View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9754_low_3 (Length: 299)
Name: NF9754_low_3
Description: NF9754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9754_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 19 - 291
Target Start/End: Original strand, 43371744 - 43372016
Alignment:
| Q |
19 |
gttaacatctttagacggctttttattgcgctctaatagttgcgcaacagttttccagccaccagttgcttttttctcatttgatgattgaggaacactt |
118 |
Q |
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| T |
43371744 |
gttaacatctttaaacggctttttattgcgctctaatagttgcgcaacagttttccagccaccagttgcttttttctcatttgatgattgaggaacactt |
43371843 |
T |
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| Q |
119 |
tttgttttgtgaattactgtgttgctgtcaaattttaggatatatgcttgattgcatccttcatgaagcctctcccccaatgtgtcaatgatgtagtaac |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43371844 |
tttgttttgtgaattactgtgttgctgtcaaattttaggatatatgcttgattgcatccttcatgaagcctctcccccaatgtgtcaatgatgtagtaac |
43371943 |
T |
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| Q |
219 |
agtcagattcaactttgagaatgaaaaaatggtcattccaactaacaatgaaaacatgagctccacctttgct |
291 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |
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| T |
43371944 |
agtcagattcaactttgagaatgaaaaaatggtcattccaactaacaatgaaaacatgaggtccaccattgct |
43372016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 123 - 261
Target Start/End: Original strand, 24585737 - 24585875
Alignment:
| Q |
123 |
ttttgtgaattactgtgttgctgtcaaattttaggatatatgcttgattgcatccttcatgaagcctctcccccaatgtgtcaatgatgtagtaacagtc |
222 |
Q |
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|||||| |||||| ||||||||||| ||||| | |||||||||||||||||||||||| | ||||||||| || | || || |||||| | ||| | || |
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| T |
24585737 |
ttttgtaaattaccgtgttgctgtcgaatttcaagatatatgcttgattgcatccttcgtaaagcctctctccgagagtatcgatgatgcaataagaatc |
24585836 |
T |
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| Q |
223 |
agattcaactttgagaatgaaaaaatggtcattccaact |
261 |
Q |
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| T |
24585837 |
ggcctcaactttgaggatgaagaaatggtcattccaact |
24585875 |
T |
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