View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9754_low_10 (Length: 237)
Name: NF9754_low_10
Description: NF9754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9754_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 16153141 - 16153360
Alignment:
| Q |
1 |
caaattatgaccaataagctttgactcacagaaaaagaatctacnnnnnnnccaacacaatatattatccacatttaatcttataactaaagttacaaac |
100 |
Q |
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| T |
16153141 |
caaattatgaccaa---gctttgactcacagaaaaagaatctacaaaaaaaccaacacaatatattatccacctttaatcttataactaaagttacaaac |
16153237 |
T |
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| Q |
101 |
attaccaaagttcttcattgtcttcaattttcatacttgttaggctgatttaactatcaacaaagttttgaataataataaaagatagtagattatattc |
200 |
Q |
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| T |
16153238 |
attaccaaagttcttcattgtcttcaattttcatacttgttaggctgatttaactatcaacaaagttttgaataataataaaagatagtagattatattc |
16153337 |
T |
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| Q |
201 |
tcacaaccaatctaccttattgt |
223 |
Q |
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| T |
16153338 |
tcacaaccaatctaccttattgt |
16153360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 16 - 188
Target Start/End: Original strand, 16158164 - 16158338
Alignment:
| Q |
16 |
aagctttgactcacagaaaaagaatctacnnnnnnnccaacacaatatattatccacatttaatcttataactaaagttacaaacattaccaaagttctt |
115 |
Q |
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| T |
16158164 |
aagctttgactcacagaaaaagaatctacgaaaaa-ccaacacaatatatgatccacatttaatcttataactaaagttcaaaacattaccaaagttgtt |
16158262 |
T |
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| Q |
116 |
cattgtcttcaattttcatacttgttaggc-tgatttaactatcaacaaagttttga--ataataataaaagatag |
188 |
Q |
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| T |
16158263 |
cattgttttcaattttcatacttgttaggcttgatttaactatcaacaaagtttttaatataataataaaagatag |
16158338 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 110; Significance: 1e-55; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 67 - 223
Target Start/End: Complemental strand, 24386220 - 24386063
Alignment:
| Q |
67 |
atccacatttaatcttataactaaagttacaaacattaccaaagttcttcattgtcttcaattttcatacttgttaggct-gatttaactatcaacaaag |
165 |
Q |
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|||||||||||||||||| ||| |||| |||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |
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| T |
24386220 |
atccacatttaatcttattactgaagtctcaaaggttaccaaagttcttcattgtcttcaaccttcatacttgttaggcttgatttaactatcaacaaag |
24386121 |
T |
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| Q |
166 |
ttttgaataataataaaagatagtagattatattctcacaaccaatctaccttattgt |
223 |
Q |
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| T |
24386120 |
ttttgaataataataaaagatagtaggctatattctcacaaccaatctaccttattgt |
24386063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 73 - 123
Target Start/End: Complemental strand, 8774864 - 8774814
Alignment:
| Q |
73 |
atttaatcttataactaaagttacaaacattaccaaagttcttcattgtct |
123 |
Q |
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| T |
8774864 |
atttaatcttatatctaaagtcacaaacattactaaagtttttcattgtct |
8774814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 145
Target Start/End: Original strand, 48954630 - 48954666
Alignment:
| Q |
109 |
agttcttcattgtcttcaattttcatacttgttaggc |
145 |
Q |
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| T |
48954630 |
agttcttcgttgtcttcaatcttcatacttgttaggc |
48954666 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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