View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9754_high_2 (Length: 306)
Name: NF9754_high_2
Description: NF9754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9754_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 22365311 - 22365597
Alignment:
| Q |
1 |
ctattcatgaattttagttttagatcaacagtccaaattggaaccaacatataactgtataaatttaaaaaatctataacgaagttcaacaatttttcaa |
100 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
22365311 |
ctattcatgaattttagttttagatcaaaagtccaaattggaactaacatataactgtataaatttaaaaaatctataacgatgttcaacaatttttcaa |
22365410 |
T |
|
| Q |
101 |
tgaattcaaatcgacaaactgatgatctgaacaaatcaagagagaagatagaatgaaaaccatttatgttgtgtggtagtgagtgcacacaaatcaaacc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
22365411 |
tgaattcaaatcgacaaactgatgatctgaacaaatcaagagagaagatagaatgaaaatcatttatgttgtgtggtagtgagtgcacacaaatcaaacc |
22365510 |
T |
|
| Q |
201 |
attttgatagatacaaattatatggtccgctctttccgtcacataccatgaaagtggttctgacaaccgcaaattccacatatacct |
287 |
Q |
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| T |
22365511 |
attttgatagacacatattatatggtccgctctttccgccacataccatgaaagtggttctgacaaccgcaaattccacctatacct |
22365597 |
T |
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Target: chr1 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 2788582 - 2788754
Alignment:
| Q |
1 |
ctattcatgaattttagttttagatcaacagtccaaattggaaccaacatataactgtataaatttaaaaaatctataacgaagttcaacaatttttcaa |
100 |
Q |
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||||||||||||||||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
2788582 |
ctattcatgaattttagttttagattaaaaatccaaattggaaccaacatataactgtataaatttaaaaaatctataacgaagttcaacaatttttaaa |
2788681 |
T |
|
| Q |
101 |
tgaattcaaatcgacaaactgatgatctgaacaaatcaagagagaagatagaatgaaaaccatttatgttgtg |
173 |
Q |
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||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
2788682 |
tgaattcgaatcgacacactgatgatctgaacaaatcaagagagaagatagaatgaaaaccattcatgttgtg |
2788754 |
T |
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