View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9753_low_60 (Length: 219)
Name: NF9753_low_60
Description: NF9753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9753_low_60 |
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Alignment Details
Target: chr2 (Bit Score: 141; Significance: 4e-74; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 8 - 160
Target Start/End: Complemental strand, 3895197 - 3895045
Alignment:
| Q |
8 |
tccttggttctttcctctgcatcataagcataatctctagccttctctccagcattctcagccttctctgcagccctatttgttccttctctggctttat |
107 |
Q |
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| T |
3895197 |
tcctttgttctctcctttgcatcataagcataatctctagccttctctccagcattctcagccttctctgcagccctatttgttccttctctggctttat |
3895098 |
T |
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| Q |
108 |
cccacacagaacctgctgcttcattggttctgtcttttacctcataagcatag |
160 |
Q |
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| T |
3895097 |
cccacacagaacctgctgcttcattggttctgtcttttacctcataagcatag |
3895045 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 29 - 123
Target Start/End: Complemental strand, 3895056 - 3894962
Alignment:
| Q |
29 |
tcataagcataatctctagccttctctccagcattctcagccttctctgcagccctatttgttccttctctggctttatcccacacagaacctgc |
123 |
Q |
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| T |
3895056 |
tcataagcatagtctctagctttctctccagcattctctgccttctctgcagctctgtctgttccttctttggctttctcccacattgaacctgc |
3894962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 3895336 - 3895271
Alignment:
| Q |
1 |
cgctccttccttggttctttcctctgcatcataagcataatctctagccttctctccagcattctc |
66 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||| |||| |
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| T |
3895336 |
cgctccttccttggttctttcctttgcatcataagcataatctctagctttctccccagcactctc |
3895271 |
T |
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