View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9753_low_45 (Length: 249)

Name: NF9753_low_45
Description: NF9753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9753_low_45
NF9753_low_45
[»] chr5 (4 HSPs)
chr5 (19-249)||(1808033-1808263)
chr5 (34-244)||(14624086-14624296)
chr5 (19-177)||(7861960-7862119)
chr5 (42-217)||(5993234-5993409)
[»] chr4 (4 HSPs)
chr4 (41-249)||(48543668-48543875)
chr4 (35-249)||(52666205-52666419)
chr4 (34-80)||(42196794-42196840)
chr4 (36-90)||(45825952-45826006)
[»] chr6 (1 HSPs)
chr6 (19-223)||(8194678-8194883)
[»] chr3 (1 HSPs)
chr3 (19-114)||(43246254-43246350)
[»] chr8 (2 HSPs)
chr8 (69-229)||(9609229-9609389)
chr8 (23-109)||(11196135-11196222)
[»] chr7 (1 HSPs)
chr7 (34-177)||(35407237-35407382)
[»] chr2 (2 HSPs)
chr2 (25-223)||(34446110-34446311)
chr2 (99-241)||(13233133-13233275)
[»] chr1 (1 HSPs)
chr1 (34-225)||(12285953-12286144)


Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 19 - 249
Target Start/End: Complemental strand, 1808263 - 1808033
Alignment:
Q  19 caatctttagccatgactttctaataatagctatctcatttccataatggtgagtggaaacatcagcatactgcactaggtgaatagtatgcatggaatc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  1808263 caatctttagccatgactttctaataatagctatctcatttccataatggtgagtggaaacatcagcatactgcactaggtgaatagtatgcatgaaatc 1808164  T
Q  119 agtgtagcaaataatgtctctcagaccttcatcccaacaaatttgaatcccatacattattgccaagatttcggcatgaagaatatttgagtagccaata 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  1808163 agtgtagcaaataatgtctctcagaccttcatcccaacaaatttgaatcccatacattattgccaagatttcggcatgaagaatatttgagtagtcaata 1808064  T
Q  219 ttaccatgaaagccacacataaattgtccat 249  Q
    |||||||||||||||||||||||||||||||    
T  1808063 ttaccatgaaagccacacataaattgtccat 1808033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 34 - 244
Target Start/End: Original strand, 14624086 - 14624296
Alignment:
Q  34 actttctaataatagctatctcatttccataatggtgagtggaaacatcagcatactgcactaggtgaatagtatgcatggaatcagtgtagcaaataat 133  Q
    ||||||||||||||||||||||||||||||| | ||||||| |||||||| |||||| ||||| ||||||| |||||||||||| |||||| ||||||||    
T  14624086 actttctaataatagctatctcatttccatagttgtgagtgaaaacatcaacatactccactatgtgaataatatgcatggaattagtgtaacaaataat 14624185  T
Q  134 gtctctcagaccttcatcccaacaaatttgaatcccatacattattgccaagatttcggcatgaagaatatttgagtagccaatattaccatgaaagcca 233  Q
     |||||||||||||| ||||| |||||||||| ||||| ||||| |||||||| ||||||||||| |||||||||||| ||||||||||||| |||| ||    
T  14624186 atctctcagaccttcgtcccatcaaatttgaaccccatgcattaatgccaagagttcggcatgaataatatttgagtatccaatattaccataaaagtca 14624285  T
Q  234 cacataaattg 244  Q
    | |||||||||    
T  14624286 cgcataaattg 14624296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 19 - 177
Target Start/End: Original strand, 7861960 - 7862119
Alignment:
Q  19 caatctttagccatg-actttctaataatagctatctcatttccataatggtgagtggaaacatcagcatactgcactaggtgaatagtatgcatggaat 117  Q
    |||||||||| |||| ||||||||||||||| ||||||||||| | | ||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  7861960 caatctttagtcatgtactttctaataatagttatctcatttctacagtggcgagtggaaacatcagcatactgcactaggtgaatagtatgcatggaat 7862059  T
Q  118 cagtgtagcaaataatgtctctcagaccttcatcccaacaaatttgaatcccatacatta 177  Q
    | |||||  ||||||| ||||| || ||||||| |||||||||||||||| ||| |||||    
T  7862060 ctgtgtaataaataatatctctaaggccttcattccaacaaatttgaatctcatgcatta 7862119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 217
Target Start/End: Complemental strand, 5993409 - 5993234
Alignment:
Q  42 ataatagctatctcatttccataatggtgagtggaaacatcagcatactgcactaggtgaatagtatgcatggaatcagtgtagcaaataatgtctctca 141  Q
    ||||| ||||| ||||||||||| || |||||| ||||||   | |  || | ||| |||| |||||||||||| ||| | ||||||| ||||||  | |    
T  5993409 ataatggctatttcatttccatattgatgagtgaaaacatttacttgttgtagtagatgaaaagtatgcatggagtcaatatagcaaacaatgtcgttta 5993310  T
Q  142 gaccttcatcccaacaaatttgaatcccatacattattgccaagatttcggcatgaagaatatttgagtagccaat 217  Q
     |||||| ||||||||||| |||||||| ||||| |   |||| ||||  |||| ||||||||| ||||| |||||    
T  5993309 aaccttcgtcccaacaaatctgaatcccgtacatcaaaaccaaaatttttgcataaagaatattcgagtaaccaat 5993234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 141; Significance: 5e-74; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 41 - 249
Target Start/End: Complemental strand, 48543875 - 48543668
Alignment:
Q  41 aataatagctatctcatttccataatggtgagtggaaacatcagcatactgcactaggtgaatagtatgcatggaatcagtgtagcaaataatgtctctc 140  Q
    ||||||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||| | |||||||||| |||||||||| ||      
T  48543875 aataatagctatctcattttcatagtggtgagtggaaacctcagcatactgcactaggtgaatagtatgcacgaaatcagtgtaacaaataatgtttccg 48543776  T
Q  141 agaccttcatcccaacaaatttgaatcccatacattattgccaagatttcggcatgaagaatatttgagtagccaatattaccatgaaagccacacataa 240  Q
    ||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||| |||||||||||||||||  |||||| |||||    
T  48543775 agaccttcatcccaacaaatttgaatcccatgcattaatgtcaagatttcggcatgaagaatatttgaatagccaatattaccatg-gagccacgcataa 48543677  T
Q  241 attgtccat 249  Q
    |||||||||    
T  48543676 attgtccat 48543668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 35 - 249
Target Start/End: Original strand, 52666205 - 52666419
Alignment:
Q  35 ctttctaataatagctatctcatttccataatggtgagtggaaacatcagcatactgcactaggtgaatagtatgcatggaatcagtgtagcaaataatg 134  Q
    |||| |||||||| ||| ||||||| |||| ||| |||||||||||||||||| |||||||| |||||||||||||||||||| |||||| |||||||||    
T  52666205 ctttataataataactaactcattttcatagtggcgagtggaaacatcagcatgctgcactatgtgaatagtatgcatggaatgagtgtaacaaataatg 52666304  T
Q  135 tctctcagaccttcatcccaacaaatttgaatcccatacattattgccaagatttcggcatgaagaatatttgagtagccaatattaccatgaaagccac 234  Q
    ||||| |||||||  |||||||||||||||||| ||| ||||| ||||||||||||||||||||   |||||||||||||||||||||||||||||||||    
T  52666305 tctcttagacctttctcccaacaaatttgaatcgcatgcattaatgccaagatttcggcatgaatggtatttgagtagccaatattaccatgaaagccac 52666404  T
Q  235 acataaattgtccat 249  Q
    |||||||||||||||    
T  52666405 acataaattgtccat 52666419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 34 - 80
Target Start/End: Original strand, 42196794 - 42196840
Alignment:
Q  34 actttctaataatagctatctcatttccataatggtgagtggaaaca 80  Q
    ||||||| |||||||||||||| ||||||||||| ||||||||||||    
T  42196794 actttctgataatagctatctcgtttccataatgatgagtggaaaca 42196840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 36 - 90
Target Start/End: Complemental strand, 45826006 - 45825952
Alignment:
Q  36 tttctaataatagctatctcatttccataatggtgagtggaaacatcagcatact 90  Q
    ||||||||||||||||||||||||| ||| ||||||   ||||||||||||||||    
T  45826006 tttctaataatagctatctcatttctatagtggtgaactgaaacatcagcatact 45825952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 114; Significance: 6e-58; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 19 - 223
Target Start/End: Original strand, 8194678 - 8194883
Alignment:
Q  19 caatctttagccatg-actttctaataatagctatctcatttccataatggtgagtggaaacatcagcatactgcactaggtgaatagtatgcatggaat 117  Q
    |||||||| |||||| ||||||| ||||||||||||||||| ||||||||||||||| ||||||| ||||  || || || || ||||||||||||||||    
T  8194678 caatcttttgccatgtactttctgataatagctatctcattaccataatggtgagtgaaaacatctgcatgttggacgagatggatagtatgcatggaat 8194777  T
Q  118 cagtgtagcaaataatgtctctcagaccttcatcccaacaaatttgaatcccatacattattgccaagatttcggcatgaagaatatttgagtagccaat 217  Q
    ||||||| |||||||||||| | |||||||| |||||||| ||||||||||||| ||||| |||||| |||||||| ||||||||||| |||||||||||    
T  8194778 cagtgtaacaaataatgtcttttagaccttcctcccaacatatttgaatcccatgcattaatgccaaaatttcggcgtgaagaatattcgagtagccaat 8194877  T
Q  218 attacc 223  Q
    ||||||    
T  8194878 attacc 8194883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 77; Significance: 8e-36; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 19 - 114
Target Start/End: Complemental strand, 43246350 - 43246254
Alignment:
Q  19 caatctttagccatg-actttctaataatagctatctcatttccataatggtgagtggaaacatcagcatactgcactaggtgaatagtatgcatgg 114  Q
    ||||||||||||||| |||||||||| |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  43246350 caatctttagccatgtactttctaatgatagctatctcatttccatagtggtgagtggaaacatcagcatgctgcactaggtgaatagtatgcatgg 43246254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 69 - 229
Target Start/End: Original strand, 9609229 - 9609389
Alignment:
Q  69 tgagtggaaacatcagcatactgcactaggtgaatagtatgcatggaatcagtgtagcaaataatgtctctcagaccttcatcccaacaaatttgaatcc 168  Q
    |||||||||||||||  ||  ||||||||||||||||||||||||||||  ||||| ||||||||| || | |||||||| ||||||||||||||||||     
T  9609229 tgagtggaaacatcaagattttgcactaggtgaatagtatgcatggaattggtgtaacaaataatgccttttagaccttcctcccaacaaatttgaatca 9609328  T
Q  169 catacattattgccaagatttcggcatgaagaatatttgagtagccaatattaccatgaaa 229  Q
    ||| ||||| |   ||||||||| | |||||||||||||| ||| ||||||||||| ||||    
T  9609329 catgcattaatatgaagatttcgacgtgaagaatatttgaatagtcaatattaccacgaaa 9609389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 23 - 109
Target Start/End: Original strand, 11196135 - 11196222
Alignment:
Q  23 ctttagccatg-actttctaataatagctatctcatttccataatggtgagtggaaacatcagcatactgcactaggtgaatagtatg 109  Q
    ||||||||||| ||||| |||||||||||||||||||| || | ||||||||||||||||||||||| |||||| |||||||||||||    
T  11196135 ctttagccatgtactttttaataatagctatctcattttcacagtggtgagtggaaacatcagcatattgcactgggtgaatagtatg 11196222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 34 - 177
Target Start/End: Original strand, 35407237 - 35407382
Alignment:
Q  34 actttctaataatagctatctc--atttccataatggtgagtggaaacatcagcatactgcactaggtgaatagtatgcatggaatcagtgtagcaaata 131  Q
    ||||||||||||||||||||||  |||| |||| ||||||| |||| ||||| | |  | || ||  |||||| |||||||||||| | | || ||||||    
T  35407237 actttctaataatagctatctctcattttcatagtggtgagcggaagcatcaacgtgattcattaaatgaatattatgcatggaatgaatataacaaata 35407336  T
Q  132 atgtctctcagaccttcatcccaacaaatttgaatcccatacatta 177  Q
    ||||||||||||||||||| |||||||||||||||| |||| ||||    
T  35407337 atgtctctcagaccttcattccaacaaatttgaatctcatatatta 35407382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 25 - 223
Target Start/End: Complemental strand, 34446311 - 34446110
Alignment:
Q  25 ttagccatg-actttctaataatagctatctcatttccataatggtgagtggaaacatcagcatactgcactaggtgaatagtatgcatggaatcagtgt 123  Q
    ||||||||| ||||||| ||||||||||||||||| |||||  |||||| |||||||||||||     ||| || ||||||||||||||| |||  || |    
T  34446311 ttagccatgtactttctgataatagctatctcattcccatagcggtgaggggaaacatcagcacgtcacaccagatgaatagtatgcatgtaattcgtat 34446212  T
Q  124 agcaaataatgtctctcagaccttcatcc---caacaaatttgaatcccatacattattgccaagatttcggcatgaagaatatttgagtagccaatatt 220  Q
    | | |||||||||||| |||||||  |||    |||||||||||||||||| ||||| || |||||||||| | |||| ||||||   ||||||||||||    
T  34446211 aac-aataatgtctctgagacctttctcctaataacaaatttgaatcccatgcattaatgtcaagatttcgacgtgaaaaatattcatgtagccaatatt 34446113  T
Q  221 acc 223  Q
    |||    
T  34446112 acc 34446110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 99 - 241
Target Start/End: Complemental strand, 13233275 - 13233133
Alignment:
Q  99 tgaatagtatgcatggaatcagtgtagcaaataatgtctctcagaccttcatcccaacaaatttgaatcccatacattattgccaagatttcggcatgaa 198  Q
    ||||||||||  ||||||||| ||||| |||| |||| ||||| | |||| | |||||||| | ||||||| |  |  |  ||||||||||| |||||||    
T  13233275 tgaatagtattaatggaatcaatgtagtaaatgatgtttctcaaatcttccttccaacaaagtcgaatcccttgaagcaaagccaagatttcagcatgaa 13233176  T
Q  199 gaatatttgagtagccaatattaccatgaaagccacacataaa 241  Q
    ||||||| || ||  |||||||||||| |||  ||||||||||    
T  13233175 gaatattggaataaacaatattaccataaaatgcacacataaa 13233133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 34 - 225
Target Start/End: Complemental strand, 12286144 - 12285953
Alignment:
Q  34 actttctaataatagctatctcatttccataatggtgagtggaaacatcagcatactgcactaggtgaatagtatgcatggaatcagtgtagcaaataat 133  Q
    ||||||| ||| ||||||| |||||| | ||||| ||  || | ||||  ||||| || || || ||||||||||  ||||||||| |||||||||||||    
T  12286144 actttcttatagtagctatatcattttcgtaatgatggatgaagacatttgcataatgtacgagatgaatagtattaatggaatcaatgtagcaaataat 12286045  T
Q  134 gtctctcagaccttcatcccaacaaatttgaatcccatacattattgccaagatttcggcatgaagaatatttgagtagccaatattaccat 225  Q
    || || || | |||||| |||||||| |||||||||||  |  |  ||||| |||||  ||||||||||||| ||||| |||||||||||||    
T  12286044 gtttcgcaaaacttcattccaacaaagttgaatcccatgaagcaaagccaacatttcaacatgaagaatattcgagtaaccaatattaccat 12285953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University