View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9754_low_14 (Length: 216)

Name: NF9754_low_14
Description: NF9754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9754_low_14
NF9754_low_14
[»] chr2 (10 HSPs)
chr2 (52-132)||(18056227-18056307)
chr2 (142-211)||(18056334-18056403)
chr2 (1-45)||(18056146-18056190)
chr2 (148-211)||(14955687-14955750)
chr2 (148-211)||(4904024-4904087)
chr2 (148-211)||(37416868-37416931)
chr2 (84-118)||(39569872-39569906)
chr2 (148-201)||(39284422-39284475)
chr2 (66-114)||(7677663-7677710)
chr2 (66-106)||(14955811-14955850)
[»] chr1 (3 HSPs)
chr1 (148-211)||(15431544-15431607)
chr1 (144-216)||(28053591-28053663)
chr1 (84-114)||(47025680-47025710)
[»] chr8 (1 HSPs)
chr8 (142-211)||(27110335-27110404)
[»] chr5 (2 HSPs)
chr5 (144-211)||(8514526-8514593)
chr5 (148-211)||(41630649-41630712)
[»] chr6 (1 HSPs)
chr6 (66-123)||(29319666-29319722)
[»] chr4 (2 HSPs)
chr4 (146-211)||(37465650-37465715)
chr4 (175-211)||(4821083-4821119)


Alignment Details
Target: chr2 (Bit Score: 77; Significance: 7e-36; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 52 - 132
Target Start/End: Original strand, 18056227 - 18056307
Alignment:
Q  52 gtggctgatcttggttgacaaaaacaaaattgatattcatttatttaaattgataaagtatataatatacaacacatattc 132  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18056227 gtggctgatcttggttgacaaaaataaaattgatattcatttatttaaattgataaagtatataatatacaacacatattc 18056307  T

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Target: chr2; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 142 - 211
Target Start/End: Original strand, 18056334 - 18056403
Alignment:
Q  142 tatgcaaacaaactcataacatctaagtcaacaacatacaaggataaaatgtttacaaataatatgataa 211  Q
    |||||||||||||||||||||||||||| |||||||||||| || |||||  ||||||||||||||||||    
T  18056334 tatgcaaacaaactcataacatctaagttaacaacatacaatgacaaaatacttacaaataatatgataa 18056403  T

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Target: chr2; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 18056146 - 18056190
Alignment:
Q  1 tcttcactttttcaactttacaaataaattcttgaatccaaaaat 45  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  18056146 tcttcactttttcaactttacaaataaattcttgaatccaaaaat 18056190  T

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Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 148 - 211
Target Start/End: Complemental strand, 14955750 - 14955687
Alignment:
Q  148 aacaaactcataacatctaagtcaacaacatacaaggataaaatgtttacaaataatatgataa 211  Q
    |||||||||| |||| |||||| || ||||||||| |||||||||| |||||||||||||||||    
T  14955750 aacaaactcacaacacctaagttaataacatacaatgataaaatgtctacaaataatatgataa 14955687  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 148 - 211
Target Start/End: Original strand, 4904024 - 4904087
Alignment:
Q  148 aacaaactcataacatctaagtcaacaacatacaaggataaaatgtttacaaataatatgataa 211  Q
    |||||||||| |||||| |||| || | ||||||| || ||||||| |||||||||||||||||    
T  4904024 aacaaactcacaacatccaagttaatagcatacaacgacaaaatgtctacaaataatatgataa 4904087  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 148 - 211
Target Start/End: Complemental strand, 37416931 - 37416868
Alignment:
Q  148 aacaaactcataacatctaagtcaacaacatacaaggataaaatgtttacaaataatatgataa 211  Q
    |||||||| |||||| | |||| |||||||||||| |  ||||||| |||||||||||||||||    
T  37416931 aacaaacttataacacccaagttaacaacatacaacggcaaaatgtctacaaataatatgataa 37416868  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 118
Target Start/End: Original strand, 39569872 - 39569906
Alignment:
Q  84 atattcatttatttaaattgataaagtatataata 118  Q
    ||||||||||||||||||||||| |||||||||||    
T  39569872 atattcatttatttaaattgatagagtatataata 39569906  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 148 - 201
Target Start/End: Original strand, 39284422 - 39284475
Alignment:
Q  148 aacaaactcataacatctaagtcaacaacatacaaggataaaatgtttacaaat 201  Q
    ||||||||||||| ||  |||| |||||||||||| |||||||||| |||||||    
T  39284422 aacaaactcataatattcaagttaacaacatacaacgataaaatgtctacaaat 39284475  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 114
Target Start/End: Original strand, 7677663 - 7677710
Alignment:
Q  66 ttgacaaaaacaaaattgatattcatttatttaaattgataaagtatat 114  Q
    |||||||||||||||  ||||||||||| |||||||||||| |||||||    
T  7677663 ttgacaaaaacaaaac-gatattcatttttttaaattgatagagtatat 7677710  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 106
Target Start/End: Complemental strand, 14955850 - 14955811
Alignment:
Q  66 ttgacaaaaacaaaattgatattcatttatttaaattgata 106  Q
    |||||||||||||||| |||||||||| |||||||||||||    
T  14955850 ttgacaaaaacaaaat-gatattcattcatttaaattgata 14955811  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 148 - 211
Target Start/End: Original strand, 15431544 - 15431607
Alignment:
Q  148 aacaaactcataacatctaagtcaacaacatacaaggataaaatgtttacaaataatatgataa 211  Q
    |||||||||| |||||| |||| || | ||||||| |||||||||| |||||||||||||||||    
T  15431544 aacaaactcacaacatccaagtgaatagcatacaacgataaaatgtctacaaataatatgataa 15431607  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 216
Target Start/End: Original strand, 28053591 - 28053663
Alignment:
Q  144 tgcaaacaaactcataacatctaagtcaacaacatacaaggataaaatgtttacaaataatatgataagatca 216  Q
    |||||| |||||||||||||| |||| || | |||||||  ||||||||  ||||||||||||||||| ||||    
T  28053591 tgcaaataaactcataacatccaagtaaagatcatacaacaataaaatgcctacaaataatatgataaaatca 28053663  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 114
Target Start/End: Complemental strand, 47025710 - 47025680
Alignment:
Q  84 atattcatttatttaaattgataaagtatat 114  Q
    |||||||||||||||||||||||||||||||    
T  47025710 atattcatttatttaaattgataaagtatat 47025680  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 211
Target Start/End: Original strand, 27110335 - 27110404
Alignment:
Q  142 tatgcaaacaaactcataacatctaagtcaacaacatacaaggataaaatgtttacaaataatatgataa 211  Q
    ||||| |||||||||| |||| | |||| || | ||||||| |||||||||| |||||||||||||||||    
T  27110335 tatgcgaacaaactcacaacacccaagttaatagcatacaacgataaaatgtctacaaataatatgataa 27110404  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 211
Target Start/End: Original strand, 8514526 - 8514593
Alignment:
Q  144 tgcaaacaaactcataacatctaagtcaacaacatacaaggataaaatgtttacaaataatatgataa 211  Q
    |||||||||| | |||| ||| |||| || ||||||||| || ||||| |||||||||||||||||||    
T  8514526 tgcaaacaaattaataaaatcaaagttaataacatacaacgacaaaatatttacaaataatatgataa 8514593  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 148 - 211
Target Start/End: Complemental strand, 41630712 - 41630649
Alignment:
Q  148 aacaaactcataacatctaagtcaacaacatacaaggataaaatgtttacaaataatatgataa 211  Q
    |||||||||| |||| |||||| || | ||||||| || ||||||| |||||||||||||||||    
T  41630712 aacaaactcacaacacctaagttaatagcatacaacgacaaaatgtctacaaataatatgataa 41630649  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 66 - 123
Target Start/End: Original strand, 29319666 - 29319722
Alignment:
Q  66 ttgacaaaaacaaaattgatattcatttatttaaattgataaagtatataatatacaa 123  Q
    |||||||||||||||| |||||||||| ||| ||||| ||||||||||| | ||||||    
T  29319666 ttgacaaaaacaaaat-gatattcattcattcaaattaataaagtatatcagatacaa 29319722  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 146 - 211
Target Start/End: Complemental strand, 37465715 - 37465650
Alignment:
Q  146 caaacaaactcataacatctaagtcaacaacatacaaggataaaatgtttacaaataatatgataa 211  Q
    |||||||||||| |||| | |||| || | ||||||| || |||||| ||||||||||||||||||    
T  37465715 caaacaaactcacaacacccaagttaatagcatacaacgacaaaatgcttacaaataatatgataa 37465650  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 211
Target Start/End: Complemental strand, 4821119 - 4821083
Alignment:
Q  175 acatacaaggataaaatgtttacaaataatatgataa 211  Q
    |||||||| |||||||||| |||||||||||||||||    
T  4821119 acatacaacgataaaatgtctacaaataatatgataa 4821083  T

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