View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9754_low_13 (Length: 222)

Name: NF9754_low_13
Description: NF9754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9754_low_13
NF9754_low_13
[»] chr2 (14 HSPs)
chr2 (10-222)||(16152942-16153154)
chr2 (23-179)||(16158004-16158158)
chr2 (98-219)||(26655311-26655432)
chr2 (116-194)||(8684983-8685061)
chr2 (121-221)||(21823825-21823926)
chr2 (112-219)||(24216664-24216771)
chr2 (130-221)||(21822977-21823068)
chr2 (118-219)||(17418195-17418295)
chr2 (121-192)||(22312466-22312537)
chr2 (121-194)||(19563955-19564028)
chr2 (137-194)||(21548981-21549038)
chr2 (149-220)||(27766141-27766211)
chr2 (161-222)||(26654006-26654067)
chr2 (112-144)||(16157966-16157998)
[»] chr8 (5 HSPs)
chr8 (98-222)||(18565331-18565455)
chr8 (106-218)||(5825241-5825352)
chr8 (98-219)||(13644631-13644752)
chr8 (98-219)||(13745056-13745177)
chr8 (116-191)||(23433630-23433705)
[»] scaffold0211 (1 HSPs)
scaffold0211 (50-219)||(25040-25207)
[»] chr4 (6 HSPs)
chr4 (48-222)||(22317328-22317502)
chr4 (66-220)||(39981213-39981367)
chr4 (117-192)||(22223455-22223530)
chr4 (121-219)||(8911036-8911133)
chr4 (148-221)||(19052737-19052809)
chr4 (174-221)||(18777288-18777335)
[»] scaffold0004 (1 HSPs)
scaffold0004 (82-219)||(382133-382270)
[»] chr1 (2 HSPs)
chr1 (96-222)||(12439888-12440014)
chr1 (137-216)||(24285973-24286052)
[»] scaffold0084 (2 HSPs)
scaffold0084 (98-219)||(30638-30759)
scaffold0084 (117-219)||(18108-18210)
[»] chr5 (6 HSPs)
chr5 (98-222)||(9823639-9823763)
chr5 (98-218)||(19570263-19570383)
chr5 (82-219)||(22747755-22747891)
chr5 (48-220)||(22797726-22797898)
chr5 (95-221)||(24885875-24885999)
chr5 (137-221)||(12063262-12063346)
[»] scaffold0711 (1 HSPs)
scaffold0711 (98-219)||(2274-2395)
[»] chr7 (4 HSPs)
chr7 (98-219)||(19143450-19143571)
chr7 (98-219)||(20742849-20742970)
chr7 (121-215)||(3856480-3856573)
chr7 (148-192)||(8309851-8309896)
[»] chr6 (5 HSPs)
chr6 (120-222)||(34659350-34659452)
chr6 (117-220)||(21689509-21689612)
chr6 (98-219)||(17206297-17206416)
chr6 (50-144)||(19122454-19122548)
chr6 (107-220)||(10815324-10815435)
[»] scaffold0062 (1 HSPs)
scaffold0062 (50-222)||(980-1152)
[»] chr3 (8 HSPs)
chr3 (98-219)||(10878451-10878571)
chr3 (114-190)||(16201847-16201923)
chr3 (118-192)||(10917651-10917724)
chr3 (82-222)||(8711868-8712006)
chr3 (82-222)||(9063755-9063893)
chr3 (98-172)||(21528695-21528771)
chr3 (98-157)||(15332011-15332070)
chr3 (130-194)||(5628601-5628666)
[»] scaffold0032 (1 HSPs)
scaffold0032 (107-191)||(78734-78817)
[»] scaffold0121 (1 HSPs)
scaffold0121 (146-218)||(10818-10890)


Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 10 - 222
Target Start/End: Complemental strand, 16153154 - 16152942
Alignment:
Q  10 ttggtcataatttgaggtatgtagaatccgacacaatatctgaatgcagcggataaagtacagaacacgcaaataaagagatagggaaagagaaagcaga 109  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  16153154 ttggtcataatttgaggtatgtagaatccgacacaacatctgaatgcagcggataaagtacagaacacacaaataaagagatagggaaagagaaagcaga 16153055  T
Q  110 cgcaaagcaattttatactagttccttccacaacagaggagtagtccaatcccctttcacttcaaagggattacactataatcaccctgaattacaaatt 209  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  16153054 cgtaaagcaattttatactagttccttccacaacagaggagtagtccaatcccctttcacttcaaagggattacactataatcactctgaattacaaatt 16152955  T
Q  210 gctcaaggacact 222  Q
    |||||||||||||    
T  16152954 gctcaaggacact 16152942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 23 - 179
Target Start/End: Complemental strand, 16158158 - 16158004
Alignment:
Q  23 gaggtatgtagaatccgacacaatatctgaatgcagcggataaagtacagaacacgcaaataaagagatagggaaagagaaagcagacgcaaagcaattt 122  Q
    |||||||||||| || ||||||| |||  ||||||||||||||||||||  ||| ||| ||||||||||| ||||| ||||  ||| | |||||||||||    
T  16158158 gaggtatgtagattctgacacaacatcgaaatgcagcggataaagtaca--acatgcagataaagagataaggaaaaagaatacagtcacaaagcaattt 16158061  T
Q  123 tatactagttccttccacaacagaggagtagtccaatcccctttcacttcaaaggga 179  Q
    ||||||||||||| |||||||| | ||||||||||  |||||||||||| |||||||    
T  16158060 tatactagttcctcccacaacacatgagtagtccagccccctttcactttaaaggga 16158004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 98 - 219
Target Start/End: Complemental strand, 26655432 - 26655311
Alignment:
Q  98 agagaaagcagacgcaaagcaattttatactagttccttccacaacagaggagtagtccaatcccctttcacttcaaagggattacactataatcaccct 197  Q
    ||||| || |||| ||||||||||||||||| |||||| |||||||| |||||| ||||| ||||||| |||||  |||||||| |||||||||||| |     
T  26655432 agagagaggagacacaaagcaattttatactggttcctcccacaacacaggagtggtccagtccccttgcactttcaagggatttcactataatcacaca 26655333  T
Q  198 gaattacaaattgctcaaggac 219  Q
      |||||||||||  |||||||    
T  26655332 tgattacaaattgtccaaggac 26655311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 116 - 194
Target Start/End: Original strand, 8684983 - 8685061
Alignment:
Q  116 gcaattttatactagttccttccacaacagaggagtagtccaatcccctttcacttcaaagggattacactataatcac 194  Q
    ||||||||||| | |||||| |||||||| |||||||||||| ||||||| |||||| |||||||| ||||||||||||    
T  8684983 gcaattttatagtggttcctcccacaacacaggagtagtccagtccccttgcacttccaagggatttcactataatcac 8685061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 121 - 221
Target Start/End: Original strand, 21823825 - 21823926
Alignment:
Q  121 tttatactagttccttccacaacagaggagtagtccaatcccctttcac-ttcaaagggattacactataatcaccctgaattacaaattgctcaaggac 219  Q
    |||||||  |||||| |||||||| ||||||||||||||||||||  || ||||||| |||| |||||||||||| ||| ||||||| | ||||||||||    
T  21823825 tttatacatgttcctcccacaacacaggagtagtccaatccccttatactttcaaagagatttcactataatcactctggattacaactcgctcaaggac 21823924  T
Q  220 ac 221  Q
    ||    
T  21823925 ac 21823926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 112 - 219
Target Start/End: Complemental strand, 24216771 - 24216664
Alignment:
Q  112 caaagcaattttatactagttccttccacaacagaggagtagtccaatcccctttcactt-caaagggattacactataatcaccctgaattacaaattg 210  Q
    |||||||||||||| || ||| ||||||||||| |||||||||||| ||||| | ||||| ||||||| ||  | ||||||||| |||||||||||||||    
T  24216771 caaagcaattttattctggtttcttccacaacacaggagtagtccagtccccctgcacttgcaaaggg-ttttaatataatcactctgaattacaaattg 24216673  T
Q  211 ctcaaggac 219  Q
     ||||||||    
T  24216672 atcaaggac 24216664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 130 - 221
Target Start/End: Original strand, 21822977 - 21823068
Alignment:
Q  130 gttccttccacaacagaggagtagtccaatcccctttcacttcaaagggattacactataatcaccctgaattacaaattgctcaaggacac 221  Q
    |||||| |||||||| |||||||||||| |||| || |||||| |||||||| |||||||||||| ||  ||||||  ||||||||||||||    
T  21822977 gttcctcccacaacacaggagtagtccagtcccattgcacttccaagggatttcactataatcactctcgattacagcttgctcaaggacac 21823068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 118 - 219
Target Start/End: Complemental strand, 17418295 - 17418195
Alignment:
Q  118 aattttatactagttccttccacaacagaggagtagtccaatcccctttcacttcaaagggattacactataatcaccctgaattacaaattgctcaagg 217  Q
    ||||||||| | |||||| |||||||| |||||||||||| ||||||| | |||| |||| ||| |||||||||||| ||  ||||| ||||||||||||    
T  17418295 aattttatattggttcctcccacaacacaggagtagtccagtccccttgcgcttccaaggaatttcactataatcactcttgattac-aattgctcaagg 17418197  T
Q  218 ac 219  Q
    ||    
T  17418196 ac 17418195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 121 - 192
Target Start/End: Complemental strand, 22312537 - 22312466
Alignment:
Q  121 tttatactagttccttccacaacagaggagtagtccaatcccctttcacttcaaagggattacactataatc 192  Q
    |||||||  ||||||||||||||| | |||||||||||||||||| |||||  |||||||| || |||||||    
T  22312537 tttataccggttccttccacaacacatgagtagtccaatccccttgcactttcaagggatttcaatataatc 22312466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 121 - 194
Target Start/End: Original strand, 19563955 - 19564028
Alignment:
Q  121 tttatactagttccttccacaacagaggagtagtccaatcccctttcacttcaaagggattacactataatcac 194  Q
    |||||||| |||||| |||||||| | |||| ||||||||||||| |||||| |||||| | || |||||||||    
T  19563955 tttatactggttcctcccacaacacatgagtggtccaatccccttgcacttccaagggaattcattataatcac 19564028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 194
Target Start/End: Complemental strand, 21549038 - 21548981
Alignment:
Q  137 ccacaacagaggagtagtccaatcccctttcacttcaaagggattacactataatcac 194  Q
    |||| ||| ||||||||||||| |||||| |||||| |||||||| ||||||||||||    
T  21549038 ccacgacacaggagtagtccaacccccttacacttctaagggatttcactataatcac 21548981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 220
Target Start/End: Complemental strand, 27766211 - 27766141
Alignment:
Q  149 agtagtccaatcccctttcacttcaaagggattacactataatcaccctgaattacaaattgctcaaggaca 220  Q
    ||||||||| ||||||| |||||| |||| ||| |||||||||||| ||  ||||| |||||||||||||||    
T  27766211 agtagtccagtccccttacacttccaaggaatttcactataatcacactagattac-aattgctcaaggaca 27766141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 161 - 222
Target Start/End: Complemental strand, 26654067 - 26654006
Alignment:
Q  161 ccctttcacttcaaagggattacactataatcaccctgaattacaaattgctcaaggacact 222  Q
    ||||| |||||| ||| |||| ||||||||||||  || ||||||||||| |||||||||||    
T  26654067 cccttgcacttccaagtgatttcactataatcactttggattacaaattggtcaaggacact 26654006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 144
Target Start/End: Complemental strand, 16157998 - 16157966
Alignment:
Q  112 caaagcaattttatactagttccttccacaaca 144  Q
    |||||||||||||||||||||||| ||||||||    
T  16157998 caaagcaattttatactagttcctcccacaaca 16157966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 98 - 222
Target Start/End: Original strand, 18565331 - 18565455
Alignment:
Q  98 agagaaagcagacgcaaagcaattttatactagttccttccacaacagaggagtagtccaatcccctttcacttcaaagggattacactataatcaccct 197  Q
    ||||||| ||||| |||||||||||||||||||||||| |||||||| | |||||||||| ||||||| || ||| || ||||| ||||||||||||  |    
T  18565331 agagaaaacagacacaaagcaattttatactagttcctcccacaacacaagagtagtccagtccccttgcatttccaatggatttcactataatcactat 18565430  T
Q  198 gaattacaaattgctcaaggacact 222  Q
    | ||||||| |||||||||||||||    
T  18565431 ggattacaacttgctcaaggacact 18565455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 106 - 218
Target Start/End: Original strand, 5825241 - 5825352
Alignment:
Q  106 cagacgcaaagcaattttatactagttccttccacaacagaggagtagtccaatcccctttcacttcaaagggattacactataatcaccctgaattaca 205  Q
    ||||| ||||||||||| | ||| ||||||||||||||| | |||||||||| |||||||||||||  | |||||| |||||||||||| ||  ||||||    
T  5825241 cagacacaaagcaattt-agactggttccttccacaacacatgagtagtccagtcccctttcactttcaggggatttcactataatcactctcgattaca 5825339  T
Q  206 aattgctcaagga 218  Q
    | |||||||||||    
T  5825340 acttgctcaagga 5825352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 98 - 219
Target Start/End: Original strand, 13644631 - 13644752
Alignment:
Q  98 agagaaagcagacgcaaagcaattttatactagttccttccacaacagaggagtagtccaatcccctttcacttcaaagggattacactataatcaccct 197  Q
    |||||||| ||||  ||| ||||| |||||| |||||| |||||||| |||||||||||| ||| ||| |||||  |||||||| |||||||||||| |     
T  13644631 agagaaaggagacataaaacaattgtatactggttcctcccacaacacaggagtagtccagtccgcttgcactttcaagggatttcactataatcacaca 13644730  T
Q  198 gaattacaaattgctcaaggac 219  Q
     ||||||| ||||||| |||||    
T  13644731 taattacatattgctctaggac 13644752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 98 - 219
Target Start/End: Original strand, 13745056 - 13745177
Alignment:
Q  98 agagaaagcagacgcaaagcaattttatactagttccttccacaacagaggagtagtccaatcccctttcacttcaaagggattacactataatcaccct 197  Q
    |||||||| ||||  ||| ||||| |||||| |||||| |||||||| |||||||||||| ||| ||| |||||  |||||||| |||||||||||| |     
T  13745056 agagaaaggagacataaaacaattgtatactggttcctcccacaacacaggagtagtccagtccgcttgcactttcaagggatttcactataatcacaca 13745155  T
Q  198 gaattacaaattgctcaaggac 219  Q
     ||||||| ||||||| |||||    
T  13745156 taattacatattgctctaggac 13745177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 116 - 191
Target Start/End: Complemental strand, 23433705 - 23433630
Alignment:
Q  116 gcaattttatactagttccttccacaacagaggagtagtccaatcccctttcacttcaaagggattacactataat 191  Q
    ||||||||||| | |||||| |||||||| |||||||||||| | ||||| |||||| |||||||| |||||||||    
T  23433705 gcaattttatagtggttcctcccacaacacaggagtagtccagttcccttgcacttccaagggatttcactataat 23433630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0211 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 50 - 219
Target Start/End: Original strand, 25040 - 25207
Alignment:
Q  50 tgaatgcagcggataaagtacagaacacgcaaataaagagatagggaaagagaaagcagacgcaaagcaattttatactagttccttccacaacagagga 149  Q
    |||||||||||||| || |||| |||||  | ||||||||| || ||  || |||||| || |||| |||||||||| | |||||| |||||| | ||||    
T  25040 tgaatgcagcggattaaatacataacacaaagataaagagacagaga--gacaaagcaaacacaaaacaattttatattggttcctcccacaataaagga 25137  T
Q  150 gtagtccaatcccctttcacttcaaagggattacactataatcaccctgaattacaaattgctcaaggac 219  Q
    |||||||||||||||| |||||| ||||| || ||||||||||||  || ||||||||||||||||||||    
T  25138 gtagtccaatccccttgcacttccaaggggtttcactataatcactttggattacaaattgctcaaggac 25207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 48 - 222
Target Start/End: Complemental strand, 22317502 - 22317328
Alignment:
Q  48 tctgaatgcagcggataaagtacagaacacgcaaataaagagatagggaaagagaaagcagacgcaaagcaattttatactagttccttccacaacagag 147  Q
    |||||||||||||||| |||||||||||||  | |||||||||       |||||||| |||| |||| |||||||||||| |||||| | ||||   ||    
T  22317502 tctgaatgcagcggattaagtacagaacacaaagataaagagacgaaacgagagaaagtagacacaaaacaattttatactggttcctcctacaatccag 22317403  T
Q  148 gagtagtccaatcccctttcacttcaaagggattacactataatcaccctgaattacaaattgctcaaggacact 222  Q
    |||||||||| || | || |||||| |||||||| |||||||||||| ||| |||||||||||||||||||||||    
T  22317402 gagtagtccagtctcattgcacttccaagggatttcactataatcactctggattacaaattgctcaaggacact 22317328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 66 - 220
Target Start/End: Complemental strand, 39981367 - 39981213
Alignment:
Q  66 agtacagaacacgcaaataaagagatagggaaagagaaagcagacgcaaagcaattttatactagttccttccacaacagaggagtagtccaatcccctt 165  Q
    |||||| |||||||| |||||||||||| |||| |||||| ||||  ||| ||||||||||||   |||||| ||||   |||||||||||| ||| |||    
T  39981367 agtacaaaacacgcagataaagagatagagaaaaagaaagtagacataaaacaattttatactgactccttctacaatccaggagtagtccagtccactt 39981268  T
Q  166 tcacttcaaagggattacactataatcaccctgaattacaaattgctcaaggaca 220  Q
     |||||| |||| ||| |||||||||||    | |||||||| ||||||||||||    
T  39981267 gcacttccaaggaatttcactataatcataaaggattacaaaatgctcaaggaca 39981213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 117 - 192
Target Start/End: Complemental strand, 22223530 - 22223455
Alignment:
Q  117 caattttatactagttccttccacaacagaggagtagtccaatcccctttcacttcaaagggattacactataatc 192  Q
    |||||||||||| |||||| |||||||| |||||||||| | ||| ||| |||||| |||||||| ||||||||||    
T  22223530 caattttatactggttcctcccacaacacaggagtagtcaagtcctcttgcacttccaagggatttcactataatc 22223455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 121 - 219
Target Start/End: Original strand, 8911036 - 8911133
Alignment:
Q  121 tttatactagttccttccacaacagaggagtagtccaatcccctttcacttcaaagggattacactataatcaccctgaattacaaattgctcaaggac 219  Q
    |||||||| |||||| |||||||| ||||||| ||||  |||||| |||||| |||||||| |||||||||||| |   |||||||||||||| |||||    
T  8911036 tttatactggttcctcccacaacacaggagtaatccag-ccccttacacttctaagggatttcactataatcacacaagattacaaattgctctaggac 8911133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 148 - 221
Target Start/End: Original strand, 19052737 - 19052809
Alignment:
Q  148 gagtagtccaatcccctttcacttcaaagggattacactataatcaccctgaattacaaattgctcaaggacac 221  Q
    |||||||||| ||||||| |||||| |||||||| |||||||||||| |   ||||| ||||||||||||||||    
T  19052737 gagtagtccagtccccttgcacttccaagggatttcactataatcacacaagattac-aattgctcaaggacac 19052809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 221
Target Start/End: Complemental strand, 18777335 - 18777288
Alignment:
Q  174 aagggattacactataatcaccctgaattacaaattgctcaaggacac 221  Q
    |||||||| ||||||||||||  |||||||||| ||||||||||||||    
T  18777335 aagggatttcactataatcactttgaattacaacttgctcaaggacac 18777288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 82 - 219
Target Start/End: Original strand, 382133 - 382270
Alignment:
Q  82 ataaagagatagggaaagagaaagcagacgcaaagcaattttatactagttccttccacaacagaggagtagtccaatcccctttcacttcaaagggatt 181  Q
    |||||||||||  || ||||| ||||||| |||| ||||  |||||||||||||||||||||| |||||||||||| ||||||| || ||| ||| ||||    
T  382133 ataaagagatatagagagagatagcagacacaaaacaatcatatactagttccttccacaacacaggagtagtccactccccttgcagttctaagagatt 382232  T
Q  182 acactataatcaccctgaattacaaattgctcaaggac 219  Q
     |||||||||||| |   ||||||||||||||||||||    
T  382233 tcactataatcactcatgattacaaattgctcaaggac 382270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 9e-23; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 96 - 222
Target Start/End: Complemental strand, 12440014 - 12439888
Alignment:
Q  96 aaagagaaagcagacgcaaagcaattttatactagttccttccacaacagaggagtagtccaatcccctttcacttcaaagggattacactataatcacc 195  Q
    ||||||||| ||||  |||| ||||||||||||||||||| ||||||   ||||||| |||||||| ||| |||||| |||||||| ||||||||||||     
T  12440014 aaagagaaaacagagacaaaacaattttatactagttcctcccacaattcaggagtactccaatcctcttgcacttccaagggatttcactataatcact 12439915  T
Q  196 ctgaattacaaattgctcaaggacact 222  Q
     || |||||||| |||||||| |||||    
T  12439914 atggattacaaaatgctcaagcacact 12439888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 216
Target Start/End: Complemental strand, 24286052 - 24285973
Alignment:
Q  137 ccacaacagaggagtagtccaatcccctttcacttcaaagggattacactataatcaccctgaattacaaattgctcaag 216  Q
    ||||||||  ||||||||||| ||||||| |||||| || |||||  ||| ||||||| ||| |||| ||||||||||||    
T  24286052 ccacaacaatggagtagtccagtccccttacacttccaaaggattttactgtaatcactctggattaaaaattgctcaag 24285973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 98 - 219
Target Start/End: Complemental strand, 30759 - 30638
Alignment:
Q  98 agagaaagcagacgcaaagcaattttatactagttccttccacaacagaggagtagtccaatcccctttcacttcaaagggattacactataatcaccct 197  Q
    |||||||||| || |||| |||||||||| | |||||| || ||| | |||||||||||||||||||| |||||| ||||| || ||||||||| ||  |    
T  30759 agagaaagcaaacacaaatcaattttatattggttcctccctcaaaaaaggagtagtccaatccccttgcacttccaaggggtttcactataattacttt 30660  T
Q  198 gaattacaaattgctcaaggac 219  Q
    | ||||||||||||||||||||    
T  30659 ggattacaaattgctcaaggac 30638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 117 - 219
Target Start/End: Complemental strand, 18210 - 18108
Alignment:
Q  117 caattttatactagttccttccacaacagaggagtagtccaatcccctttcacttcaaagggattacactataatcaccctgaattacaaattgctcaag 216  Q
    |||||||||| | |||||| | |||||| |||||||||| | || ||||  ||||| ||| | || |||||||||||| ||| |||| ||||||||||||    
T  18210 caattttatattggttcctcctacaacaaaggagtagtcgagtctccttgtacttccaagaggtttcactataatcactctggattaaaaattgctcaag 18111  T
Q  217 gac 219  Q
    |||    
T  18110 gac 18108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 1e-21; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 98 - 222
Target Start/End: Original strand, 9823639 - 9823763
Alignment:
Q  98 agagaaagcagacgcaaagcaattttatactagttccttccacaacagaggagtagtccaatcccctttcacttcaaagggattacactataatcaccct 197  Q
    |||||||||||||  ||| ||||||||||||  ||||| |||||||| || |||||||||| |||||| |||||  |||||||| |||||| ||||| |     
T  9823639 agagaaagcagacataaaacaattttatactgattcctcccacaacacagaagtagtccaacccccttgcactttcaagggatttcactatcatcacaca 9823738  T
Q  198 gaattacaaattgctcaaggacact 222  Q
      |||||||||||||||||||||||    
T  9823739 tgattacaaattgctcaaggacact 9823763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 98 - 218
Target Start/End: Complemental strand, 19570383 - 19570263
Alignment:
Q  98 agagaaagcagacgcaaagcaattttatactagttccttccacaacagaggagtagtccaatcccctttcacttcaaagggattacactataatcaccct 197  Q
    |||||||||||   ||||| ||||||||| | |||||| ||||||||||||||||||||| || | || |||||  || ||||| |||||||||||| ||    
T  19570383 agagaaagcaggaacaaaggaattttatatttgttcctcccacaacagaggagtagtccagtctcattgcactttcaatggatttcactataatcactct 19570284  T
Q  198 gaattacaaattgctcaagga 218  Q
     ||||||||||||||||||||    
T  19570283 aaattacaaattgctcaagga 19570263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 82 - 219
Target Start/End: Original strand, 22747755 - 22747891
Alignment:
Q  82 ataaagagatagggaaagagaaagcagacgcaaagcaattttatactagttccttccacaacagaggagtagtccaatcccctttcacttcaaagggatt 181  Q
    |||||||||||  |||||||||||||||| |||||| | |||||| | |||||| ||| |||| | |||||||||| ||||||| |||||| ||||||||    
T  22747755 ataaagagataaagaaagagaaagcagacacaaagcga-tttatattggttcctcccataacacaagagtagtccagtccccttgcacttccaagggatt 22747853  T
Q  182 acactataatcaccctgaattacaaattgctcaaggac 219  Q
     ||||||||| ||   | |||||||||| |||||||||    
T  22747854 tcactataataacataggattacaaatttctcaaggac 22747891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 48 - 220
Target Start/End: Complemental strand, 22797898 - 22797726
Alignment:
Q  48 tctgaatgcagcggataaagtacagaacacgcaaataaagagatagggaaagagaaagcagacgcaaagcaattttatactagttccttccacaacagag 147  Q
    ||||| ||||||||||||  |||| |||||  | ||||||||||||||| |||||||| |||| || | ||||||||| || ||| || |  |||   ||    
T  22797898 tctgagtgcagcggataagatacaaaacacaaatataaagagatagggagagagaaagaagacacacaacaattttatcctggtttctcctgcaatctag 22797799  T
Q  148 gagtagtccaatcccctttcacttcaaagggattacactataatcac-cctgaattacaaattgctcaaggaca 220  Q
    |||||||||| ||||||| |||||  |||||||| ||||||| ||||  ||| |||||||||| ||||||||||    
T  22797798 gagtagtccagtccccttgcacttacaagggatttcactatagtcacaactg-attacaaatttctcaaggaca 22797726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 95 - 221
Target Start/End: Complemental strand, 24885999 - 24885875
Alignment:
Q  95 gaaagagaaagcagacgcaaagcaattttatactagttccttccacaacagaggagtagtccaatcccctttcacttcaaagggattacactataatcac 194  Q
    |||||||||  ||||| ||||||||||| ||| | ||| || | |||||| || |||| || |||||| || |||||| |||||||| ||||||||||||    
T  24885999 gaaagagaagacagacacaaagcaattt-ataatggtttctcctacaacacagaagtattctaatccctttgcacttccaagggatttcactataatcac 24885901  T
Q  195 cctgaattacaaattgctcaaggacac 221  Q
     ||| ||||||| ||||| ||||||||    
T  24885900 tctg-attacaatttgcttaaggacac 24885875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 221
Target Start/End: Complemental strand, 12063346 - 12063262
Alignment:
Q  137 ccacaacagaggagtagtccaatcccctttcacttcaaagggattacactataatcaccctgaattacaaattgctcaaggacac 221  Q
    |||||||| ||||||| |||| ||| ||| |||||  |||||||| |||||||||||| ||  ||||||| || |||||||||||    
T  12063346 ccacaacacaggagtactccagtcctcttgcactttcaagggatttcactataatcactctagattacaacttactcaaggacac 12063262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0711 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold0711
Description:

Target: scaffold0711; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 98 - 219
Target Start/End: Complemental strand, 2395 - 2274
Alignment:
Q  98 agagaaagcagacgcaaagcaattttatactagttccttccacaacagaggagtagtccaatcccctttcacttcaaagggattacactataatcaccct 197  Q
    ||||| |||||||  |||| ||||||||||| |||||| ||| |||| | |||||||| | ||||||| |||||| ||  |||| |||||||||||| ||    
T  2395 agagagagcagacaaaaagaaattttatactggttcctcccagaacatatgagtagtctagtccccttgcacttccaaaagatttcactataatcactct 2296  T
Q  198 gaattacaaattgctcaaggac 219  Q
    | ||||||||||||||||||||    
T  2295 ggattacaaattgctcaaggac 2274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 9e-20; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 98 - 219
Target Start/End: Complemental strand, 19143571 - 19143450
Alignment:
Q  98 agagaaagcagacgcaaagcaattttatactagttccttccacaacagaggagtagtccaatcccctttcacttcaaagggattacactataatcaccct 197  Q
    |||||||| |||| || |||||||||||||  |||||| |||||||| | ||||||| || | ||||| |||||| |||||||| |||||||||||| ||    
T  19143571 agagaaagaagacacagagcaattttatacaggttcctcccacaacacaagagtagttcagttcccttgcacttccaagggatttcactataatcactct 19143472  T
Q  198 gaattacaaattgctcaaggac 219  Q
      |||||||||| |||||||||    
T  19143471 agattacaaatttctcaaggac 19143450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 98 - 219
Target Start/End: Complemental strand, 20742970 - 20742849
Alignment:
Q  98 agagaaagcagacgcaaagcaattttatactagttccttccacaacagaggagtagtccaatcccctttcacttcaaagggattacactataatcaccct 197  Q
    |||||||| |||| || |||||||||||||  |||||| |||||||| | ||||||| || | ||||| |||||| |||||||| |||||||||||| ||    
T  20742970 agagaaagaagacacagagcaattttatacaggttcctcccacaacacaagagtagttcagttcccttgcacttccaagggatttcactataatcactct 20742871  T
Q  198 gaattacaaattgctcaaggac 219  Q
      |||||||||| |||||||||    
T  20742870 agattacaaatttctcaaggac 20742849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 121 - 215
Target Start/End: Complemental strand, 3856573 - 3856480
Alignment:
Q  121 tttatactagttccttccacaacagaggagtagtccaatcccctttcacttcaaagggattacactataatcaccctgaattacaaattgctcaa 215  Q
    ||||||||  || ||||||||||| | |||||||||||||||||| |||||  ||| |||| |||||||||| | || |||||| ||||||||||    
T  3856573 tttatactgatttcttccacaacataagagtagtccaatccccttgcactttcaagagatttcactataatctcactaaattac-aattgctcaa 3856480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 148 - 192
Target Start/End: Complemental strand, 8309896 - 8309851
Alignment:
Q  148 gagtagtccaatcccctttcactt-caaagggattacactataatc 192  Q
    |||||||||||||||||| ||||| |||||||||| ||||||||||    
T  8309896 gagtagtccaatccccttgcacttccaaagggatttcactataatc 8309851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 5e-18; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 120 - 222
Target Start/End: Original strand, 34659350 - 34659452
Alignment:
Q  120 ttttatactagttccttccacaacagaggagtagtccaatcccctttcacttcaaagggattacactataatcaccctgaattacaaattgctcaaggac 219  Q
    ||||||||| |||||| |||||||| | |||||||||| |||||||  ||||| |||||||| ||||||||||||  || |||||  |||||||||||||    
T  34659350 ttttatactggttcctcccacaacacaagagtagtccagtccccttgtacttctaagggatttcactataatcactatggattacgcattgctcaaggac 34659449  T
Q  220 act 222  Q
    |||    
T  34659450 act 34659452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 117 - 220
Target Start/End: Complemental strand, 21689612 - 21689509
Alignment:
Q  117 caattttatactagttccttccacaacagaggagtagtccaatcccctttcacttcaaagggattacactataatcac-cctgaattacaaattgctcaa 215  Q
    |||||||||||| ||||||   ||||   |||||||||||| ||||||| |||||| |||||||| ||||||||||||  ||| ||||||||||||||||    
T  21689612 caattttatactggttcctcttacaatcaaggagtagtccagtccccttccacttccaagggatttcactataatcacaactg-attacaaattgctcaa 21689514  T
Q  216 ggaca 220  Q
     ||||    
T  21689513 agaca 21689509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 98 - 219
Target Start/End: Original strand, 17206297 - 17206416
Alignment:
Q  98 agagaaagcagacgcaaagcaattttatactagttccttccacaacagaggagtagtccaatcccctttcacttcaaagggattacactataatcaccct 197  Q
    ||||||||||||| ||  | |||||||||||||||||| |||||| | ||||||||| ||  || ||| |||||| |||||||| ||| | |||||| ||    
T  17206297 agagaaagcagacaca--gtaattttatactagttcctcccacaatataggagtagttcagcccacttgcacttccaagggatttcaccacaatcactct 17206394  T
Q  198 gaattacaaattgctcaaggac 219  Q
    | |||||| | || ||||||||    
T  17206395 ggattacatactgatcaaggac 17206416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 50 - 144
Target Start/End: Original strand, 19122454 - 19122548
Alignment:
Q  50 tgaatgcagcggataaagtacagaacacgcaaataaagagatagggaaagagaaagcagacgcaaagcaattttatactagttccttccacaaca 144  Q
    ||||||||||| || || |||||  |||  | ||||||||| |  || ||||||||||||| ||||||| |||||||||||||||| ||||||||    
T  19122454 tgaatgcagcgaattaaatacagttcacaaagataaagagacacagagagagaaagcagacacaaagcacttttatactagttcctcccacaaca 19122548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 107 - 220
Target Start/End: Complemental strand, 10815435 - 10815324
Alignment:
Q  107 agacgcaaagcaattttatactagttccttccacaacagaggagtagtccaatcccctttcacttcaaagggattacactataatcaccctgaattacaa 206  Q
    ||||||||| |||||| |||||||||||||| | ||   |||||||||||| |||||||  | ||| |||||||| |||||||||  | ||  ||||| |    
T  10815435 agacgcaaaacaattt-atactagttccttctaaaaattaggagtagtccagtccccttgtaattccaagggatttcactataatatcactagattac-a 10815338  T
Q  207 attgctcaaggaca 220  Q
    ||||||||||||||    
T  10815337 attgctcaaggaca 10815324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 50 - 222
Target Start/End: Original strand, 980 - 1152
Alignment:
Q  50 tgaatgcagcggataaagtacagaacacgcaaataaagagatagggaaagagaaagcagacgcaaagcaattttatactagttccttccacaacagagga 149  Q
    |||||| ||||||| |  || ||||||| || |||||||||||  ||||||||| ||| || |||| |||||||||| | |||||| | ||||   ||||    
T  980 tgaatgtagcggattagatatagaacacacatataaagagataaagaaagagaaggcaaacacaaaacaattttatattggttcctcctacaatccagga 1079  T
Q  150 gtagtccaatcccctttcacttcaaagggattacactataatcaccctgaattacaaattgctcaaggacact 222  Q
    |||||||| || |||| |||||| ||| |||| |||||| ||||| |   |||||||||| ||||||||||||    
T  1080 gtagtccagtctccttacacttccaagagatttcactatgatcacacacgattacaaatttctcaaggacact 1152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 98 - 219
Target Start/End: Complemental strand, 10878571 - 10878451
Alignment:
Q  98 agagaaagcagacgcaaagcaattttatactagttccttccacaacagaggagtagtccaatcccctttcacttcaaagggattacactataatcaccct 197  Q
    |||||||||| || ||||| |||||||||||  ||||| ||| |||| | ||||||| || |||| || |||||| ||| |||| |||||||||||| ||    
T  10878571 agagaaagcatacacaaagaaattttatactctttcctcccataacacatgagtagttcagtccc-ttgcacttccaagcgatttcactataatcactct 10878473  T
Q  198 gaattacaaattgctcaaggac 219  Q
    | ||||||||||| ||||||||    
T  10878472 ggattacaaattgttcaaggac 10878451  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 114 - 190
Target Start/End: Complemental strand, 16201923 - 16201847
Alignment:
Q  114 aagcaattttatactagttccttccacaacagaggagtagtccaatcccctttcacttcaaagggattacactataa 190  Q
    ||||||||||||||| |||| | | |||||| ||||||| |||| ||||||| |||||| |||||||| ||||||||    
T  16201923 aagcaattttatactggttcatcctacaacacaggagtaatccagtccccttgcacttccaagggatttcactataa 16201847  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 118 - 192
Target Start/End: Original strand, 10917651 - 10917724
Alignment:
Q  118 aattttatactagttccttccacaacagaggagtagtccaatcccctttcacttcaaagggattacactataatc 192  Q
    |||||||||||||||||| |||||||| |||||||||||| | ||||| | |||| |||||||| || |||||||    
T  10917651 aattttatactagttcctcccacaacacaggagtagtccagt-cccttgctcttccaagggatttcattataatc 10917724  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 82 - 222
Target Start/End: Complemental strand, 8712006 - 8711868
Alignment:
Q  82 ataaagagatagggaaagagaaagcagacgcaaagcaattttatactagttccttccacaacagaggagtagtccaatcccctttcacttcaaagggatt 181  Q
    |||||||||||| || | | ||||||||| |||  |||||||||||  |||||| | ||||   |||||||||||| ||||||| | |||| ||||||||    
T  8712006 ataaagagatagagataaataaagcagacacaa--caattttataccggttcctcctacaatgcaggagtagtccagtccccttgcgcttccaagggatt 8711909  T
Q  182 acactataatcaccctgaattacaaattgctcaaggacact 222  Q
      | |||||||||     |||||||||||||||||||||||    
T  8711908 taattataatcacatatgattacaaattgctcaaggacact 8711868  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 82 - 222
Target Start/End: Complemental strand, 9063893 - 9063755
Alignment:
Q  82 ataaagagatagggaaagagaaagcagacgcaaagcaattttatactagttccttccacaacagaggagtagtccaatcccctttcacttcaaagggatt 181  Q
    |||||||||||| || | | ||||||||| |||  |||||||||||  |||||| | ||||   |||||||||||| ||||||| | |||| ||||||||    
T  9063893 ataaagagatagagataaataaagcagacacaa--caattttataccggttcctcctacaatgcaggagtagtccagtccccttgcgcttccaagggatt 9063796  T
Q  182 acactataatcaccctgaattacaaattgctcaaggacact 222  Q
      | |||||||||     |||||||||||||||||||||||    
T  9063795 taattataatcacatatgattacaaattgctcaaggacact 9063755  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 172
Target Start/End: Complemental strand, 21528771 - 21528695
Alignment:
Q  98 agagaaagcagacgcaaagcaattttatactagttccttccacaac--agaggagtagtccaatcccctttcacttc 172  Q
    ||||||||||||| ||||||||||||||||| |||||| | |||||  | || ||||||||| ||||||| ||||||    
T  21528771 agagaaagcagacacaaagcaattttatactggttcctcctacaacatatagtagtagtccagtccccttgcacttc 21528695  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 157
Target Start/End: Complemental strand, 15332070 - 15332011
Alignment:
Q  98 agagaaagcagacgcaaagcaattttatactagttccttccacaacagaggagtagtcca 157  Q
    |||||||||||||  |||||||||||||||| |||||| |||||||| | || |||||||    
T  15332070 agagaaagcagacaaaaagcaattttatactggttcctcccacaacacatgattagtcca 15332011  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 130 - 194
Target Start/End: Complemental strand, 5628666 - 5628601
Alignment:
Q  130 gttccttccacaacagaggagtagtccaatcccctttcacttcaaagg-gattacactataatcac 194  Q
    |||||||||||||||  | ||||||||| ||||||| |||||| |||| |||| ||||||||||||    
T  5628666 gttccttccacaacacggaagtagtccagtccccttgcacttccaaggagatttcactataatcac 5628601  T

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Target: scaffold0032 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 191
Target Start/End: Original strand, 78734 - 78817
Alignment:
Q  107 agacgcaaagcaattttatactagttccttccacaacagaggagtagtccaatcccctttcacttcaaagggattacactataat 191  Q
    ||||||||||||| |||||| |||||||| | |||||| | |||||||||| ||| ||| |||||| ||||||||  ||||||||    
T  78734 agacgcaaagcaa-tttataatagttcctcctacaacacatgagtagtccagtcctcttgcacttccaagggattttactataat 78817  T

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Target: scaffold0121 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 218
Target Start/End: Complemental strand, 10890 - 10818
Alignment:
Q  146 aggagtagtccaatcccctttcacttcaaagggattacactataatcaccctgaattacaaattgctcaagga 218  Q
    |||||||||||| ||||||| ||||||| |||| || |||||||||||  ||  ||||||| ||| |||||||    
T  10890 aggagtagtccagtccccttgcacttcacagggttttcactataatcaatcttgattacaatttgttcaagga 10818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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