View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9754_low_6 (Length: 255)

Name: NF9754_low_6
Description: NF9754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9754_low_6
NF9754_low_6
[»] chr3 (28 HSPs)
chr3 (1-126)||(46029718-46029844)
chr3 (171-241)||(8067888-8067958)
chr3 (165-219)||(55273619-55273674)
chr3 (171-219)||(51166555-51166603)
chr3 (172-219)||(2446641-2446688)
chr3 (165-219)||(10660298-10660353)
chr3 (171-216)||(33584041-33584086)
chr3 (172-216)||(5272875-5272919)
chr3 (165-216)||(20607035-20607087)
chr3 (171-219)||(23151565-23151613)
chr3 (165-216)||(27450112-27450164)
chr3 (171-219)||(44378710-44378758)
chr3 (172-216)||(46529228-46529272)
chr3 (171-219)||(51755090-51755138)
chr3 (176-219)||(3020010-3020053)
chr3 (172-219)||(8827702-8827749)
chr3 (165-219)||(43972219-43972274)
chr3 (174-216)||(26974901-26974943)
chr3 (174-220)||(37821763-37821809)
chr3 (171-216)||(1545368-1545413)
chr3 (171-220)||(41457502-41457551)
chr3 (176-216)||(24406508-24406548)
chr3 (176-216)||(37125951-37125991)
chr3 (171-219)||(38253257-38253305)
chr3 (174-216)||(24349937-24349979)
chr3 (183-219)||(8066256-8066292)
chr3 (174-219)||(10470740-10470785)
chr3 (172-216)||(35923362-35923406)
[»] chr1 (24 HSPs)
chr1 (171-233)||(48541941-48542003)
chr1 (165-219)||(46233645-46233699)
chr1 (176-234)||(44053991-44054049)
chr1 (171-219)||(15475319-15475367)
chr1 (171-219)||(49457526-49457574)
chr1 (165-219)||(8896248-8896303)
chr1 (172-219)||(15910411-15910458)
chr1 (171-216)||(29033161-29033206)
chr1 (171-220)||(49740607-49740656)
chr1 (171-216)||(50501424-50501469)
chr1 (171-219)||(3047541-3047589)
chr1 (171-241)||(17925030-17925103)
chr1 (171-220)||(18605942-18605991)
chr1 (174-219)||(37093248-37093293)
chr1 (174-219)||(43106146-43106191)
chr1 (174-216)||(11335086-11335128)
chr1 (174-216)||(11493106-11493148)
chr1 (173-219)||(28068327-28068373)
chr1 (174-216)||(52468932-52468974)
chr1 (171-216)||(3994435-3994480)
chr1 (171-216)||(6979415-6979460)
chr1 (165-219)||(3771243-3771298)
chr1 (165-219)||(28225583-28225638)
chr1 (178-216)||(42885597-42885635)
[»] chr2 (9 HSPs)
chr2 (172-241)||(39429267-39429336)
chr2 (171-219)||(2358076-2358124)
chr2 (171-219)||(26479123-26479171)
chr2 (171-219)||(31546630-31546678)
chr2 (174-219)||(1221760-1221805)
chr2 (172-216)||(2371433-2371477)
chr2 (173-216)||(30786641-30786684)
chr2 (173-219)||(21866552-21866598)
chr2 (171-216)||(14286648-14286693)
[»] chr5 (15 HSPs)
chr5 (172-220)||(11255331-11255379)
chr5 (173-219)||(10691357-10691403)
chr5 (173-219)||(31377569-31377615)
chr5 (171-216)||(6230986-6231031)
chr5 (174-219)||(8835874-8835919)
chr5 (165-216)||(25032046-25032098)
chr5 (171-219)||(29296918-29296966)
chr5 (178-241)||(33569351-33569417)
chr5 (165-219)||(18618137-18618192)
chr5 (172-219)||(33591312-33591359)
chr5 (180-236)||(8781541-8781600)
chr5 (171-219)||(8336132-8336180)
chr5 (174-216)||(41742822-41742864)
chr5 (174-219)||(15471999-15472044)
chr5 (165-219)||(42674858-42674913)
[»] scaffold0041 (1 HSPs)
scaffold0041 (171-219)||(104915-104963)
[»] chr8 (15 HSPs)
chr8 (171-219)||(32834887-32834935)
chr8 (165-219)||(29998381-29998436)
chr8 (171-216)||(35392870-35392915)
chr8 (174-219)||(36782268-36782313)
chr8 (172-216)||(20188250-20188294)
chr8 (172-216)||(20207319-20207363)
chr8 (165-216)||(30699353-30699405)
chr8 (173-220)||(1103894-1103941)
chr8 (165-219)||(12987471-12987526)
chr8 (165-219)||(24757290-24757345)
chr8 (172-219)||(31097975-31098022)
chr8 (165-216)||(482451-482503)
chr8 (176-219)||(30656580-30656623)
chr8 (186-241)||(5459235-5459293)
chr8 (182-214)||(27225605-27225637)
[»] chr7 (16 HSPs)
chr7 (171-219)||(38742517-38742565)
chr7 (171-219)||(41118029-41118077)
chr7 (165-219)||(44509497-44509552)
chr7 (173-219)||(47455754-47455800)
chr7 (171-216)||(5543612-5543657)
chr7 (171-216)||(31622660-31622705)
chr7 (171-219)||(25105888-25105936)
chr7 (172-216)||(44291831-44291875)
chr7 (171-219)||(47019898-47019946)
chr7 (165-241)||(3111203-3111282)
chr7 (175-219)||(9740584-9740628)
chr7 (165-216)||(12849062-12849114)
chr7 (171-219)||(31587155-31587203)
chr7 (172-216)||(40186015-40186059)
chr7 (172-219)||(27902766-27902811)
chr7 (171-220)||(38167537-38167586)
[»] chr6 (6 HSPs)
chr6 (171-219)||(18676068-18676116)
chr6 (165-219)||(742225-742280)
chr6 (172-219)||(33490375-33490422)
chr6 (171-216)||(8063568-8063613)
chr6 (173-216)||(28913540-28913583)
chr6 (171-219)||(10791116-10791163)
[»] chr4 (17 HSPs)
chr4 (165-220)||(7553509-7553565)
chr4 (171-241)||(11309956-11310029)
chr4 (173-219)||(39677113-39677159)
chr4 (171-216)||(36224480-36224525)
chr4 (171-216)||(50622393-50622438)
chr4 (171-219)||(55281665-55281713)
chr4 (173-219)||(45885711-45885757)
chr4 (171-216)||(3874928-3874973)
chr4 (174-219)||(7326942-7326987)
chr4 (171-219)||(33115453-33115501)
chr4 (176-220)||(44878983-44879027)
chr4 (172-211)||(3931006-3931045)
chr4 (178-220)||(11379934-11379976)
chr4 (174-216)||(36431765-36431807)
chr4 (171-216)||(28867050-28867095)
chr4 (171-216)||(29924272-29924317)
chr4 (172-211)||(24744407-24744446)
[»] scaffold0548 (1 HSPs)
scaffold0548 (171-241)||(8373-8446)
[»] scaffold0057 (1 HSPs)
scaffold0057 (165-216)||(42049-42101)
[»] scaffold0562 (1 HSPs)
scaffold0562 (171-216)||(5747-5792)
[»] scaffold0081 (1 HSPs)
scaffold0081 (171-220)||(12199-12248)
[»] scaffold1360 (1 HSPs)
scaffold1360 (172-211)||(386-425)


Alignment Details
Target: chr3 (Bit Score: 99; Significance: 6e-49; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 46029718 - 46029844
Alignment:
Q  1 ttcgaaaattgttagaacaaacacattattgatagggatttaaacattaacccatccatt-atatgtgcaagttttaaagattattcgtgactttattta 99  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||| ||||||||| |||||||||||||||||||||    
T  46029718 ttcgaaaattgttagaacaaacacattattgatagggattcaaacattaacccatctatttatatgtgtaagttttaatgattattcgtgactttattta 46029817  T
Q  100 tttatcgaaaaaacacactcttttcaa 126  Q
    ||||| |||||||||||||||||||||    
T  46029818 tttatagaaaaaacacactcttttcaa 46029844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 171 - 241
Target Start/End: Original strand, 8067888 - 8067958
Alignment:
Q  171 cccagaatgactaatataccttttaactaaaataaaaatttcaaattaataaatcatttcatccattgctt 241  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  8067888 cccagaatgactaatataccctttaactaaaataaaaatttcaaattaataaatcatttcatccatcgctt 8067958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 165 - 219
Target Start/End: Original strand, 55273619 - 55273674
Alignment:
Q  165 gttacacc-cagaatgactaatataccttttaactaaaataaaaatttcaaattaa 219  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  55273619 gttacacctcagaatgactaatataccttttaactaaaataaaaatttcaaattaa 55273674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 171 - 219
Target Start/End: Original strand, 51166555 - 51166603
Alignment:
Q  171 cccagaatgactaatataccttttaactaaaataaaaatttcaaattaa 219  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  51166555 cccagaatgactaatataccctttaactaaaataaaaatttcaaattaa 51166603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 172 - 219
Target Start/End: Complemental strand, 2446688 - 2446641
Alignment:
Q  172 ccagaatgactaatataccttttaactaaaataaaaatttcaaattaa 219  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  2446688 ccagaatgactaatataccctttaactaaaataaaaatttcaaattaa 2446641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 165 - 219
Target Start/End: Complemental strand, 10660353 - 10660298
Alignment:
Q  165 gttacaccc-agaatgactaatataccttttaactaaaataaaaatttcaaattaa 219  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||    
T  10660353 gttacaccctagaatgactaatataccctttaactaaaataaaaatttcaaattaa 10660298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 171 - 216
Target Start/End: Complemental strand, 33584086 - 33584041
Alignment:
Q  171 cccagaatgactaatataccttttaactaaaataaaaatttcaaat 216  Q
    |||||||||||||||||||| |||||||||||||||||||||||||    
T  33584086 cccagaatgactaatataccctttaactaaaataaaaatttcaaat 33584041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 172 - 216
Target Start/End: Original strand, 5272875 - 5272919
Alignment:
Q  172 ccagaatgactaatataccttttaactaaaataaaaatttcaaat 216  Q
    ||||||||||||||||||| |||||||||||||||||||||||||    
T  5272875 ccagaatgactaatataccctttaactaaaataaaaatttcaaat 5272919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 165 - 216
Target Start/End: Original strand, 20607035 - 20607087
Alignment:
Q  165 gttacaccc-agaatgactaatataccttttaactaaaataaaaatttcaaat 216  Q
    ||||||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  20607035 gttacacccgagaatgactaatataccctttaactaaaataaaaatttcaaat 20607087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 23151613 - 23151565
Alignment:
Q  171 cccagaatgactaatataccttttaactaaaataaaaatttcaaattaa 219  Q
    |||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  23151613 cccagaatgactaatataccctttaattaaaataaaaatttcaaattaa 23151565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 165 - 216
Target Start/End: Complemental strand, 27450164 - 27450112
Alignment:
Q  165 gttacaccc-agaatgactaatataccttttaactaaaataaaaatttcaaat 216  Q
    ||||||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  27450164 gttacaccctagaatgactaatataccctttaactaaaataaaaatttcaaat 27450112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 44378758 - 44378710
Alignment:
Q  171 cccagaatgactaatataccttttaactaaaataaaaatttcaaattaa 219  Q
    |||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  44378758 cccagaatgattaatataccctttaactaaaataaaaatttcaaattaa 44378710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 172 - 216
Target Start/End: Complemental strand, 46529272 - 46529228
Alignment:
Q  172 ccagaatgactaatataccttttaactaaaataaaaatttcaaat 216  Q
    ||||||||||||||||||| |||||||||||||||||||||||||    
T  46529272 ccagaatgactaatataccctttaactaaaataaaaatttcaaat 46529228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 51755138 - 51755090
Alignment:
Q  171 cccagaatgactaatataccttttaactaaaataaaaatttcaaattaa 219  Q
    |||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  51755138 cccagaatgattaatataccctttaactaaaataaaaatttcaaattaa 51755090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 176 - 219
Target Start/End: Complemental strand, 3020053 - 3020010
Alignment:
Q  176 aatgactaatataccttttaactaaaataaaaatttcaaattaa 219  Q
    ||||||||||||||| ||||||||||||||||||||||||||||    
T  3020053 aatgactaatataccctttaactaaaataaaaatttcaaattaa 3020010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 172 - 219
Target Start/End: Original strand, 8827702 - 8827749
Alignment:
Q  172 ccagaatgactaatataccttttaactaaaataaaaatttcaaattaa 219  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  8827702 ccagaatgactaatataccctttaattaaaataaaaatttcaaattaa 8827749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 165 - 219
Target Start/End: Original strand, 43972219 - 43972274
Alignment:
Q  165 gttacacc-cagaatgactaatataccttttaactaaaataaaaatttcaaattaa 219  Q
    |||||||| |||||||||||||||||| ||||||||| ||||||||||||||||||    
T  43972219 gttacacctcagaatgactaatataccatttaactaagataaaaatttcaaattaa 43972274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 174 - 216
Target Start/End: Original strand, 26974901 - 26974943
Alignment:
Q  174 agaatgactaatataccttttaactaaaataaaaatttcaaat 216  Q
    ||||||||||||||| |||||||||||||||||||||||||||    
T  26974901 agaatgactaatatatcttttaactaaaataaaaatttcaaat 26974943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 174 - 220
Target Start/End: Complemental strand, 37821809 - 37821763
Alignment:
Q  174 agaatgactaatataccttttaactaaaataaaaatttcaaattaat 220  Q
    ||||||||||||||||| |||||||||||||||||||| ||||||||    
T  37821809 agaatgactaatataccctttaactaaaataaaaattttaaattaat 37821763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 171 - 216
Target Start/End: Original strand, 1545368 - 1545413
Alignment:
Q  171 cccagaatgactaatataccttttaactaaaataaaaatttcaaat 216  Q
    |||||||||||||||||||| |||||||||||||||| ||||||||    
T  1545368 cccagaatgactaatataccctttaactaaaataaaattttcaaat 1545413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 171 - 220
Target Start/End: Complemental strand, 41457551 - 41457502
Alignment:
Q  171 cccagaatgactaatataccttttaactaaaataaaaatttcaaattaat 220  Q
    |||| ||||||||||||| | |||||||||||||||||||||||||||||    
T  41457551 cccataatgactaatatatcctttaactaaaataaaaatttcaaattaat 41457502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 176 - 216
Target Start/End: Complemental strand, 24406548 - 24406508
Alignment:
Q  176 aatgactaatataccttttaactaaaataaaaatttcaaat 216  Q
    ||||||||||||||| |||||||||||||||||||||||||    
T  24406548 aatgactaatataccatttaactaaaataaaaatttcaaat 24406508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 176 - 216
Target Start/End: Original strand, 37125951 - 37125991
Alignment:
Q  176 aatgactaatataccttttaactaaaataaaaatttcaaat 216  Q
    ||||||||||||||| |||||||||||||||||||||||||    
T  37125951 aatgactaatataccctttaactaaaataaaaatttcaaat 37125991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 38253305 - 38253257
Alignment:
Q  171 cccagaatgactaatataccttttaactaaaataaaaatttcaaattaa 219  Q
    |||| ||||||||||||||| ||||| ||||||||||||||||||||||    
T  38253305 cccaaaatgactaatataccctttaaataaaataaaaatttcaaattaa 38253257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 174 - 216
Target Start/End: Complemental strand, 24349979 - 24349937
Alignment:
Q  174 agaatgactaatataccttttaactaaaataaaaatttcaaat 216  Q
    ||||||| ||||||||| |||||||||||||||||||||||||    
T  24349979 agaatgattaatataccctttaactaaaataaaaatttcaaat 24349937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 219
Target Start/End: Complemental strand, 8066292 - 8066256
Alignment:
Q  183 aatataccttttaactaaaataaaaatttcaaattaa 219  Q
    |||||||| ||||||||||||||||||||||||||||    
T  8066292 aatataccctttaactaaaataaaaatttcaaattaa 8066256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 174 - 219
Target Start/End: Original strand, 10470740 - 10470785
Alignment:
Q  174 agaatgactaatataccttttaactaaaataaaaatttcaaattaa 219  Q
    ||||||| ||||||| |||| ||||||||||||||||| |||||||    
T  10470740 agaatgattaatatatctttgaactaaaataaaaattttaaattaa 10470785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 216
Target Start/End: Complemental strand, 35923406 - 35923362
Alignment:
Q  172 ccagaatgactaatataccttttaactaaaataaaaatttcaaat 216  Q
    |||||||||  |||||||| ||||| |||||||||||||||||||    
T  35923406 ccagaatgatcaatataccctttaattaaaataaaaatttcaaat 35923362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 4e-25; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 171 - 233
Target Start/End: Original strand, 48541941 - 48542003
Alignment:
Q  171 cccagaatgactaatataccttttaactaaaataaaaatttcaaattaataaatcatttcatc 233  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  48541941 cccagaatgactaatataccctttaactaaaataaaaatttcaaattaataaatcatttcatc 48542003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 165 - 219
Target Start/End: Original strand, 46233645 - 46233699
Alignment:
Q  165 gttacacccagaatgactaatataccttttaactaaaataaaaatttcaaattaa 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46233645 gttacacccagaatgactaatataccttttaactaaaataaaaatttcaaattaa 46233699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 176 - 234
Target Start/End: Original strand, 44053991 - 44054049
Alignment:
Q  176 aatgactaatataccttttaactaaaataaaaatttcaaattaataaatcatttcatcc 234  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  44053991 aatgactaatataccctttaattaaaataaaaatttcaaattaataaatcatttcatcc 44054049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 171 - 219
Target Start/End: Original strand, 15475319 - 15475367
Alignment:
Q  171 cccagaatgactaatataccttttaactaaaataaaaatttcaaattaa 219  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  15475319 cccagaatgactaatataccctttaactaaaataaaaatttcaaattaa 15475367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 49457574 - 49457526
Alignment:
Q  171 cccagaatgactaatataccttttaactaaaataaaaatttcaaattaa 219  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  49457574 cccagaatgactaatataccctttaactaaaataaaaatttcaaattaa 49457526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 165 - 219
Target Start/End: Complemental strand, 8896303 - 8896248
Alignment:
Q  165 gttacacc-cagaatgactaatataccttttaactaaaataaaaatttcaaattaa 219  Q
    |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||    
T  8896303 gttacacctcagaatgactaatataccctttaactaaaataaaaatttcaaattaa 8896248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 172 - 219
Target Start/End: Complemental strand, 15910458 - 15910411
Alignment:
Q  172 ccagaatgactaatataccttttaactaaaataaaaatttcaaattaa 219  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  15910458 ccagaatgactaatataccctttaactaaaataaaaatttcaaattaa 15910411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 171 - 216
Target Start/End: Original strand, 29033161 - 29033206
Alignment:
Q  171 cccagaatgactaatataccttttaactaaaataaaaatttcaaat 216  Q
    |||||||||||||||||||| |||||||||||||||||||||||||    
T  29033161 cccagaatgactaatataccctttaactaaaataaaaatttcaaat 29033206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 171 - 220
Target Start/End: Complemental strand, 49740656 - 49740607
Alignment:
Q  171 cccagaatgactaatataccttttaactaaaataaaaatttcaaattaat 220  Q
    |||||| ||||||||||||| |||||||||||||||||||||||||||||    
T  49740656 cccagactgactaatataccctttaactaaaataaaaatttcaaattaat 49740607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 171 - 216
Target Start/End: Complemental strand, 50501469 - 50501424
Alignment:
Q  171 cccagaatgactaatataccttttaactaaaataaaaatttcaaat 216  Q
    |||||||||||||||||||| |||||||||||||||||||||||||    
T  50501469 cccagaatgactaatataccctttaactaaaataaaaatttcaaat 50501424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 3047589 - 3047541
Alignment:
Q  171 cccagaatgactaatataccttttaactaaaataaaaatttcaaattaa 219  Q
    |||||||||||||||||||| |||||||||||||||||||| |||||||    
T  3047589 cccagaatgactaatataccctttaactaaaataaaaatttaaaattaa 3047541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 171 - 241
Target Start/End: Original strand, 17925030 - 17925103
Alignment:
Q  171 cccagaatgactaatataccttttaactaaaataaaaatttcaaattaat---aaatcatttcatccattgctt 241  Q
    |||||| ||||||||||||| |||||||||||||||||||| ||||||||   ||||| |||||||||| ||||    
T  17925030 cccagattgactaatataccctttaactaaaataaaaattttaaattaatctaaaatcctttcatccatcgctt 17925103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 171 - 220
Target Start/End: Complemental strand, 18605991 - 18605942
Alignment:
Q  171 cccagaatgactaatataccttttaactaaaataaaaatttcaaattaat 220  Q
    |||| ||||||||||||||| || ||||||||||||||||||||||||||    
T  18605991 cccataatgactaatatacccttgaactaaaataaaaatttcaaattaat 18605942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 174 - 219
Target Start/End: Original strand, 37093248 - 37093293
Alignment:
Q  174 agaatgactaatataccttttaactaaaataaaaatttcaaattaa 219  Q
    ||||||||||||||||| |||||||||||||||||||| |||||||    
T  37093248 agaatgactaatataccctttaactaaaataaaaattttaaattaa 37093293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 174 - 219
Target Start/End: Original strand, 43106146 - 43106191
Alignment:
Q  174 agaatgactaatataccttttaactaaaataaaaatttcaaattaa 219  Q
    ||||||||||||||| ||||||| ||||||||||||||||||||||    
T  43106146 agaatgactaatatatcttttaattaaaataaaaatttcaaattaa 43106191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 174 - 216
Target Start/End: Original strand, 11335086 - 11335128
Alignment:
Q  174 agaatgactaatataccttttaactaaaataaaaatttcaaat 216  Q
    ||||||||||||||| | |||||||||||||||||||||||||    
T  11335086 agaatgactaatatatcctttaactaaaataaaaatttcaaat 11335128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 174 - 216
Target Start/End: Original strand, 11493106 - 11493148
Alignment:
Q  174 agaatgactaatataccttttaactaaaataaaaatttcaaat 216  Q
    ||||||||||||||| | |||||||||||||||||||||||||    
T  11493106 agaatgactaatatatcctttaactaaaataaaaatttcaaat 11493148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 173 - 219
Target Start/End: Original strand, 28068327 - 28068373
Alignment:
Q  173 cagaatgactaatataccttttaactaaaataaaaatttcaaattaa 219  Q
    |||||||||||||||||| ||||| |||||| |||||||||||||||    
T  28068327 cagaatgactaatataccctttaattaaaattaaaatttcaaattaa 28068373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 174 - 216
Target Start/End: Original strand, 52468932 - 52468974
Alignment:
Q  174 agaatgactaatataccttttaactaaaataaaaatttcaaat 216  Q
    ||||||| ||||||||| |||||||||||||||||||||||||    
T  52468932 agaatgattaatataccctttaactaaaataaaaatttcaaat 52468974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 171 - 216
Target Start/End: Original strand, 3994435 - 3994480
Alignment:
Q  171 cccagaatgactaatataccttttaactaaaataaaaatttcaaat 216  Q
    |||||||||||||||||||| ||||| |||||||||||||| ||||    
T  3994435 cccagaatgactaatataccctttaattaaaataaaaattttaaat 3994480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 171 - 216
Target Start/End: Complemental strand, 6979460 - 6979415
Alignment:
Q  171 cccagaatgactaatataccttttaactaaaataaaaatttcaaat 216  Q
    |||| ||||||||||||||| |||||||||||||||||||| ||||    
T  6979460 cccaaaatgactaatataccctttaactaaaataaaaatttaaaat 6979415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 165 - 219
Target Start/End: Complemental strand, 3771298 - 3771243
Alignment:
Q  165 gttacaccc-agaatgactaatataccttttaactaaaataaaaatttcaaattaa 219  Q
    ||||||||| |||||| |||||||| | ||||||||||||| ||||||||||||||    
T  3771298 gttacaccctagaatggctaatatatcctttaactaaaatagaaatttcaaattaa 3771243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 165 - 219
Target Start/End: Original strand, 28225583 - 28225638
Alignment:
Q  165 gttacaccc-agaatgactaatataccttttaactaaaataaaaatttcaaattaa 219  Q
    ||||||||| ||||||||||||||| | ||||| |||||||||||||| |||||||    
T  28225583 gttacaccctagaatgactaatatatcctttaattaaaataaaaattttaaattaa 28225638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 216
Target Start/End: Complemental strand, 42885635 - 42885597
Alignment:
Q  178 tgactaatataccttttaactaaaataaaaatttcaaat 216  Q
    ||||||||||||  |||||||||||||||||||||||||    
T  42885635 tgactaatatactctttaactaaaataaaaatttcaaat 42885597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 172 - 241
Target Start/End: Original strand, 39429267 - 39429336
Alignment:
Q  172 ccagaatgactaatataccttttaactaaaataaaaatttcaaattaataaatcatttcatccattgctt 241  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||| ||||    
T  39429267 ccagaatgactaatataccctttaattaaaataaaaatttcaaattaataaatcatttcattcatcgctt 39429336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 2358124 - 2358076
Alignment:
Q  171 cccagaatgactaatataccttttaactaaaataaaaatttcaaattaa 219  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  2358124 cccagaatgactaatataccctttaactaaaataaaaatttcaaattaa 2358076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 171 - 219
Target Start/End: Original strand, 26479123 - 26479171
Alignment:
Q  171 cccagaatgactaatataccttttaactaaaataaaaatttcaaattaa 219  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  26479123 cccagaatgactaatataccctttaactaaaataaaaatttcaaattaa 26479171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 171 - 219
Target Start/End: Original strand, 31546630 - 31546678
Alignment:
Q  171 cccagaatgactaatataccttttaactaaaataaaaatttcaaattaa 219  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  31546630 cccagaatgactaatataccctttaactaaaataaaaatttcaaattaa 31546678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 174 - 219
Target Start/End: Original strand, 1221760 - 1221805
Alignment:
Q  174 agaatgactaatataccttttaactaaaataaaaatttcaaattaa 219  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||    
T  1221760 agaatgactaatataccctttaactaaaataaaaatttcaaattaa 1221805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 172 - 216
Target Start/End: Original strand, 2371433 - 2371477
Alignment:
Q  172 ccagaatgactaatataccttttaactaaaataaaaatttcaaat 216  Q
    ||||||||||||||||||| |||||||||||||||||||||||||    
T  2371433 ccagaatgactaatataccctttaactaaaataaaaatttcaaat 2371477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 173 - 216
Target Start/End: Original strand, 30786641 - 30786684
Alignment:
Q  173 cagaatgactaatataccttttaactaaaataaaaatttcaaat 216  Q
    |||||||||||||||||| |||||||||||||||||||||||||    
T  30786641 cagaatgactaatataccctttaactaaaataaaaatttcaaat 30786684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 173 - 219
Target Start/End: Original strand, 21866552 - 21866598
Alignment:
Q  173 cagaatgactaatataccttttaactaaaataaaaatttcaaattaa 219  Q
    |||||||||||||||||| |||||||||||||||||||| |||||||    
T  21866552 cagaatgactaatataccctttaactaaaataaaaattttaaattaa 21866598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 171 - 216
Target Start/End: Original strand, 14286648 - 14286693
Alignment:
Q  171 cccagaatgactaatataccttttaactaaaataaaaatttcaaat 216  Q
    |||||||||||||||||||| ||||| |||||||||||||||||||    
T  14286648 cccagaatgactaatataccctttaattaaaataaaaatttcaaat 14286693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 172 - 220
Target Start/End: Complemental strand, 11255379 - 11255331
Alignment:
Q  172 ccagaatgactaatataccttttaactaaaataaaaatttcaaattaat 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  11255379 ccagaatgactaatataccttttaactaaaataaaaatttcaaattaat 11255331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 173 - 219
Target Start/End: Original strand, 10691357 - 10691403
Alignment:
Q  173 cagaatgactaatataccttttaactaaaataaaaatttcaaattaa 219  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||    
T  10691357 cagaatgactaatataccctttaactaaaataaaaatttcaaattaa 10691403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 173 - 219
Target Start/End: Original strand, 31377569 - 31377615
Alignment:
Q  173 cagaatgactaatataccttttaactaaaataaaaatttcaaattaa 219  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||    
T  31377569 cagaatgactaatataccctttaactaaaataaaaatttcaaattaa 31377615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 171 - 216
Target Start/End: Complemental strand, 6231031 - 6230986
Alignment:
Q  171 cccagaatgactaatataccttttaactaaaataaaaatttcaaat 216  Q
    |||||||||||||||||||| |||||||||||||||||||||||||    
T  6231031 cccagaatgactaatataccctttaactaaaataaaaatttcaaat 6230986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 174 - 219
Target Start/End: Original strand, 8835874 - 8835919
Alignment:
Q  174 agaatgactaatataccttttaactaaaataaaaatttcaaattaa 219  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||    
T  8835874 agaatgactaatataccctttaactaaaataaaaatttcaaattaa 8835919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 165 - 216
Target Start/End: Complemental strand, 25032098 - 25032046
Alignment:
Q  165 gttacacc-cagaatgactaatataccttttaactaaaataaaaatttcaaat 216  Q
    |||||||| |||||||||||||||||| |||||||||||||||||||||||||    
T  25032098 gttacacctcagaatgactaatataccctttaactaaaataaaaatttcaaat 25032046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 29296966 - 29296918
Alignment:
Q  171 cccagaatgactaatataccttttaactaaaataaaaatttcaaattaa 219  Q
    |||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  29296966 cccagaatgattaatataccctttaactaaaataaaaatttcaaattaa 29296918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 178 - 241
Target Start/End: Original strand, 33569351 - 33569417
Alignment:
Q  178 tgactaatataccttttaactaaaataaaaatttcaaattaat---aaatcatttcatccattgctt 241  Q
    ||||||||||||| |||||||||||||||||||||||||||||   ||||| |||||||||| ||||    
T  33569351 tgactaatataccctttaactaaaataaaaatttcaaattaatctaaaatcctttcatccatcgctt 33569417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 165 - 219
Target Start/End: Complemental strand, 18618192 - 18618137
Alignment:
Q  165 gttacaccc-agaatgactaatataccttttaactaaaataaaaatttcaaattaa 219  Q
    ||||||||| |||||||||||||||||  |||||||||||||||||||||||||||    
T  18618192 gttacaccctagaatgactaatataccccttaactaaaataaaaatttcaaattaa 18618137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 172 - 219
Target Start/End: Original strand, 33591312 - 33591359
Alignment:
Q  172 ccagaatgactaatataccttttaactaaaataaaaatttcaaattaa 219  Q
    ||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  33591312 ccagaatgactaatacaccctttaactaaaataaaaatttcaaattaa 33591359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 180 - 236
Target Start/End: Original strand, 8781541 - 8781600
Alignment:
Q  180 actaatataccttttaactaaaataaaaatttcaaattaat---aaatcatttcatccat 236  Q
    ||||||||||| |||||||||||||||||||||||||||||   ||||| ||||||||||    
T  8781541 actaatataccctttaactaaaataaaaatttcaaattaatctaaaatcctttcatccat 8781600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 8336180 - 8336132
Alignment:
Q  171 cccagaatgactaatataccttttaactaaaataaaaatttcaaattaa 219  Q
    |||| ||||||||||||||| |||||||||||||||||||| |||||||    
T  8336180 cccataatgactaatataccctttaactaaaataaaaattttaaattaa 8336132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 174 - 216
Target Start/End: Original strand, 41742822 - 41742864
Alignment:
Q  174 agaatgactaatataccttttaactaaaataaaaatttcaaat 216  Q
    ||||||||||||||||| ||||| |||||||||||||||||||    
T  41742822 agaatgactaatataccctttaattaaaataaaaatttcaaat 41742864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 174 - 219
Target Start/End: Original strand, 15471999 - 15472044
Alignment:
Q  174 agaatgactaatataccttttaactaaaataaaaatttcaaattaa 219  Q
    ||||||| ||||||| | ||||||||||||||||||||||||||||    
T  15471999 agaatgattaatatatcctttaactaaaataaaaatttcaaattaa 15472044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 165 - 219
Target Start/End: Original strand, 42674858 - 42674913
Alignment:
Q  165 gttacacc-cagaatgactaatataccttttaactaaaataaaaatttcaaattaa 219  Q
    |||||||| |||||||||||| ||||| ||||| |||||||||||||| |||||||    
T  42674858 gttacacctcagaatgactaacataccctttaattaaaataaaaattttaaattaa 42674913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 171 - 219
Target Start/End: Original strand, 104915 - 104963
Alignment:
Q  171 cccagaatgactaatataccttttaactaaaataaaaatttcaaattaa 219  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  104915 cccagaatgactaatataccctttaactaaaataaaaatttcaaattaa 104963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 32834935 - 32834887
Alignment:
Q  171 cccagaatgactaatataccttttaactaaaataaaaatttcaaattaa 219  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  32834935 cccagaatgactaatataccctttaactaaaataaaaatttcaaattaa 32834887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 165 - 219
Target Start/End: Complemental strand, 29998436 - 29998381
Alignment:
Q  165 gttacacc-cagaatgactaatataccttttaactaaaataaaaatttcaaattaa 219  Q
    |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||    
T  29998436 gttacacctcagaatgactaatataccctttaactaaaataaaaatttcaaattaa 29998381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 171 - 216
Target Start/End: Original strand, 35392870 - 35392915
Alignment:
Q  171 cccagaatgactaatataccttttaactaaaataaaaatttcaaat 216  Q
    |||||||||||||||||||| |||||||||||||||||||||||||    
T  35392870 cccagaatgactaatataccctttaactaaaataaaaatttcaaat 35392915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 174 - 219
Target Start/End: Complemental strand, 36782313 - 36782268
Alignment:
Q  174 agaatgactaatataccttttaactaaaataaaaatttcaaattaa 219  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||    
T  36782313 agaatgactaatataccctttaactaaaataaaaatttcaaattaa 36782268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 172 - 216
Target Start/End: Complemental strand, 20188294 - 20188250
Alignment:
Q  172 ccagaatgactaatataccttttaactaaaataaaaatttcaaat 216  Q
    ||||||| |||||||||||||||||||||||||||||||||||||    
T  20188294 ccagaataactaatataccttttaactaaaataaaaatttcaaat 20188250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 172 - 216
Target Start/End: Complemental strand, 20207363 - 20207319
Alignment:
Q  172 ccagaatgactaatataccttttaactaaaataaaaatttcaaat 216  Q
    ||||||| |||||||||||||||||||||||||||||||||||||    
T  20207363 ccagaataactaatataccttttaactaaaataaaaatttcaaat 20207319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 165 - 216
Target Start/End: Original strand, 30699353 - 30699405
Alignment:
Q  165 gttacacc-cagaatgactaatataccttttaactaaaataaaaatttcaaat 216  Q
    |||||||| |||||||||||||||||| |||||||||||||||||||||||||    
T  30699353 gttacacctcagaatgactaatataccctttaactaaaataaaaatttcaaat 30699405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 173 - 220
Target Start/End: Original strand, 1103894 - 1103941
Alignment:
Q  173 cagaatgactaatataccttttaactaaaataaaaatttcaaattaat 220  Q
    |||||||||||||||||| ||||||| |||||||||||||||||||||    
T  1103894 cagaatgactaatataccctttaactgaaataaaaatttcaaattaat 1103941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 165 - 219
Target Start/End: Complemental strand, 12987526 - 12987471
Alignment:
Q  165 gttacacc-cagaatgactaatataccttttaactaaaataaaaatttcaaattaa 219  Q
    |||||||| ||||||||||||||| || ||||||||||||||||||||||||||||    
T  12987526 gttacacctcagaatgactaatatgccctttaactaaaataaaaatttcaaattaa 12987471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 165 - 219
Target Start/End: Original strand, 24757290 - 24757345
Alignment:
Q  165 gttacaccc-agaatgactaatataccttttaactaaaataaaaatttcaaattaa 219  Q
    ||||||||| |||||||||| |||||| ||||||||||||||||||||||||||||    
T  24757290 gttacaccctagaatgactattataccctttaactaaaataaaaatttcaaattaa 24757345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 172 - 219
Target Start/End: Complemental strand, 31098022 - 31097975
Alignment:
Q  172 ccagaatgactaatataccttttaactaaaataaaaatttcaaattaa 219  Q
    ||||||||||||||||| | ||||||||||||||||||||||||||||    
T  31098022 ccagaatgactaatatatcctttaactaaaataaaaatttcaaattaa 31097975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 165 - 216
Target Start/End: Original strand, 482451 - 482503
Alignment:
Q  165 gttacaccc-agaatgactaatataccttttaactaaaataaaaatttcaaat 216  Q
    ||||||||| ||||||||||||||||| |||||||||||||||||||| ||||    
T  482451 gttacaccctagaatgactaatataccctttaactaaaataaaaattttaaat 482503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 219
Target Start/End: Complemental strand, 30656623 - 30656580
Alignment:
Q  176 aatgactaatataccttttaactaaaataaaaatttcaaattaa 219  Q
    ||||||||||||| |||||||||||||||||||||| |||||||    
T  30656623 aatgactaatatatcttttaactaaaataaaaattttaaattaa 30656580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 186 - 241
Target Start/End: Complemental strand, 5459293 - 5459235
Alignment:
Q  186 ataccttttaactaaaataaaaatttcaaattaat---aaatcatttcatccattgctt 241  Q
    ||||| |||||||||||||||||||||||||||||   ||||| |||||||||| ||||    
T  5459293 ataccctttaactaaaataaaaatttcaaattaatctaaaatcctttcatccatcgctt 5459235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 214
Target Start/End: Complemental strand, 27225637 - 27225605
Alignment:
Q  182 taatataccttttaactaaaataaaaatttcaa 214  Q
    ||||||||||||||| |||||||||||||||||    
T  27225637 taatataccttttaattaaaataaaaatttcaa 27225605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 171 - 219
Target Start/End: Original strand, 38742517 - 38742565
Alignment:
Q  171 cccagaatgactaatataccttttaactaaaataaaaatttcaaattaa 219  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  38742517 cccagaatgactaatataccctttaactaaaataaaaatttcaaattaa 38742565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 171 - 219
Target Start/End: Original strand, 41118029 - 41118077
Alignment:
Q  171 cccagaatgactaatataccttttaactaaaataaaaatttcaaattaa 219  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  41118029 cccagaatgactaatataccctttaactaaaataaaaatttcaaattaa 41118077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 165 - 219
Target Start/End: Complemental strand, 44509552 - 44509497
Alignment:
Q  165 gttacacc-cagaatgactaatataccttttaactaaaataaaaatttcaaattaa 219  Q
    |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||    
T  44509552 gttacacctcagaatgactaatataccctttaactaaaataaaaatttcaaattaa 44509497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 173 - 219
Target Start/End: Complemental strand, 47455800 - 47455754
Alignment:
Q  173 cagaatgactaatataccttttaactaaaataaaaatttcaaattaa 219  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||    
T  47455800 cagaatgactaatataccctttaactaaaataaaaatttcaaattaa 47455754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 171 - 216
Target Start/End: Original strand, 5543612 - 5543657
Alignment:
Q  171 cccagaatgactaatataccttttaactaaaataaaaatttcaaat 216  Q
    |||||||||||||||||||| |||||||||||||||||||||||||    
T  5543612 cccagaatgactaatataccctttaactaaaataaaaatttcaaat 5543657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 171 - 216
Target Start/End: Complemental strand, 31622705 - 31622660
Alignment:
Q  171 cccagaatgactaatataccttttaactaaaataaaaatttcaaat 216  Q
    |||||||||||||||||||| |||||||||||||||||||||||||    
T  31622705 cccagaatgactaatataccctttaactaaaataaaaatttcaaat 31622660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 25105936 - 25105888
Alignment:
Q  171 cccagaatgactaatataccttttaactaaaataaaaatttcaaattaa 219  Q
    |||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  25105936 cccaaaatgactaatataccctttaactaaaataaaaatttcaaattaa 25105888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 172 - 216
Target Start/End: Complemental strand, 44291875 - 44291831
Alignment:
Q  172 ccagaatgactaatataccttttaactaaaataaaaatttcaaat 216  Q
    ||||||| |||||||||||||||||||||||||||||||||||||    
T  44291875 ccagaataactaatataccttttaactaaaataaaaatttcaaat 44291831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 171 - 219
Target Start/End: Original strand, 47019898 - 47019946
Alignment:
Q  171 cccagaatgactaatataccttttaactaaaataaaaatttcaaattaa 219  Q
    |||||||||||||||||| | ||||||||||||||||||||||||||||    
T  47019898 cccagaatgactaatatatcctttaactaaaataaaaatttcaaattaa 47019946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 165 - 241
Target Start/End: Original strand, 3111203 - 3111282
Alignment:
Q  165 gttacacccagaatgactaatataccttttaactaaaataaaaatttcaaattaat---aaatcatttcatccattgctt 241  Q
    ||||||||||||||||||||||||  ||||||  ||||||||||||| ||||||||   ||||  |||||||||||||||    
T  3111203 gttacacccagaatgactaatatattttttaataaaaataaaaattttaaattaatctaaaattctttcatccattgctt 3111282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 175 - 219
Target Start/End: Original strand, 9740584 - 9740628
Alignment:
Q  175 gaatgactaatataccttttaactaaaataaaaatttcaaattaa 219  Q
    |||||||||||||||| ||||| ||||||||||||||||||||||    
T  9740584 gaatgactaatataccctttaattaaaataaaaatttcaaattaa 9740628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 165 - 216
Target Start/End: Complemental strand, 12849114 - 12849062
Alignment:
Q  165 gttacaccc-agaatgactaatataccttttaactaaaataaaaatttcaaat 216  Q
    ||||||||| ||||||||||||||||| ||||| |||||||||||||||||||    
T  12849114 gttacaccctagaatgactaatataccctttaattaaaataaaaatttcaaat 12849062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 171 - 219
Target Start/End: Original strand, 31587155 - 31587203
Alignment:
Q  171 cccagaatgactaatataccttttaactaaaataaaaatttcaaattaa 219  Q
    |||||||||||||||||||| ||||| ||||||||||| ||||||||||    
T  31587155 cccagaatgactaatataccctttaattaaaataaaaaattcaaattaa 31587203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 172 - 216
Target Start/End: Original strand, 40186015 - 40186059
Alignment:
Q  172 ccagaatgactaatataccttttaactaaaataaaaatttcaaat 216  Q
    ||||||| ||||||||||| |||||||||||||||||||||||||    
T  40186015 ccagaataactaatataccctttaactaaaataaaaatttcaaat 40186059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 219
Target Start/End: Complemental strand, 27902811 - 27902766
Alignment:
Q  172 ccagaatgactaatataccttttaactaaaataaaaatttcaaattaa 219  Q
    |||||||||||||||  || ||||||||||||||||||||||||||||    
T  27902811 ccagaatgactaata--ccctttaactaaaataaaaatttcaaattaa 27902766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 171 - 220
Target Start/End: Original strand, 38167537 - 38167586
Alignment:
Q  171 cccagaatgactaatataccttttaactaaaataaaaatttcaaattaat 220  Q
    ||||||||||| ||||||   ||||||| |||||||||||||||||||||    
T  38167537 cccagaatgaccaatatatgctttaactgaaataaaaatttcaaattaat 38167586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 171 - 219
Target Start/End: Original strand, 18676068 - 18676116
Alignment:
Q  171 cccagaatgactaatataccttttaactaaaataaaaatttcaaattaa 219  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  18676068 cccagaatgactaatataccctttaactaaaataaaaatttcaaattaa 18676116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 165 - 219
Target Start/End: Original strand, 742225 - 742280
Alignment:
Q  165 gttacaccc-agaatgactaatataccttttaactaaaataaaaatttcaaattaa 219  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||    
T  742225 gttacaccctagaatgactaatataccatttaactaaaataaaaatttcaaattaa 742280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 172 - 219
Target Start/End: Complemental strand, 33490422 - 33490375
Alignment:
Q  172 ccagaatgactaatataccttttaactaaaataaaaatttcaaattaa 219  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  33490422 ccagaatgactaatataccctttaactaaaataaaaatttcaaattaa 33490375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 171 - 216
Target Start/End: Complemental strand, 8063613 - 8063568
Alignment:
Q  171 cccagaatgactaatataccttttaactaaaataaaaatttcaaat 216  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||    
T  8063613 cccagaatgattaatataccctttaactaaaataaaaatttcaaat 8063568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 216
Target Start/End: Original strand, 28913540 - 28913583
Alignment:
Q  173 cagaatgactaatataccttttaactaaaataaaaatttcaaat 216  Q
    |||||||||||||||| | |||||||||||||||||||||||||    
T  28913540 cagaatgactaatatatcctttaactaaaataaaaatttcaaat 28913583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 10791163 - 10791116
Alignment:
Q  171 cccagaatgactaatataccttttaactaaaataaaaatttcaaattaa 219  Q
    |||||||||||||||||||| || ||||||||||||||||| |||||||    
T  10791163 cccagaatgactaatataccctt-aactaaaataaaaattttaaattaa 10791116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 165 - 220
Target Start/End: Original strand, 7553509 - 7553565
Alignment:
Q  165 gttacacc-cagaatgactaatataccttttaactaaaataaaaatttcaaattaat 220  Q
    |||||||| |||||||||||||||||| |||||||||||||||||||||||||||||    
T  7553509 gttacacctcagaatgactaatataccctttaactaaaataaaaatttcaaattaat 7553565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 171 - 241
Target Start/End: Complemental strand, 11310029 - 11309956
Alignment:
Q  171 cccagaatgactaatataccttttaactaaaataaaaatttcaaattaat---aaatcatttcatccattgctt 241  Q
    |||||| ||||||||||||| |||||||||||||||||||||||||||||   ||||| |||||||||| ||||    
T  11310029 cccagactgactaatataccctttaactaaaataaaaatttcaaattaatctaaaatcctttcatccatcgctt 11309956  T

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Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 173 - 219
Target Start/End: Original strand, 39677113 - 39677159
Alignment:
Q  173 cagaatgactaatataccttttaactaaaataaaaatttcaaattaa 219  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||    
T  39677113 cagaatgactaatataccctttaactaaaataaaaatttcaaattaa 39677159  T

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Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 171 - 216
Target Start/End: Original strand, 36224480 - 36224525
Alignment:
Q  171 cccagaatgactaatataccttttaactaaaataaaaatttcaaat 216  Q
    |||||||||||||||||||| |||||||||||||||||||||||||    
T  36224480 cccagaatgactaatataccctttaactaaaataaaaatttcaaat 36224525  T

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Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 171 - 216
Target Start/End: Complemental strand, 50622438 - 50622393
Alignment:
Q  171 cccagaatgactaatataccttttaactaaaataaaaatttcaaat 216  Q
    |||||||||||||||||||| |||||||||||||||||||||||||    
T  50622438 cccagaatgactaatataccctttaactaaaataaaaatttcaaat 50622393  T

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Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 171 - 219
Target Start/End: Original strand, 55281665 - 55281713
Alignment:
Q  171 cccagaatgactaatataccttttaactaaaataaaaatttcaaattaa 219  Q
    |||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  55281665 cccagaatgattaatataccctttaactaaaataaaaatttcaaattaa 55281713  T

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Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 173 - 219
Target Start/End: Complemental strand, 45885757 - 45885711
Alignment:
Q  173 cagaatgactaatataccttttaactaaaataaaaatttcaaattaa 219  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||    
T  45885757 cagaatgactaatatactctttaactaaaataaaaatttcaaattaa 45885711  T

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Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 171 - 216
Target Start/End: Original strand, 3874928 - 3874973
Alignment:
Q  171 cccagaatgactaatataccttttaactaaaataaaaatttcaaat 216  Q
    |||||||||||||||||| | |||||||||||||||||||||||||    
T  3874928 cccagaatgactaatatatcctttaactaaaataaaaatttcaaat 3874973  T

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Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 174 - 219
Target Start/End: Original strand, 7326942 - 7326987
Alignment:
Q  174 agaatgactaatataccttttaactaaaataaaaatttcaaattaa 219  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||||    
T  7326942 agaatgattaatataccctttaactaaaataaaaatttcaaattaa 7326987  T

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Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 171 - 219
Target Start/End: Original strand, 33115453 - 33115501
Alignment:
Q  171 cccagaatgactaatataccttttaactaaaataaaaatttcaaattaa 219  Q
    |||||||||||||||||||  |||||||||||||| |||||||||||||    
T  33115453 cccagaatgactaatatacactttaactaaaataagaatttcaaattaa 33115501  T

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Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 176 - 220
Target Start/End: Complemental strand, 44879027 - 44878983
Alignment:
Q  176 aatgactaatataccttttaactaaaataaaaatttcaaattaat 220  Q
    ||||||||||||||| |||||||||||||||||||| ||||||||    
T  44879027 aatgactaatataccctttaactaaaataaaaattttaaattaat 44878983  T

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Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 211
Target Start/End: Original strand, 3931006 - 3931045
Alignment:
Q  172 ccagaatgactaatataccttttaactaaaataaaaattt 211  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  3931006 ccagaatgactaatataccctttaactaaaataaaaattt 3931045  T

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Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 178 - 220
Target Start/End: Original strand, 11379934 - 11379976
Alignment:
Q  178 tgactaatataccttttaactaaaataaaaatttcaaattaat 220  Q
    ||||||||||| | |||||||||||||||||||||||||||||    
T  11379934 tgactaatatatcctttaactaaaataaaaatttcaaattaat 11379976  T

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Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 174 - 216
Target Start/End: Original strand, 36431765 - 36431807
Alignment:
Q  174 agaatgactaatataccttttaactaaaataaaaatttcaaat 216  Q
    ||||||||||||||||  |||||||||||||||||||||||||    
T  36431765 agaatgactaatatactctttaactaaaataaaaatttcaaat 36431807  T

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Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 171 - 216
Target Start/End: Original strand, 28867050 - 28867095
Alignment:
Q  171 cccagaatgactaatataccttttaactaaaataaaaatttcaaat 216  Q
    |||| ||||||||||||||| |||||||||||||| ||||||||||    
T  28867050 cccataatgactaatataccctttaactaaaataacaatttcaaat 28867095  T

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Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 171 - 216
Target Start/End: Complemental strand, 29924317 - 29924272
Alignment:
Q  171 cccagaatgactaatataccttttaactaaaataaaaatttcaaat 216  Q
    |||||||||| ||||||||| ||||| |||||||||||||||||||    
T  29924317 cccagaatgattaatataccctttaattaaaataaaaatttcaaat 29924272  T

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Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 172 - 211
Target Start/End: Original strand, 24744407 - 24744446
Alignment:
Q  172 ccagaatgactaatataccttttaactaaaataaaaattt 211  Q
    ||||||||| ||||||||| ||||||||||||||||||||    
T  24744407 ccagaatgattaatataccctttaactaaaataaaaattt 24744446  T

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Target: scaffold0548 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0548
Description:

Target: scaffold0548; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 171 - 241
Target Start/End: Original strand, 8373 - 8446
Alignment:
Q  171 cccagaatgactaatataccttttaactaaaataaaaatttcaaattaat---aaatcatttcatccattgctt 241  Q
    |||||| ||||||||||||| |||||||||||||||||||||||||||||   ||||| |||||||||| ||||    
T  8373 cccagactgactaatataccctttaactaaaataaaaatttcaaattaatctaaaatcctttcatccatcgctt 8446  T

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Target: scaffold0057 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 165 - 216
Target Start/End: Original strand, 42049 - 42101
Alignment:
Q  165 gttacaccca-gaatgactaatataccttttaactaaaataaaaatttcaaat 216  Q
    |||||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  42049 gttacacccaagaatgactaatataccctttaactaaaataaaaatttcaaat 42101  T

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Target: scaffold0562 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0562
Description:

Target: scaffold0562; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 171 - 216
Target Start/End: Original strand, 5747 - 5792
Alignment:
Q  171 cccagaatgactaatataccttttaactaaaataaaaatttcaaat 216  Q
    |||||||||||||||||| | |||||||||||||||||||||||||    
T  5747 cccagaatgactaatatatcctttaactaaaataaaaatttcaaat 5792  T

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Target: scaffold0081 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0081
Description:

Target: scaffold0081; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 171 - 220
Target Start/End: Complemental strand, 12248 - 12199
Alignment:
Q  171 cccagaatgactaatataccttttaactaaaataaaaatttcaaattaat 220  Q
    |||||||||||||||||||| |||||||||||||||| ||| ||||||||    
T  12248 cccagaatgactaatataccctttaactaaaataaaatttttaaattaat 12199  T

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Target: scaffold1360 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold1360
Description:

Target: scaffold1360; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 211
Target Start/End: Original strand, 386 - 425
Alignment:
Q  172 ccagaatgactaatataccttttaactaaaataaaaattt 211  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  386 ccagaatgactaatataccctttaactaaaataaaaattt 425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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