View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9753_low_7 (Length: 482)
Name: NF9753_low_7
Description: NF9753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9753_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 132 - 468
Target Start/End: Complemental strand, 44869067 - 44868731
Alignment:
| Q |
132 |
gctaggataaagtgtgtctatttgtttaaaaacatggtgaatgctcaacagatgatagtttatgatggctcggttttacaaaggttataaggataaacag |
231 |
Q |
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| T |
44869067 |
gctaggataaagtgtgtccatttgtttaaaaacatggtgaatgctcaacagatgatagtttatgatggctcggttttacaaaggttataaggataaacag |
44868968 |
T |
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| Q |
232 |
cagaacatgattacattaatttccaatagaacaaacatgtataaatggaagaatcgacaatcattttttccaagtaggagcacatatatgaagttggaaa |
331 |
Q |
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| T |
44868967 |
cagaacatgattacattaatttccaatagaacaaacatgtataaatggaagaatcgacaatcattttttccaagtagaagcacatatatgaagctggaaa |
44868868 |
T |
|
| Q |
332 |
aataaacggctcaaaataaattcctgatatacatcaccagaatcgtctctagatagaaaactagaaaaacggaatacttactttggtgcagattgaagca |
431 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44868867 |
aataaacggctcaaaataaattcctgatatacatcatcagaatcgtctctagatagaaaactagaaaaacggaatacttactttggtgcagattgaagca |
44868768 |
T |
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| Q |
432 |
tttcatcctcagaatcatctctggacaattcatcctc |
468 |
Q |
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| T |
44868767 |
tttcatcctcagaatcatctctggacaattcatcctc |
44868731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 7 - 105
Target Start/End: Complemental strand, 44869192 - 44869094
Alignment:
| Q |
7 |
ccacttgcatattttctacttggtgggaattcacgaaacctccttgattttcactgcaaatgtttaattcaaccactaaggttatcagctaaaagcatt |
105 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
44869192 |
ccacttgcatattttctacttggtgggaattcacgaaacctccttgattttcactgcaaatgtttaattcaaccattaaggttatcagctaaaagcatt |
44869094 |
T |
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