View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9753_low_53 (Length: 239)
Name: NF9753_low_53
Description: NF9753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9753_low_53 |
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Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 40525456 - 40525677
Alignment:
| Q |
1 |
ctacaaggaaaggaaagaaaaggaacatttagctctgcatgaatctaagggaagcaattttcctacgttgtgnnnnnnncagatctcttagatgaatctc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
40525456 |
ctacaaggaaaggaaagaaaaggaacatttagctctgcatgaatctaagagaagcaattttcctacgttgtgaaaaaaacagatctcttagatgaatctc |
40525555 |
T |
|
| Q |
101 |
catgataaattcatgagcagacagatggtaagcaccatgtatgcaccataaatggcttcaatatttttaaagtatgaatatacaagagcaacacaagttt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40525556 |
catgataaattcatgagcagacagatggtaagcaccatgtatgcaccataaatggcttcaatatttttaaagtatgaatatacaagagcaacacaagttt |
40525655 |
T |
|
| Q |
201 |
caatctgaaatatcaacactac |
222 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
40525656 |
caatctgaaatatcaacactac |
40525677 |
T |
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