View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9753_low_28 (Length: 315)
Name: NF9753_low_28
Description: NF9753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9753_low_28 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 6 - 297
Target Start/End: Original strand, 9381070 - 9381361
Alignment:
| Q |
6 |
aggagcacagaccaaatcatggaccctaggagcagtcaatcctggcctttcattcacatcaataacaatatcaccacccttcaaaatctcacccttagga |
105 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |
|
|
| T |
9381070 |
aggaacacaaaccaaatcatggaccctaggagcagtcaatcctggcctttcattcacatcaataacaatatcacgacccttcaaaatctcacccttggga |
9381169 |
T |
|
| Q |
106 |
cccacaaaattaaaatcaaagcattgaattatagcaccaagcaaagctggaacttcttgcattgctaaagtaactccaggacacatccttcttcccgacc |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
9381170 |
cccacaaaattaaaatcaaagcattgaattatagcaccaagcaaagctggaacttcttgcattgctaaagtaactccaggacacatccttcttcctgacc |
9381269 |
T |
|
| Q |
206 |
caaatggcaaaatctgaaaattttgtcccctcacatcaataaccccattggaatttgctgaattttttagaaacctttctggattaaattcc |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9381270 |
caaatggcaaaatctgaaaattttgtcccctcacgtcaataaccccattggaatttgctgaattttttagaaacctttctggattaaattcc |
9381361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 6 - 297
Target Start/End: Original strand, 9398495 - 9398786
Alignment:
| Q |
6 |
aggagcacagaccaaatcatggaccctaggagcagtcaatcctggcctttcattcacatcaataacaatatcaccacccttcaaaatctcacccttagga |
105 |
Q |
| |
|
|||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9398495 |
aggaacacaaaccaaatcatgcaccctaggagcagtcaatcctggcctttcattcacatcaataacaatatcaccacccttcaaaatctcacccttagga |
9398594 |
T |
|
| Q |
106 |
cccacaaaattaaaatcaaagcattgaattatagcaccaagcaaagctggaacttcttgcattgctaaagtaactccaggacacatccttcttcccgacc |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
9398595 |
cccacaaaattaaaatcaaagcattgaattatggcaccaagcaaagctggaacttcttgcattgctaaagtaaccccaggacacatccttcttcctgacc |
9398694 |
T |
|
| Q |
206 |
caaatggcaaaatctgaaaattttgtcccctcacatcaataaccccattggaatttgctgaattttttagaaacctttctggattaaattcc |
297 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| |
|
|
| T |
9398695 |
caaatggcaaaatctgaaaattttgccccctcacatcaataaccccattggaatttgttgaattttttagaaatctttctggattaaattcc |
9398786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 115 - 245
Target Start/End: Complemental strand, 23244784 - 23244654
Alignment:
| Q |
115 |
ttaaaatcaaagcattgaattatagcaccaagcaaagctggaacttcttgcattgctaaagtaactccaggacacatccttcttcccgacccaaatggca |
214 |
Q |
| |
|
||||||||||| || ||||| || ||||||||||| ||||| ||||||||||| ||||| | ||| ||||||||||| |||||||| || |||||||| | |
|
|
| T |
23244784 |
ttaaaatcaaaacactgaataattgcaccaagcaatgctggcacttcttgcatggctaacgaaacaccaggacacattcttcttccagatccaaatggta |
23244685 |
T |
|
| Q |
215 |
aaatctgaaaattttgtcccctcacatcaat |
245 |
Q |
| |
|
|| ||||||| ||||||||| |||||||| |
|
|
| T |
23244684 |
gaagttgaaaatgttgtcccctaacatcaat |
23244654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 212
Target Start/End: Original strand, 34762524 - 34762558
Alignment:
| Q |
178 |
actccaggacacatccttcttcccgacccaaatgg |
212 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| |
|
|
| T |
34762524 |
actccaggacacatccttcttccagacccaaatgg |
34762558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 212
Target Start/End: Complemental strand, 34781664 - 34781630
Alignment:
| Q |
178 |
actccaggacacatccttcttcccgacccaaatgg |
212 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| |
|
|
| T |
34781664 |
actccaggacacatccttcttccagacccaaatgg |
34781630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University