View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9753_low_22 (Length: 363)
Name: NF9753_low_22
Description: NF9753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9753_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 1481595 - 1481941
Alignment:
| Q |
1 |
cttgcggagtttgaagagtgccaatgaaagagcctctaattctattactgctattaatagaatttaggttggaacaaacgagtgaggttaagctcgcaag |
100 |
Q |
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| T |
1481595 |
cttgcggagtttgaagagtgccaatgaaagagcctctaattctattactgctattaatagaatttaggttggaacagacgagtgaggttaagctcgcaag |
1481694 |
T |
|
| Q |
101 |
ccattagcgggaaggttgagttggtttgagatattgagcgatgtgagtttcaatgggaaacaggagatttgggtgagaagcgcattgaggttacagtagt |
200 |
Q |
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| T |
1481695 |
ccattagcgggaaggttgagttggtttgagatattgagcgatgtgagtttcaatgggaaacaggagatttgggtgagaagcgcatcgaggttaaagtagt |
1481794 |
T |
|
| Q |
201 |
agaagg-aaggtcgaaagagatgagattggtgaacctttgtaggaggcgtggaaggtaacgggttgaatgccagatagtgagagagaatttgtaactgtt |
299 |
Q |
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| T |
1481795 |
agaaggaaaggtcaaaagaggtgagattggtgaacctttgtaggaggcgtggaaggtaacgggttgaatgccagatagtgagagagaatttgtaactgtt |
1481894 |
T |
|
| Q |
300 |
ggtgacggagaggaagtgttttgaagcgactgagagagacttcatgt |
346 |
Q |
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| T |
1481895 |
ggtgacggagaggaagtgttttgaagcgactgagagagacttcatgt |
1481941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 121 - 161
Target Start/End: Complemental strand, 53760277 - 53760237
Alignment:
| Q |
121 |
ttggtttgagatattgagcgatgtgagtttcaatgggaaac |
161 |
Q |
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| T |
53760277 |
ttggttggagagattgagtgatgtgagtttcaatgggaaac |
53760237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 90 - 343
Target Start/End: Complemental strand, 5766620 - 5766360
Alignment:
| Q |
90 |
aagctcgcaagccattagcgggaaggttgagttggtttgagatattgagcgatgtgagtttcaa---tgggaaacaggagatttgggtgagaagcgcatt |
186 |
Q |
| |
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|||||||||| |||||||| |||||| |||||||||| || | ||||||||||||||||||||| |||||| | |||||||| || ||||| |||| |
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| T |
5766620 |
aagctcgcaaaccattagcaggaaggatgagttggttggaaagattgagcgatgtgagtttcaacattgggaagctagagatttgagtaagaagtgcatc |
5766521 |
T |
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| Q |
187 |
gaggttacagtagtagaagga-aggtcgaaagagatgagattggtgaacctttgtaggaggcgtggaaggtaacg---ggttgaatgccagatagtgaga |
282 |
Q |
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|||| || ||| ||| | || ||||||| ||| |||| |||||||||||||||| |||| || ||| | | || || || | ||||||| ||| |
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| T |
5766520 |
taggtcaccgtaatagtacgagaggtcgagggaggtgagtttggtgaacctttgtaataggccagggaggacaggtagggctggatacaagatagttaga |
5766421 |
T |
|
| Q |
283 |
gagaatttgtaactgttggtgacggagaggaagtgttttgaagcgactgagagagacttca |
343 |
Q |
| |
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||||||||| || ||||||||||||||||||||||||||| ||||| || |||||||||| |
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| T |
5766420 |
cagaatttgtgacggttggtgacggagaggaagtgttttgaggcgacagatagagacttca |
5766360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 90 - 343
Target Start/End: Original strand, 14004184 - 14004444
Alignment:
| Q |
90 |
aagctcgcaagccattagcgggaaggttgagttggtttgagatattgagcgatgtgagtttcaa---tgggaaacaggagatttgggtgagaagcgcatt |
186 |
Q |
| |
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|||||||||| |||||||| |||||| || ||||||| || | |||||||||||||||||| || |||||| | |||||||| || ||||| |||| |
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| T |
14004184 |
aagctcgcaaaccattagcaggaaggatgggttggttggaaagattgagcgatgtgagtttgaacattgggaagctagagatttgagtaagaagtgcatc |
14004283 |
T |
|
| Q |
187 |
gaggttacagtagtagaagga-aggtcgaaagagatgagattggtgaacctttgtaggaggcgtggaaggtaacg---ggttgaatgccagatagtgaga |
282 |
Q |
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||||| || || ||| | || ||||||| ||| |||| |||||||||||||||| |||| || ||| | | ||||| || | ||||||| ||| |
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| T |
14004284 |
gaggtcaccataatagtacgagaggtcgagggaggtgagtttggtgaacctttgtaataggccagggaggacaggtagggttggatacaagatagttaga |
14004383 |
T |
|
| Q |
283 |
gagaatttgtaactgttggtgacggagaggaagtgttttgaagcgactgagagagacttca |
343 |
Q |
| |
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||||||||| || ||||||||||||||||||||||||||| ||||| || |||||||||| |
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| T |
14004384 |
cagaatttgtgacggttggtgacggagaggaagtgttttgaggcgacagatagagacttca |
14004444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 274 - 346
Target Start/End: Complemental strand, 34935814 - 34935742
Alignment:
| Q |
274 |
atagtgagagagaatttgtaactgttggtgacggagaggaagtgttttgaagcgactgagagagacttcatgt |
346 |
Q |
| |
|
||||||||||||||||||| || |||||||||||||||||||||||| || | ||| |||||||||| ||||| |
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| T |
34935814 |
atagtgagagagaatttgtgacggttggtgacggagaggaagtgtttggaggagacagagagagactccatgt |
34935742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 5766826 - 5766789
Alignment:
| Q |
1 |
cttgcggagtttgaagagtgccaatgaaagagcctcta |
38 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||||||| |
|
|
| T |
5766826 |
cttgcggagtttgatgagtgctaatgaaagagcctcta |
5766789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 14003978 - 14004015
Alignment:
| Q |
1 |
cttgcggagtttgaagagtgccaatgaaagagcctcta |
38 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||||||| |
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| T |
14003978 |
cttgcggagtttgatgagtgctaatgaaagagcctcta |
14004015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 128 - 167
Target Start/End: Original strand, 9581769 - 9581808
Alignment:
| Q |
128 |
gagatattgagcgatgtgagtttcaatgggaaacaggaga |
167 |
Q |
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|||| |||||||||||||||||||||||||||||| |||| |
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| T |
9581769 |
gagagattgagcgatgtgagtttcaatgggaaacaagaga |
9581808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 128 - 167
Target Start/End: Original strand, 9587340 - 9587379
Alignment:
| Q |
128 |
gagatattgagcgatgtgagtttcaatgggaaacaggaga |
167 |
Q |
| |
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|||| |||||||||||||||||||||||||||||| |||| |
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| T |
9587340 |
gagagattgagcgatgtgagtttcaatgggaaacaagaga |
9587379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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