View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9753_low_19 (Length: 373)
Name: NF9753_low_19
Description: NF9753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9753_low_19 |
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Alignment Details
Target: chr6 (Bit Score: 306; Significance: 1e-172; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 18 - 363
Target Start/End: Complemental strand, 3585742 - 3585397
Alignment:
| Q |
18 |
ataaggacctctagttttccttgttggaatcacatataaatagtatctaccatgcatcatcaacaatcatcctcttaccttatcaaaaataaataatcct |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3585742 |
ataaggacctctagttttccttgttggaatcacatataaatagtatccaccatgcatcatcaacaatcatcctcttaccttatcaaaaataaataatcct |
3585643 |
T |
|
| Q |
118 |
cctcttcattttcaatagtactactcgtttgtttaacttagttgccaaaaaatactacaatggctgcttcaacaatggctctctcatcttcatcaatggt |
217 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3585642 |
cctcttcattttcaatagaactactcgtttgtttaacttagttaccaaaaaatactacaatggctgcttcaacaatggctctctcatcttcatcaatggt |
3585543 |
T |
|
| Q |
218 |
tggaaaggaaatcaagctttccccttccactccagaccttgtgatgggaagaatcatcatgaggaaaacaaccaccaagaagacctcttcttctggaagc |
317 |
Q |
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|||||||| |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || ||||||||||| |
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| T |
3585542 |
tggaaaggcaatcaagctttccccttcgactccagaccttgtgatgggaagaatcaccatgaggaaaacaaccaccaagaagactgctccttctggaagc |
3585443 |
T |
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| Q |
318 |
tagtggtacggtccagaccgtgtcaagtacttgggtccattctctg |
363 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3585442 |
cagtggtacggtccagaccgtgtcaagtacttgggtccattctctg |
3585397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 117 - 363
Target Start/End: Original strand, 3575572 - 3575821
Alignment:
| Q |
117 |
tcctcttcattttcaatagtactactcgtttg--tttaacttagttgccaa-aaaatactacaatggctgcttcaacaatggctctctcatcttcatcaa |
213 |
Q |
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||||||||||||||||||| ||| | |||| ||||||| |||||| || ||||||||| ||||||| | ||||||||||||||||| |||||| ||| |
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| T |
3575572 |
tcctcttcattttcaatagagctatttatttgcatttaactaagttgcaaataaaatactagaatggctacatcaacaatggctctctcttcttcaacaa |
3575671 |
T |
|
| Q |
214 |
tggttggaaaggaaatcaagctttccccttccactccagaccttgtgatgggaagaatcatcatgaggaaaacaaccaccaagaagacctcttcttctgg |
313 |
Q |
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||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| | ||||||| |
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| T |
3575672 |
tggttgggaaggcaatcaagctttccccttccactccagaccttgtgatgggaagaatcaccatgaggaaaacaaccaacaagaagaacgtcccttctgg |
3575771 |
T |
|
| Q |
314 |
aagctagtggtacggtccagaccgtgtcaagtacttgggtccattctctg |
363 |
Q |
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|||| ||||||||||||||| |||||||| ||||||||||||||||||| |
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| T |
3575772 |
aagcccgtggtacggtccagatcgtgtcaaatacttgggtccattctctg |
3575821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 166 - 363
Target Start/End: Original strand, 3572340 - 3572537
Alignment:
| Q |
166 |
aaaatactacaatggctgcttcaacaatggctctctcatcttcatcaatggttggaaaggaaatcaagctttccccttccactccagaccttgtgatggg |
265 |
Q |
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||||| |||| |||||||||||||||||| ||||||| ||||||||| ||||||| |||| ||||||||||||||| || |||||||||||||| ||||| |
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| T |
3572340 |
aaaattctaccatggctgcttcaacaatgtctctctcttcttcatcattggttgggaaggcaatcaagctttccccctctactccagaccttgtcatggg |
3572439 |
T |
|
| Q |
266 |
aagaatcatcatgaggaaaacaaccaccaagaagacctcttcttctggaagctagtggtacggtccagaccgtgtcaagtacttgggtccattctctg |
363 |
Q |
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|||||| | |||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3572440 |
aagaattaccatgaggaaaacaaccaccaagaagaatgttccttctggaagcccatggtacggtccagaccgtgtcaagtacttgggtccattctctg |
3572537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 164 - 361
Target Start/End: Original strand, 3569291 - 3569488
Alignment:
| Q |
164 |
aaaaaatactacaatggctgcttcaacaatggctctctcatcttcatcaatggttggaaaggaaatcaagctttccccttccactccagaccttgtgatg |
263 |
Q |
| |
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||||||||| ||||||||||||||||||||| | ||||| ||||||||| | || || |||| |||||| |||||||| ||||||| |||| ||| | || |
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| T |
3569291 |
aaaaaataccacaatggctgcttcaacaatgtccctctcttcttcatcatttgtcgggaaggcaatcaaactttccccatccactcaagacattggggtg |
3569390 |
T |
|
| Q |
264 |
ggaagaatcatcatgaggaaaacaaccaccaagaagacctcttcttctggaagctagtggtacggtccagaccgtgtcaagtacttgggtccattctc |
361 |
Q |
| |
|
|||||| ||| |||||||||||||||||||||||| || | | ||||||||| |||||||||||||||||||| ||||||||||| |||||||| |
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|
| T |
3569391 |
ggaagagtcacaatgaggaaaacaaccaccaagaagtccgttccgtctggaagcccatggtacggtccagaccgtgtgaagtacttgggcccattctc |
3569488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 166 - 361
Target Start/End: Original strand, 3563645 - 3563840
Alignment:
| Q |
166 |
aaaatactacaatggctgcttcaacaatggctctctcatcttcatcaatggttggaaaggaaatcaagctttccccttccactccagaccttgtgatggg |
265 |
Q |
| |
|
||||||||| |||||| |||||||||||| ||||||| ||||||||| | || || |||| ||||||||||||||| ||||| | |||| ||| | |||| |
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| T |
3563645 |
aaaatactaaaatggcggcttcaacaatgtctctctcttcttcatcatttgtagggaaggcaatcaagctttccccatccacccaagacattggggtggg |
3563744 |
T |
|
| Q |
266 |
aagaatcatcatgaggaaaacaaccaccaagaagacctcttcttctggaagctagtggtacggtccagaccgtgtcaagtacttgggtccattctc |
361 |
Q |
| |
|
|||| ||| ||||||||| |||||||||||||| | | |||||||||| |||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
3563745 |
aagagtcacaatgaggaaagcaaccaccaagaagtctgttccttctggaagtccttggtacggtccagaccgtgtcaagtacttgggcccattctc |
3563840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 172 - 360
Target Start/End: Original strand, 13275583 - 13275767
Alignment:
| Q |
172 |
ctacaatggctgcttcaacaatggctctctcatcttcatcaatggttggaaaggaaatcaagctttccccttccactccagaccttgtgatgggaagaat |
271 |
Q |
| |
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||||||||||||| ||||||||| ||||||| ||||||||| |||||||||||| |||||| ||| ||| || || | |||||||| || ||||| | |
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| T |
13275583 |
ctacaatggctgcctcaacaatgtctctctcttcttcatcattggttggaaaggcaatcaaacttaacccctctacccaagaccttggtattggaagggt |
13275682 |
T |
|
| Q |
272 |
catcatgaggaaaacaaccaccaagaagacctcttcttctggaagctagtggtacggtccagaccgtgtcaagtacttgggtccattct |
360 |
Q |
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|| ||||| ||||||||||| ||||| |||||| ||||| ||||| ||||||||||||||||||||| |||| ||||||| |
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| T |
13275683 |
caccatga-aaaaacaaccacaaagaa---agtttcttcaggaagtccatggtatggtccagaccgtgtcaagtacctgggcccattct |
13275767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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