View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9753_low_2 (Length: 626)
Name: NF9753_low_2
Description: NF9753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9753_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 521; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 17 - 618
Target Start/End: Original strand, 38996543 - 38997142
Alignment:
| Q |
17 |
catcaaaagcgtaagtatctctataaatttgttctttttatttatcaaaatgcacccaaaatattctgatattaaagacattgttttaaaaaccggattg |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38996543 |
catcaaaagcgtaagtatctctataaatttgttctttttatttatcaaaatgcacccaaaatattctgatattaaagacattgttttaaaaaccggattg |
38996642 |
T |
|
| Q |
117 |
gacggccgaaaattgggtggagcgacctaatggactggcaatgctattgaacaggtatgaaccgatgacttggattgaatcgggtaaatactatacctct |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38996643 |
gacggccgaaaattgggtggagcgacctaatggactggcaatgctattgaacgggtatgaaccgatgacttggattgaatcgggtaaatactatacctct |
38996742 |
T |
|
| Q |
217 |
ttttcgatttctttgtacattttttctgaaattcttnnnnnnnnncgacatcattttcctataagagataaggagtttaaggtgccggattaaaatccga |
316 |
Q |
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| T |
38996743 |
ttttcgatttctttgtacattttttctgaaattcttaaaaaaa--cgacatcattttcctataagagataaggagtttaaggtgccggattaaaatccga |
38996840 |
T |
|
| Q |
317 |
atgaatgagtaaatattaatctaacaacttgttactaacattaatcattnnnnnnncggcatgattttcacagaggctttgaatttctgtttgattttgg |
416 |
Q |
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| T |
38996841 |
acgaatgagtaaatattaatctaacaacttgttactaacattaatcattaaaaaaacggcatgattttcacagaggctttgaatttctgtttgattttgg |
38996940 |
T |
|
| Q |
417 |
ttgctataaaattgatgacttgtttgggtcttagggtgggttatttgtgttttgataaatttaataatttttctctaactgtggttgaaaattattctgt |
516 |
Q |
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||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |
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| T |
38996941 |
ttgttataaaattgatgacttgtttgggttttagggtgggttatttgtgttttgataaatttaataatttttctctaactatggtttaaaattattctgt |
38997040 |
T |
|
| Q |
517 |
gttttaatttggttgttatactgttatactatgttgtgctttgcatatgtatattgttatttaggtttctgtttatgtctatctttagtttttgcctatg |
616 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
38997041 |
gttttaatttggttgttatactgttatactatgttgtgctttgcatatgtatattgttatttaggtttctgtttatgtctatctttagtttttgcctctg |
38997140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 326 - 358
Target Start/End: Original strand, 5805175 - 5805207
Alignment:
| Q |
326 |
taaatattaatctaacaacttgttactaacatt |
358 |
Q |
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| T |
5805175 |
taaatattaatctaacaacttattactaacatt |
5805207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 345
Target Start/End: Complemental strand, 33257239 - 33257208
Alignment:
| Q |
314 |
cgaatgaatgagtaaatattaatctaacaact |
345 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
33257239 |
cgaatgaatgagtaaatattaatctaacaact |
33257208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 358
Target Start/End: Complemental strand, 3004890 - 3004849
Alignment:
| Q |
317 |
atgaatgagtaaatattaatctaacaacttgttactaacatt |
358 |
Q |
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| T |
3004890 |
atgaatgagcaaatattaatctaacaactaattactaacatt |
3004849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 358
Target Start/End: Original strand, 10799262 - 10799303
Alignment:
| Q |
317 |
atgaatgagtaaatattaatctaacaacttgttactaacatt |
358 |
Q |
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||||| ||||||||||||||||||||||| ||||||||||| |
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| T |
10799262 |
atgaaggagtaaatattaatctaacaactaattactaacatt |
10799303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 309 - 365
Target Start/End: Original strand, 35753093 - 35753149
Alignment:
| Q |
309 |
aaatccgaatgaatgagtaaatattaatctaacaacttgttactaacattaatcatt |
365 |
Q |
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||||||||||||| |||||||||||||||||||| | ||| ||||||| |||||| |
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| T |
35753093 |
aaatccgaatgaagaagtaaatattaatctaacaaataattaataacatttatcatt |
35753149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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