View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9753_low_44 (Length: 250)
Name: NF9753_low_44
Description: NF9753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9753_low_44 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 161; Significance: 6e-86; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 45 - 250
Target Start/End: Original strand, 3746855 - 3747062
Alignment:
| Q |
45 |
attcaactcataaatttttaattcaaatgaaactctatcagtcactacaactccaggtgacactattttatttaaattgaatagagcatttatcactaca |
144 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
3746855 |
attcaactcataaatttttaattcaaatgaaactctatcagtcactacaactccaggtgacactattttatttaaattgaatagaacatttatcactaca |
3746954 |
T |
|
| Q |
145 |
tatagaacaatagagtctggaattaaaaacactaatatactaataagcacattcattagttagt--tactaatgtcactaccaccttaaactagtgaatg |
242 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| | | | | |||||||||||||||||||||||||| |
|
|
| T |
3746955 |
tatagaacaatagagtctggaattaaaaagacgaatatactaataagcacattcattagttactaatggcactatcactaccaccttaaactagtgaatg |
3747054 |
T |
|
| Q |
243 |
actttcct |
250 |
Q |
| |
|
|||||||| |
|
|
| T |
3747055 |
actttcct |
3747062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University