start/End: Original strand, 25361912 - 25361945
Alignment:
Q  289 acataattcagtgtaatcatatgtgtcagtgtcg 322  Q
    ||||||||||||||||| ||||||||||||||||    
T  25361912 acataattcagtgtaattatatgtgtcagtgtcg 25361945  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 285 - 321
Target Start/End: Original strand, 20691341 - 20691377
Alignment:
Q  285 aatgacataattcagtgtaatcatatgtgtcagtgtc 321  Q
    ||||||||||||||||||||||||||||||| |||||    
T  20691341 aatgacataattcagtgtaatcatatgtgtcggtgtc 20691377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 322
Target Start/End: Complemental strand, 4704329 - 4704292
Alignment:
Q  285 aatgacataattcagtgtaatcatatgtgtcagtgtcg 322  Q
    ||||||||||||||||||||||||||||| || |||||    
T  4704329 aatgacataattcagtgtaatcatatgtgccattgtcg 4704292  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 315
Target Start/End: Complemental strand, 3730204 - 3730172
Alignment:
Q  283 ataatgacataattcagtgtaatcatatgtgtc 315  Q
    ||||||||||||||||||||||||||| |||||    
T  3730204 ataatgacataattcagtgtaatcataggtgtc 3730172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 322
Target Start/End: Complemental strand, 29386543 - 29386511
Alignment:
Q  290 cataattcagtgtaatcatatgtgtcagtgtcg 322  Q
    |||||||||||||||||||||||||| ||||||    
T  29386543 cataattcagtgtaatcatatgtgtcggtgtcg 29386511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 285 - 320
Target Start/End: Complemental strand, 18513278 - 18513243
Alignment:
Q  285 aatgacataattcagtgtaatcatatgtgtcagtgt 320  Q
    |||||||||||||| |||||||||||||||||||||    
T  18513278 aatgacataattcaatgtaatcatatgtgtcagtgt 18513243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 322
Target Start/End: Original strand, 6933302 - 6933334
Alignment:
Q  290 cataattcagtgtaatcatatgtgtcagtgtcg 322  Q
    ||||||||||| |||||||||||||||||||||    
T  6933302 cataattcagtttaatcatatgtgtcagtgtcg 6933334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 289 - 327
Target Start/End: Original strand, 4909177 - 4909215
Alignment:
Q  289 acataattcagtgtaatcatatgtgtcagtgtcgaacac 327  Q
    |||||||||| ||||||||||||||||||||||| ||||    
T  4909177 acataattcattgtaatcatatgtgtcagtgtcggacac 4909215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 322
Target Start/End: Complemental strand, 18013107 - 18013074
Alignment:
Q  289 acataattcagtgtaatcatatgtgtcagtgtcg 322  Q
    ||||||||||||||||| ||||||||||||||||    
T  18013107 acataattcagtgtaattatatgtgtcagtgtcg 18013074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 328
Target Start/End: Original strand, 18226972 - 18227009
Alignment:
Q  291 ataattcagtgtaatcatatgtgtcagtgtcgaacacc 328  Q
    |||||||||| |||||||||||||| ||||||||||||    
T  18226972 ataattcagtataatcatatgtgtcggtgtcgaacacc 18227009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 322
Target Start/End: Original strand, 56944 - 56981
Alignment:
Q  285 aatgacataattcagtgtaatcatatgtgtcagtgtcg 322  Q
    ||||| ||||||||||||||||||| ||||||||||||    
T  56944 aatgatataattcagtgtaatcataagtgtcagtgtcg 56981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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