View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9754_high_5 (Length: 257)
Name: NF9754_high_5
Description: NF9754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9754_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 31737450 - 31737203
Alignment:
| Q |
1 |
ccaattacgctctacaaagaatataataat---tccccaaaaatttaactactactctagacaaaatttatgataatctctttcctttcaacaaagctac |
97 |
Q |
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| T |
31737450 |
ccaattacgctctacaaagaatataataataattccacaaaaatttaactactactctaggcaaaatttatgataatctctttcctttcaacaaagctac |
31737351 |
T |
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| Q |
98 |
tttcaccttcttttcctgattcattcacattgtagaagcagaggtgataccaaatttatcagagtatttagttcgtgataataatggtgaaacaacttcc |
197 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
31737350 |
tttcaccttcttttcctgattcattcacattgtagaagcagaggtgataccaaatttatcagagtatttagttcgtgataataatggtgaaacaactgcc |
31737251 |
T |
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| Q |
198 |
atttgatgaagaaactcaacatcatgaaccaatggattctctgttctg |
245 |
Q |
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|||||||||||||||||||||||||||||||| |||||||| |||||| |
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| T |
31737250 |
atttgatgaagaaactcaacatcatgaaccaaaggattctcagttctg |
31737203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 3 - 245
Target Start/End: Complemental strand, 31703087 - 31702846
Alignment:
| Q |
3 |
aattacgctctacaaagaatataataat---tccccaaaaatttaactactactctagacaaaatttatgataatctctttcctttcaacaaagctactt |
99 |
Q |
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|||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||| || |||||||||||||||| |
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| T |
31703087 |
aattacgctctacaaagaatataataataattccacaaaaatttaactactactctaggcaaaatttatgataatctcttcccattcaacaaagctactt |
31702988 |
T |
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| Q |
100 |
tcaccttcttttcctgattcattcacattgtagaagcagaggtgataccaaatttatcagagtatttagttcgtgataataatggtgaaacaacttccat |
199 |
Q |
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| T |
31702987 |
tcaccttcttttcctaattca----cattgtagaagcagaggtgataccaaatttatcagagtatttagttcgtgataataatggtgaaacaacttccat |
31702892 |
T |
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| Q |
200 |
ttgatgaagaaactcaacatcatgaaccaatggattctctgttctg |
245 |
Q |
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|||||||||||||||||||||||||||||| |||||||| |||||| |
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| T |
31702891 |
ttgatgaagaaactcaacatcatgaaccaaaggattctcagttctg |
31702846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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