View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9753_low_42 (Length: 254)

Name: NF9753_low_42
Description: NF9753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9753_low_42
NF9753_low_42
[»] chr6 (2 HSPs)
chr6 (10-254)||(34427934-34428182)
chr6 (116-254)||(34414804-34414938)
[»] chr4 (3 HSPs)
chr4 (124-248)||(14013807-14013927)
chr4 (188-248)||(34943264-34943324)
chr4 (119-234)||(42784745-42784860)
[»] chr8 (5 HSPs)
chr8 (165-251)||(26516982-26517068)
chr8 (120-232)||(12210909-12211020)
chr8 (120-232)||(12455337-12455448)
chr8 (131-250)||(32639138-32639257)
chr8 (124-183)||(11567565-11567624)
[»] chr1 (1 HSPs)
chr1 (164-251)||(5086027-5086114)
[»] chr7 (1 HSPs)
chr7 (162-248)||(34726709-34726794)
[»] chr5 (1 HSPs)
chr5 (163-251)||(32810902-32810990)
[»] chr2 (1 HSPs)
chr2 (121-229)||(33643528-33643636)
[»] chr3 (1 HSPs)
chr3 (140-217)||(53798256-53798332)


Alignment Details
Target: chr6 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 10 - 254
Target Start/End: Original strand, 34427934 - 34428182
Alignment:
Q  10 agaagcagagacatacgagaatagataattttactgatatcacagatagctatgctttaggcaagattaataaaaagacatgtaaga----ttgataata 105  Q
    |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||    
T  34427934 agaaacagagacatacgagaatagataatttgactgatatcacagatagctatgctttaggcaagattaataaaaagacatgtaagaaagattgataata 34428033  T
Q  106 gaaccaaattgtatcgagtaaataagcattttggtcctcaaaattgtgaaggtcggtcaatttaatccctcaaatttatgatatagcaaattaatccttt 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34428034 gaaccaaattgtatcgagtaaataagcattttggtcctcaaaattgtgaaggtcggtcaatttaatccctcaaatttatgatatagcaaattaatccttt 34428133  T
Q  206 aaattaaagagcctcaatcaatttagtccctccatcaaaatatctcatt 254  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  34428134 aaattaaagagcctcaatcaatttagtccctccatcaaaatatctcatt 34428182  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 116 - 254
Target Start/End: Original strand, 34414804 - 34414938
Alignment:
Q  116 gtatcgagtaaataagcattttggtcctcaaaattgtgaaggtcggtcaatttaatccctcaaatttatgatatagcaaattaatcctttaaattaaaga 215  Q
    ||||||||||||||||||||| ||||||| ||||||| || || ||| ||||| |||  |||||||||||| |||| | |||| ||| |||||   ||||    
T  34414804 gtatcgagtaaataagcatttcggtcctcgaaattgtaaaagttggt-aattttatctatcaaatttatgaaatagaagattagtccgttaaa---aaga 34414899  T
Q  216 gcctcaatcaatttagtccctccatcaaaatatctcatt 254  Q
       |||||||||||| ||||||| ||||| |||||||||    
T  34414900 aagtcaatcaatttattccctccttcaaagtatctcatt 34414938  T

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Target: chr4 (Bit Score: 64; Significance: 4e-28; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 124 - 248
Target Start/End: Original strand, 14013807 - 14013927
Alignment:
Q  124 taaataagcattttggtcctcaaaattgtgaaggtcggtcaatttaatccctcaaatttatgatatagcaaattaatcctttaaattaaagagcctcaat 223  Q
    |||||||||||||||||||||||||||||     | | |||||||| |||||||||||||||| |||||||| |||||| |||||||||||| |  ||||    
T  14013807 taaataagcattttggtcctcaaaattgtc----ttgatcaatttagtccctcaaatttatgaaatagcaaaataatcccttaaattaaagaacaccaat 14013902  T
Q  224 caatttagtccctccatcaaaatat 248  Q
    |||||||||||||| ||||||||||    
T  14013903 caatttagtccctctatcaaaatat 14013927  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 188 - 248
Target Start/End: Complemental strand, 34943324 - 34943264
Alignment:
Q  188 atagcaaattaatcctttaaattaaagagcctcaatcaatttagtccctccatcaaaatat 248  Q
    ||||||||||||| | |||||||||||||  | ||| ||||||||||||||||||||||||    
T  34943324 atagcaaattaattccttaaattaaagagagttaattaatttagtccctccatcaaaatat 34943264  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 234
Target Start/End: Original strand, 42784745 - 42784860
Alignment:
Q  119 tcgagtaaataagcattttggtcctcaaaattgtgaaggtcggtcaatttaatccctcaaatttatgatatagcaaattaatcctttaaattaaagagcc 218  Q
    |||||||||| | ||||||| |||||  |||||||| ||||| |||||||| | ||| ||||||| || ||||||||||| ||| | || |||||||       
T  42784745 tcgagtaaatgaacattttgatcctcgcaattgtgatggtcgatcaatttagttcctgaaatttacgaaatagcaaattagtccctcaagttaaagaaat 42784844  T
Q  219 tcaatcaatttagtcc 234  Q
    ||||| ||||||||||    
T  42784845 tcaattaatttagtcc 42784860  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 165 - 251
Target Start/End: Complemental strand, 26517068 - 26516982
Alignment:
Q  165 atttaatccctcaaatttatgatatagcaaattaatcctttaaattaaagagcctcaatcaatttagtccctccatcaaaatatctc 251  Q
    ||||| |||||||||||||||| |||| |||||| | | |||||  || ||||||||||||||||||||| |||||| |||||||||    
T  26517068 atttagtccctcaaatttatgaaatagaaaattagtaccttaaacgaaggagcctcaatcaatttagtccttccatctaaatatctc 26516982  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 120 - 232
Target Start/End: Original strand, 12210909 - 12211020
Alignment:
Q  120 cgagtaaataagcattttggtcctcaaaattgtgaaggtcggtcaatttaatccctcaaatttatgatatagcaaattaatcctttaaattaaagagcct 219  Q
    ||||||||||| ||||||||||||||||||||| |  ||||  ||||||| |||||||||| || || ||| ||| | ||||| ||||||||||||   |    
T  12210909 cgagtaaataatcattttggtcctcaaaattgtaagtgtcgaccaatttagtccctcaaatataagaaataacaattaaatcc-ttaaattaaagaatgt 12211007  T
Q  220 caatcaatttagt 232  Q
    |||||| ||||||    
T  12211008 caatcattttagt 12211020  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 120 - 232
Target Start/End: Original strand, 12455337 - 12455448
Alignment:
Q  120 cgagtaaataagcattttggtcctcaaaattgtgaaggtcggtcaatttaatccctcaaatttatgatatagcaaattaatcctttaaattaaagagcct 219  Q
    ||||||||||| ||||||||||||||||||||| |  ||||  ||||||| |||||||||| || || ||| ||| | ||||| ||||||||||||   |    
T  12455337 cgagtaaataatcattttggtcctcaaaattgtaagtgtcgaccaatttagtccctcaaatataagaaataacaattaaatcc-ttaaattaaagaatgt 12455435  T
Q  220 caatcaatttagt 232  Q
    |||||| ||||||    
T  12455436 caatcattttagt 12455448  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 250
Target Start/End: Complemental strand, 32639257 - 32639138
Alignment:
Q  131 gcattttggtcctcaaaattgtgaaggtcggtcaatttaatccctcaaatttatgatatagcaaattaatcctttaaattaaagagcctcaatcaattta 230  Q
    |||||| |||||||| |||||| | |||||  ||||||| |  |||||||||| || |||| |||||| ||| ||||| |||||| | || |||||||||    
T  32639257 gcatttcggtcctcagaattgtaatggtcgagcaatttagtttctcaaatttacgaaatagtaaattagtccgttaaactaaagaacttccatcaattta 32639158  T
Q  231 gtccctccatcaaaatatct 250  Q
    | | ||| ||||||||||||    
T  32639157 gccactctatcaaaatatct 32639138  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 124 - 183
Target Start/End: Original strand, 11567565 - 11567624
Alignment:
Q  124 taaataagcattttggtcctcaaaattgtgaaggtcggtcaatttaatccctcaaattta 183  Q
    ||||| |||||||| |||||  ||||||| | |||||||||||||| |||||||||||||    
T  11567565 taaatcagcattttagtccttgaaattgtaagggtcggtcaatttagtccctcaaattta 11567624  T

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Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 164 - 251
Target Start/End: Complemental strand, 5086114 - 5086027
Alignment:
Q  164 aatttaatccctcaaatttatgatatagcaaattaatcctttaaattaaagagcctcaatcaatttagtccctccatcaaaatatctc 251  Q
    |||||| |||||||||||||  | ||||||||||| ||||||||||||||||   ||||||||||||||   || |||||||||||||    
T  5086114 aatttagtccctcaaatttacaaaatagcaaattagtcctttaaattaaagaatatcaatcaatttagttattcaatcaaaatatctc 5086027  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 162 - 248
Target Start/End: Complemental strand, 34726794 - 34726709
Alignment:
Q  162 tcaatttaatccctcaaatttatgatatagcaaattaatcctttaaattaaagagcctcaatcaatttagtccctccatcaaaatat 248  Q
    |||||||| ||||||| |||||  | ||||||||||| ||||||||||||||||   | ||| ||||||||||||||||||||||||    
T  34726794 tcaatttactccctcatatttaaaaaatagcaaattagtcctttaaattaaagaatat-aattaatttagtccctccatcaaaatat 34726709  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 163 - 251
Target Start/End: Original strand, 32810902 - 32810990
Alignment:
Q  163 caatttaatccctcaaatttatgatatagcaaattaatcctttaaattaaagagcctcaatcaatttagtccctccatcaaaatatctc 251  Q
    ||||||| ||||||||||||| || |||||||||||  |  | |||| ||||| | |||||||||||||| |||| |||||||||||||    
T  32810902 caatttagtccctcaaatttacgaaatagcaaattaggctctgaaataaaagaacgtcaatcaatttagttcctcaatcaaaatatctc 32810990  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 229
Target Start/End: Original strand, 33643528 - 33643636
Alignment:
Q  121 gagtaaataagcattttggtcctcaaaattgtgaaggtcggtcaatttaatccctcaaatttatgatatagcaaattaatcctttaaattaaagagcctc 220  Q
    |||||||| | |||||| |||||||||||||| | | |||  ||||||| || ||||| |||| || |||||||| || ||| | |||||||||| | ||    
T  33643528 gagtaaatcatcattttagtcctcaaaattgtaaggctcgagcaatttactcgctcaagtttacgaaatagcaaagtagtccctcaaattaaagaacgtc 33643627  T
Q  221 aatcaattt 229  Q
    |||||||||    
T  33643628 aatcaattt 33643636  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 140 - 217
Target Start/End: Original strand, 53798256 - 53798332
Alignment:
Q  140 tcctcaaaattgtgaaggtcggtcaatttaatccctcaaatttatgatatagcaaattaatcctttaaattaaagagc 217  Q
    ||||| ||||||| | |||||||||||||| || | | |||||| || |||| |||||| ||||||||||||||||||    
T  53798256 tcctcgaaattgtaatggtcggtcaatttagtctc-ctaatttacgaaataggaaattagtcctttaaattaaagagc 53798332  T

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