View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9754_low_1 (Length: 529)
Name: NF9754_low_1
Description: NF9754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9754_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 363; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 17 - 399
Target Start/End: Original strand, 32855571 - 32855953
Alignment:
| Q |
17 |
agttcaaaccttgtacatcaatataaaaatattatgttcataaaagcaagtattataaagtggactaaagcatgtatattgttatataagtttgtgaact |
116 |
Q |
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|||||||||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32855571 |
agttcaaaccttgtccaccaacataaaaatattatgttcataaaagcaagtattataaagtggactaaagcatgtatattgttatataagtttgtgaact |
32855670 |
T |
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| Q |
117 |
aaagcataaccaagtggaatccggggcgtgtctggtgttgaattgtgatttgctttgagactgtattataaagtttaaaagctcacatcaattaagagaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
32855671 |
aaagcataaccaagtggaatccggggcgtgtctggtgttgaattgtgatttgttttgagactgtattataaagtttaaaagctcacatcaatcaagagaa |
32855770 |
T |
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| Q |
217 |
gagttaccctgctctacatgctcaaatcatcattagtcattctgatactcaggtcctttccagctgaaaatatcaagtgctacctgttggggtggccaaa |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32855771 |
gagttaccctgctctacatgctcaaatcatcattagtcattctgatactcaggtcctttccagctgaaaatatcaagtgctacctgttggggtggccaaa |
32855870 |
T |
|
| Q |
317 |
ggttactaaatgcaacaacaggaaagcaggaatgtgtgcagtgcaagaccacatctcccacgcttgtagttttatttttccct |
399 |
Q |
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| T |
32855871 |
ggttactaaatgcaacaacaggaaagcaggaatgtgtgcagtgcaagaccacatctcccacgcttgtagttttatttttccct |
32855953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 149 - 334
Target Start/End: Original strand, 32850285 - 32850489
Alignment:
| Q |
149 |
tggtgttgaattgtgatttgctttgagactgtattataaagtttaaaagctcacatcaattaagagaagagttaccctg--------ctctacatgctca |
240 |
Q |
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| T |
32850285 |
tggtgttgaattgtgatttgttttgagactgtattataaagtttaaaagctcacatcaattgagagaagagttaccctgctctacgcctctacatgctca |
32850384 |
T |
|
| Q |
241 |
aatcatcattagtcattctgatac--------------tcaggtcctttccagctgaaaatatcaagtgctacctgttggggtggccaaaggttactaaa |
326 |
Q |
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| T |
32850385 |
a---atcattagtcatgctgatacaactttagggattatcaggtcctttccagctgaaaataccaactgctacctgttggggttgctaaaagttactaag |
32850481 |
T |
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| Q |
327 |
tgcaacaa |
334 |
Q |
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|||||||| |
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| T |
32850482 |
tgcaacaa |
32850489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 433 - 527
Target Start/End: Original strand, 32855987 - 32856081
Alignment:
| Q |
433 |
ccctttgaactaagataatatctccagctggaagnnnnnnnnnnnnnnnntatcttcaaagcactgtaactgttctgcactctgtggctactacc |
527 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32855987 |
ccctttgaactaagataatatctccagctggaagaaaaacaaaaagaaaatatcttcaaagcactgtaactgttctgcactctgtggctactacc |
32856081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 357 - 398
Target Start/End: Original strand, 32850520 - 32850561
Alignment:
| Q |
357 |
gtgcaagaccacatctcccacgcttgtagttttatttttccc |
398 |
Q |
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| T |
32850520 |
gtgcaagaccccatctcccacgattgtagttttatttttccc |
32850561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 433 - 466
Target Start/End: Original strand, 32850592 - 32850625
Alignment:
| Q |
433 |
ccctttgaactaagataatatctccagctggaag |
466 |
Q |
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| T |
32850592 |
ccctttgaactaagataatatctccagctggaag |
32850625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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