View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9753_low_6 (Length: 501)
Name: NF9753_low_6
Description: NF9753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9753_low_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 455; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 9 - 483
Target Start/End: Original strand, 55300002 - 55300476
Alignment:
| Q |
9 |
agcataggaatttcttggaagctccgactagagacggcacaagtataatagtaatgaaatgttattggttgaatggtagagtaagagaaagaaagaaaga |
108 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55300002 |
agcataggaatttcttggaagctccaactagagacggcacaagtataatagtaatgaaatgttattggttgaatggtagagtaagagaaagaaagaaaga |
55300101 |
T |
|
| Q |
109 |
gagaatgaaagtacctagcccgactcggaagcaatctgttggagatcgtcacatgatatcgcctactcgccacaatatgtcacgttccgcacggaggagg |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55300102 |
gagaatgaaagtacctagcccgactcggaagcaatctgttggagatcgtcacatgatatcgcctactcgccacaatatgtcacgttccgcacggaggagg |
55300201 |
T |
|
| Q |
209 |
aagaacagtggtcattggtggttgtcatcaatatcatggatgaagaaagaggttgactcatatgatatgactcatcatgctcacctctcttctgatagtc |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
55300202 |
aagaacagtggtcattggtggttgtcatcaatatcatggatgaagaaagaggttgactcatatgatatgactcatcatactcacctctcttctgatagtc |
55300301 |
T |
|
| Q |
309 |
cctactacaagggtctcaccgatcaatctcttgctattcctcatgaagaataccaagaggatgacaacaacaatatctcttcatcactgcgacctatcct |
408 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55300302 |
cctactacaagggtcttaccgatcaatctcttgctattcctcatgaagaataccaagaggatgacaacaacaatatctcttcatcactgcgacctatcct |
55300401 |
T |
|
| Q |
409 |
cgtttcatcatccccccacagtagtccttactacaaaggtcttaccgattactctcttgtcattgatgcctcttg |
483 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
55300402 |
cctttcatcatccccccacagtagtccttactacaaaggtcttaccgattattctcttgtcattgatgcctcttg |
55300476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University