View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9753_low_23 (Length: 351)
Name: NF9753_low_23
Description: NF9753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9753_low_23 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 291; Significance: 1e-163; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 30 - 351
Target Start/End: Original strand, 1794528 - 1794850
Alignment:
| Q |
30 |
cggaacatcaaatataaaagaaagactgattcaatgaagcaaaactatatagtactatttataatatagttcatgagtgaaccattagtctcagaatgac |
129 |
Q |
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| T |
1794528 |
cggaacatcaaatataaaagaaagactgattcaatgaagcaaaacgatatagtactatttataatatagttcatgaatgaaccattagtctcagaatgac |
1794627 |
T |
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| Q |
130 |
ccgtactgaatttttcccattcactcaactctaaaacattattatgataattctcgtattcaccaaattgaaatccgaaaatttgcatccacatgttagg |
229 |
Q |
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| T |
1794628 |
ccgtactgaatttttcccattcactcaactctaaaacattattatgataattctcatattcaccaaattgaaatccgaaaatttgcatccacatgttagg |
1794727 |
T |
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| Q |
230 |
tgaatacaaaggagcgtcattgatgaatatagttctttttaga-ccccttaatgtttcttagaaacaacactgccaatactgctattgacactcccttca |
328 |
Q |
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| T |
1794728 |
tgaatacaaaggagcgtcattgatgaatatagttctttttagacccccttaatgtttcttagaaacaacactgccaatactgctattgacactcccttca |
1794827 |
T |
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| Q |
329 |
attgatgatgatctacccttaaa |
351 |
Q |
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| T |
1794828 |
gatgatgatgatctactcttaaa |
1794850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 51 - 340
Target Start/End: Original strand, 1811408 - 1811694
Alignment:
| Q |
51 |
aagactgattcaatgaagcaaaactatatagtactatttataatatagttcatgagtgaaccattagtctcagaatgacccgtactgaattt-ttcccat |
149 |
Q |
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| T |
1811408 |
aagactgattcaatgaagcaaaatgatttagtactatttataatataattcatgagtgaggcattagttccaaaatgactcataatggatttcttcccat |
1811507 |
T |
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| Q |
150 |
tcactcaactctaaaa-cattattatgataattctcgtattcaccaaattgaaatccgaaaatttgcatccacatgttaggtgaatacaaaggagcgtca |
248 |
Q |
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| T |
1811508 |
tcactcaactctaaaaacattattttgataactcccatattcatcaaattgaaatccaaaaatttgcatccacatgttaggtgaatccaaaggagcctca |
1811607 |
T |
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| Q |
249 |
ttgatgaatatagttcttttt-agaccccttaatgtttcttagaaacaacactgccaatactgctattgacactcccttcaattgatgatgat |
340 |
Q |
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| T |
1811608 |
---atgaacat--ttctttttaagccccatcattgtctttta-aaacaacaccgccattactgctattgatactcccttcagatgatgatgat |
1811694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 88 - 253
Target Start/End: Original strand, 1814591 - 1814757
Alignment:
| Q |
88 |
ttataatatagttcatgagtgaaccattagtctcagaatgacccgtactgaattt-ttcccattcactcaactctaaaacattattatgataattctcgt |
186 |
Q |
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||||| |||||||||||| |||| || ||||| || |||||| | |||||||||| |||||||||||||||||||||||||||||||| ||||||| | |
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| T |
1814591 |
ttatattatagttcatgattgaatcactagtcccacaatgactcatactgaatttcttcccattcactcaactctaaaacattattatcataattcctat |
1814690 |
T |
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| Q |
187 |
attcaccaaattgaaatccgaaaatttgcatccacatgttaggtgaatacaaaggagcgtcattgat |
253 |
Q |
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| T |
1814691 |
attcatcaaattgaaatccaaacatttgcatccacattttaggtgaatccaaaggagcctcattgat |
1814757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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