View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9753_low_5 (Length: 522)
Name: NF9753_low_5
Description: NF9753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9753_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 17 - 487
Target Start/End: Original strand, 38423307 - 38423773
Alignment:
| Q |
17 |
gtttggtggtttgaacttgatggagaagttttaaacattgaagtagtgggattgattggaatnnnnnnnnnnnnnntcaagtcgtgcgtgacgtgagttg |
116 |
Q |
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| T |
38423307 |
gtttggtggtttgaacttgatggagaagttttaaacattgaagtagtgggattgattgggatagagagagag----tcaagtcgtgcgtgacgtgagttg |
38423402 |
T |
|
| Q |
117 |
agtatacgcgtcttatgaaatgggaaatttagtagtatgtgccaactggatggatttcagtatctactcgtgtctggtaagtaagaccccttcgttctag |
216 |
Q |
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| T |
38423403 |
agtatacgcgtcttatgaaatgggaaatttagtagtatgtgccaactggatggatttcagtatctactcgtgtctggtaagtaagaccccttccttctag |
38423502 |
T |
|
| Q |
217 |
ttttctataaattcnnnnnnntgctaataagtgttgtgtattgatcaagatgcgtacggttcacaaaagaagctagaattcatctttaaaaagatgaatt |
316 |
Q |
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| T |
38423503 |
ttttctataaattcaaaaaaatgctaataattgttgtgtattgatcaagatg--tatggttcacaaaagaagctagaattcatctttaaaaagatgaatt |
38423600 |
T |
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| Q |
317 |
tttaactaataggttatttgacaaaaagaaaa--cagnnnnnnncaatgtaaaacttcaacttttattttctttaactagtatatcgtatcaccagttaa |
414 |
Q |
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|||||||||||| |||||||||||||| |||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
38423601 |
tttaactaatagattatttgacaaaaaaaaaaaacagtttttttcaatgtaaaactttaacttttattttctttaactagtatatcgtatcaccagttaa |
38423700 |
T |
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| Q |
415 |
cctccctaagaactcaaaattaaaattaacattccnnnnnnnnnatgttaacattcttttctctaactgaacc |
487 |
Q |
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| T |
38423701 |
cctccctaagaactcaaaattaaaattaacattcctttttttttatgttaacattcttttctctaactgaacc |
38423773 |
T |
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