View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9753_low_30 (Length: 313)
Name: NF9753_low_30
Description: NF9753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9753_low_30 |
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Alignment Details
Target: chr7 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 40514182 - 40514482
Alignment:
| Q |
1 |
taccctctttctactgcaggagctaatgaagcatggctcctagggtataaagctacaattataaatctttaaagacgtctagtctttgtatccaaggttt |
100 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
40514182 |
taccctctttctactgcaggagctgatgaagcatggctcctagggtataaagctacaattataaatcttgaaagacgtctagtctttgtatccaaggttt |
40514281 |
T |
|
| Q |
101 |
aggaatatgatcatcaaacttgtagggtataaaagtaggaatttaattgcttggttcaaatactagctttcaccatttgtcctttaaatattcctatttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40514282 |
aggaatatgatcatcaaacttgtagggtataaaagtaggaatttaattgcttggttcaaatactagctttcaccatttgtcctttaaatattcctatttt |
40514381 |
T |
|
| Q |
201 |
cttccttgtnnnnnnnnnnnnntccctgccgcaaggcatggtaaactctagatgcttttgcttttatgagatgattctaatgaggaaaccatttccttcc |
300 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40514382 |
cttccttgt---aaaaaaaaaatccctgccgcaaggcatggtaaactctagatgcttttgcttttatgagatgattctaatgaggaaaccatttccttcc |
40514478 |
T |
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| Q |
301 |
tttg |
304 |
Q |
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|||| |
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| T |
40514479 |
tttg |
40514482 |
T |
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