View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9753_low_29 (Length: 314)
Name: NF9753_low_29
Description: NF9753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9753_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 171; Significance: 8e-92; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 9505056 - 9505307
Alignment:
| Q |
1 |
caatgacaaacacatgagttggtgtttatcgaatattatcgtgtatttttgaaagagtgnnnnnnnnnnnnnnn-aaagtatatcgtgacattttttcaa |
99 |
Q |
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| T |
9505056 |
caatgacaaacatatgagttggtggttattgaatattatcgtgtatgtttgaaagagtgttttttttttttttttaaagtatatcgtgacattttttcaa |
9505155 |
T |
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| Q |
100 |
gattattgatatgagaattgtgtgagaattaaaactgaatgatagtatatagtggtagctaattttgaaaaagtgatctaaggatcaatcttttgcaaag |
199 |
Q |
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| T |
9505156 |
gattattgatatgagaattgtgtgagaattaaaattgaatgatagtatatagtggtatctaattttgaaaaagtggtctaaggatcaatcttttgcaaag |
9505255 |
T |
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| Q |
200 |
ttaacagtttagatcttcatatttcatgactggaataaacttgttgtgagca |
251 |
Q |
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| T |
9505256 |
ttaacagtttagatcttcatatttcatgactggaataaacttgttgtgagca |
9505307 |
T |
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Target: chr7 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 158 - 250
Target Start/End: Original strand, 40677390 - 40677480
Alignment:
| Q |
158 |
ctaattttgaaaaagtgatctaaggatcaatcttttgcaaagttaacagtttagatcttcatatttcatgactggaataaacttgttgtgagc |
250 |
Q |
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||||||||||||||||||| || ||||||||||||||||||||||||| ||||||| ||||||| | ||||||| |||||||||||||||||| |
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| T |
40677390 |
ctaattttgaaaaagtgatata-ggatcaatcttttgcaaagttaacaatttagatattcatatct-atgactgaaataaacttgttgtgagc |
40677480 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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