View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9753_low_20 (Length: 373)
Name: NF9753_low_20
Description: NF9753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9753_low_20 |
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Alignment Details
Target: chr6 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 355
Target Start/End: Original strand, 34878839 - 34879193
Alignment:
| Q |
1 |
gaaaaaggagaacacctgtgatgttgactgggaaagttcattcttcatttggcatcgtccgacgtctaacattaggaaaattccaaacctctctgaggat |
100 |
Q |
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| T |
34878839 |
gaaaaaggagaacacctgtgatgttgactgggaaagttcattcttcatttggcatcgtccgacgtctaacattaggaaaattccaaacctctctgaggat |
34878938 |
T |
|
| Q |
101 |
ctttggttagtctattcaacgttaccaaacattgtgtttttcgctatttgcattttcgtatctttattattttaaactggagatgttgttctaaccatat |
200 |
Q |
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| T |
34878939 |
ctttggttagtctattcaacgttaccaaacattgtgtttttcgctatttgcattttcgtatctttattattttaaaccggagctgttgttctaacaatat |
34879038 |
T |
|
| Q |
201 |
gtgtgtgtaaatgcagtcaaacaatggatgagtacattgacaaactagttcaagtggcagagacattatctcagatgatgagtgaaaatcttggtttaga |
300 |
Q |
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| T |
34879039 |
gtgtgtgtaaatgcagtcaaacaatggatgagtacattgacaaactagttcaagtggcagagacattatctcagatgatgagtgaaaatcttggtttgga |
34879138 |
T |
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| Q |
301 |
gaaagattacataaagaaagcattttcaggaagtaataataatggaccagctatg |
355 |
Q |
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| T |
34879139 |
gaaagattacataaagaaagcattttcaggaaataataataatggaccagctatg |
34879193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 173
Target Start/End: Complemental strand, 41810621 - 41810571
Alignment:
| Q |
123 |
taccaaacattgtgtttttcgctatttgcattttcgtatctttattatttt |
173 |
Q |
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| T |
41810621 |
taccaaacattgtgtgtttctctgtttgcattttcatatctttattctttt |
41810571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 134 - 194
Target Start/End: Complemental strand, 26492831 - 26492771
Alignment:
| Q |
134 |
gtgtttttcgctatttgcattttcgtatctttattattttaaactggagatgttgttctaa |
194 |
Q |
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|||| |||| ||||| ||||||||||||||||||| |||| |||| ||| ||||| ||||| |
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| T |
26492831 |
gtgtgtttctctattagcattttcgtatctttattcttttgaacttgagttgttgatctaa |
26492771 |
T |
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