View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9753_low_8 (Length: 461)
Name: NF9753_low_8
Description: NF9753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9753_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 17 - 297
Target Start/End: Original strand, 12869796 - 12870076
Alignment:
| Q |
17 |
gaagatatcgaagaagaattcggtgacaccggaatgttaaacacctccgatgagtccgggatgttagaactccggggtgacggaagagtgtgatgggttg |
116 |
Q |
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| T |
12869796 |
gaagatatcgaagaagaattcggtgacaccggagtgttaaacacctcggatgagtccgggatgttagaactcccgggtgacggaagagtgtgatgggttg |
12869895 |
T |
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| Q |
117 |
ttgttgttgtggcgacggtggaaacccaatccgataataaaaaagnnnnnnnnnnnnnnnnnatgtaatcatgggaacccaacaagtccatgaaaccaaa |
216 |
Q |
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| T |
12869896 |
ttgttgttgtggcgacggtgggaacccaatccgataataaaaaagtgttgttgttgttgttgatgtaatcatgggaacccaacaagtccatgaaaccaaa |
12869995 |
T |
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| Q |
217 |
agaagaagatttttggtcacaagaggaagatggcatggtatcaaagaaggtagagattgaaggttgaaaagggaataaaga |
297 |
Q |
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| T |
12869996 |
agaagaagatttttggtcacaagaggaagatggtatggtatcaaagaaggtagagattgaaggttgaaaagggaataaaga |
12870076 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 375 - 420
Target Start/End: Original strand, 12870157 - 12870202
Alignment:
| Q |
375 |
atgatgagttggtggggtttgtgtgcacctctctctgctcctcctc |
420 |
Q |
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| T |
12870157 |
atgatgagttggtggggtttgtgtgctcctctctcttctcctcctc |
12870202 |
T |
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