View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9753_low_37 (Length: 261)

Name: NF9753_low_37
Description: NF9753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9753_low_37
NF9753_low_37
[»] chr6 (4 HSPs)
chr6 (18-248)||(32600892-32601133)
chr6 (137-248)||(32590551-32590662)
chr6 (17-65)||(32590441-32590489)
chr6 (158-212)||(24883380-24883434)
[»] chr1 (2 HSPs)
chr1 (156-248)||(34594089-34594181)
chr1 (158-245)||(34578391-34578478)


Alignment Details
Target: chr6 (Bit Score: 142; Significance: 1e-74; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 18 - 248
Target Start/End: Original strand, 32600892 - 32601133
Alignment:
Q  18 ggaataaagttagttggtcataatataagaaaatgaagaaaataattgannnnnnnnactattccagttataatattaagtttactcgaagaaaatgnnn 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||       
T  32600892 ggaataaagttagttggtcataatataagaaaatgaagaaaataattgattttttttactattccagttataatattaagtttactcgaagaaaatgaaa 32600991  T
Q  118 nnnnnnnt-----------gaagaaaataagtgagttatcatattaattttacctattccagttatcttcaatatctccagttgttctccaactatttcc 206  Q
           |           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  32600992 aaaaaaatatgaagaaaatgaagaaaataagtgagttatcatattaattttacctattccagttatcttcaatatctcctgttgttctccaactatttcc 32601091  T
Q  207 cacacttttggcccatgtagctggatcttcccatcccctatg 248  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  32601092 cacacttttggcccatgtagcaggatcttcccatcccctatg 32601133  T

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Target: chr6; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 137 - 248
Target Start/End: Original strand, 32590551 - 32590662
Alignment:
Q  137 gtgagttatcatattaattttacctattccagttatcttcaatatctccagttgttctccaactatttcccacacttttggcccatgtagctggatcttc 236  Q
    |||| |||||||||||||||||||||| ||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  32590551 gtgaattatcatattaattttacctatgccaattatctttaatatctcctgttgttctccaactatttcccacacttttggcccatgttgctggatcttc 32590650  T
Q  237 ccatcccctatg 248  Q
    |  |||||||||    
T  32590651 ctttcccctatg 32590662  T

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Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 32590441 - 32590489
Alignment:
Q  17 aggaataaagttagttggtcataatataagaaaatgaagaaaataattg 65  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  32590441 aggaataaagttagttggtcataatataggaaaatgaagaaaataattg 32590489  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 212
Target Start/End: Complemental strand, 24883434 - 24883380
Alignment:
Q  158 acctattccagttatcttcaatatctccagttgttctccaactatttcccacact 212  Q
    |||||| ||| |||||||| ||||||   ||||||||||||||||||||||||||    
T  24883434 acctatcccatttatcttcgatatctgatgttgttctccaactatttcccacact 24883380  T

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Target: chr1 (Bit Score: 69; Significance: 5e-31; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 156 - 248
Target Start/End: Original strand, 34594089 - 34594181
Alignment:
Q  156 ttacctattccagttatcttcaatatctccagttgttctccaactatttcccacacttttggcccatgtagctggatcttcccatcccctatg 248  Q
    |||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||    
T  34594089 ttacctattccaattatcttcaatatcacctgttgttctccaactatttcccacactttttgcccatgttgctgggtcttcccatcccctatg 34594181  T

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Target: chr1; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 158 - 245
Target Start/End: Original strand, 34578391 - 34578478
Alignment:
Q  158 acctattccagttatcttcaatatctccagttgttctccaactatttcccacacttttggcccatgtagctggatcttcccatcccct 245  Q
    |||| ||||| |||||||| ||||| || || |||||||||||||||||||||||||||||||| || || |||||||||||||||||    
T  34578391 acctcttccaattatcttctatatcacccgtggttctccaactatttcccacacttttggcccacgttgcaggatcttcccatcccct 34578478  T

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