View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9753_low_48 (Length: 243)
Name: NF9753_low_48
Description: NF9753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9753_low_48 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 13 - 243
Target Start/End: Complemental strand, 15617570 - 15617343
Alignment:
| Q |
13 |
catcaactactgaattcttttcgagaaacgcttcgttaaccacattccaaagacgagccctgcgccaaacttgcatagttaaagggcactcgaatttcga |
112 |
Q |
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| T |
15617570 |
catcaactactgaattcttttcgagaaacgcttcgttaaccacattccaaagacgagccctacgccaaacctgcatagttaaaggacactcgaatttcga |
15617471 |
T |
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| Q |
113 |
agcaaaaatatgagcaagatcctcatgaagaccaccacaatatattgacacaacttggggaatattttactcctttatcttaaaaccatacttggtttgg |
212 |
Q |
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| T |
15617470 |
aacaaa--tatgagcaagatcctcatgaagaccaccacaatatattgacacaacttggggaatatttcactcctttatcttaaaaccatacttggtttgg |
15617373 |
T |
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| Q |
213 |
taagcaccccacgatacgttttatagatcaa |
243 |
Q |
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| T |
15617372 |
taagca-cccacgatacgttttccagatcaa |
15617343 |
T |
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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 64
Target Start/End: Original strand, 43218793 - 43218844
Alignment:
| Q |
13 |
catcaactactgaattcttttcgagaaacgcttcgttaaccacattccaaag |
64 |
Q |
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| T |
43218793 |
catcaactgctgaattcttttcgagaaacacctcatgaaccacattccaaag |
43218844 |
T |
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