View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9754_high_4 (Length: 263)
Name: NF9754_high_4
Description: NF9754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9754_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 17 - 251
Target Start/End: Original strand, 24154923 - 24155157
Alignment:
| Q |
17 |
agttaaatgctaaggattcaggacctgttagtggtgatggaagatagagtctatcaagtaatctgcaataagcaactatagatgatgaatagagtatgag |
116 |
Q |
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| T |
24154923 |
agttaaatgctaaggattcaggacctgttagtggtgatggaagatagagtctatcaagtaatctgcaataagcaactatagatgatgaatagagtatgag |
24155022 |
T |
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| Q |
117 |
ggagattaagatactaatgataacagctatgttgctagtcatgttgaacatgatgaccaacattaatgttgagctaaatttagtatcttaggtatatata |
216 |
Q |
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| T |
24155023 |
ggagattaagataccaatgataacagctatgttgctagtcatgttgaacatgatgaccaacattaatgttgagctaaatttagtatcttaggtatatata |
24155122 |
T |
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| Q |
217 |
taaaacaagtttgttaatgctgtaccttctctgct |
251 |
Q |
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| T |
24155123 |
taaaacaagtttgttaatgatgtaccttctttgct |
24155157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 21 - 170
Target Start/End: Original strand, 24143605 - 24143757
Alignment:
| Q |
21 |
aaatgctaaggattcaggacctgttagtggtgatggaagatagagtctatcaagtaatctgcaataagcaactatagatgatga---atagagtatgagg |
117 |
Q |
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|||||||| ||| || || |||||||||| || ||||||||||||||| || |||||| ||||||| ||||||||||||||||| ||||||||||||| |
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| T |
24143605 |
aaatgctagggactcggggcctgttagtgatggtggaagatagagtctgtccagtaatttgcaataggcaactatagatgatgaattatagagtatgagg |
24143704 |
T |
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| Q |
118 |
gagattaagatactaatgataacagctatgttgctagtcatgttgaacatgat |
170 |
Q |
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| T |
24143705 |
gagattaagatcccagtgataacagccatgttgctagacatgtttaacttgat |
24143757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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