View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9753_low_43 (Length: 250)
Name: NF9753_low_43
Description: NF9753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9753_low_43 |
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Alignment Details
Target: chr5 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 2607204 - 2606961
Alignment:
| Q |
1 |
tcgatatataagcacaaataagtcaatttaatccataacatgagaaagaaaaggaagggaagttgcgaaagtgaaactaaccagacgattccataagcac |
100 |
Q |
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| T |
2607204 |
tcgatatataagcacaaataagtcaatttaatccataacatgagaaagaaaaggaagggaagttgcgaaagtgaaactaaccagacgattccataagcac |
2607105 |
T |
|
| Q |
101 |
ctctaccgatagggcgaaggggaggaacatatttggaggacacttcaaacaagtttccatacaaactgtattgcacgtatcgacctttgtgagtgaaaac |
200 |
Q |
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| T |
2607104 |
ctctaccgatagggcgaagaggaggaacatatttggaggacacttcaaacaagtttccatacaaactgtattgcacgtatcgacctttgtgagtgaaaac |
2607005 |
T |
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| Q |
201 |
cttctttactaaatctctatcattattatcttggcctttgctac |
244 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
2607004 |
cttctttactaaatctctatcattattatcttggcttttgctac |
2606961 |
T |
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Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 80 - 163
Target Start/End: Original strand, 41338118 - 41338201
Alignment:
| Q |
80 |
accagacgattccataagcacctctaccgatagggcgaaggggaggaacatatttggaggacacttcaaacaagtttccataca |
163 |
Q |
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|||| ||||| |||||||| |||||||| |||||||||| ||| || ||||| || || ||||| ||||||||||||||||||| |
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| T |
41338118 |
accaaacgataccataagcgcctctaccaatagggcgaatgggtggcacatacttagaagacacctcaaacaagtttccataca |
41338201 |
T |
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