View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9755_high_1 (Length: 429)
Name: NF9755_high_1
Description: NF9755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9755_high_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 404; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 1 - 416
Target Start/End: Original strand, 31050941 - 31051356
Alignment:
| Q |
1 |
cccaaggagcaacattagtaacacttccaggggttggtccaccatttccagcagatgcaactaataatatgtttttagtgaatgcctgaaatgcacctat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
31050941 |
cccaaggagcaacattagtaacacttccaggggttggtccaccatttccagcagatgcaactaataatatgtttttagcgaatgcctgaaatgcacctat |
31051040 |
T |
|
| Q |
101 |
tgaaatttcatcggtaaaaatttcttcaaaatttgaactaggtcggcctccaacagaaactgagattatatcaacaccatcactaatggcttgatcgata |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31051041 |
tgaaatttcatcggtaaaaatttcttcaaaatttgaactagatcggcctccaacagaaactgagattatatcaacaccatcactaatggcttgatcgata |
31051140 |
T |
|
| Q |
201 |
gcagataatatatcagcaccataacaaactgcactatttccatctgcaattgtttgagaccaacacactttgtaggttacaactcttgattttggtgaac |
300 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31051141 |
gcagataatacatcagcaccataacaaactgcactatttccatctgcaattgtttgagaccaacacactttgtaggttacaactcttgattttggtgaac |
31051240 |
T |
|
| Q |
301 |
cacctttaatggtaccattgccgataccaaatatgcttgcacctggtacgaagtttccaccagctgttgatagtgtgtgagtaccatggccgtaaaagtc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31051241 |
cacctttaatggtaccattgccgataccaaatatgcttgcacctggtacgaagtttccaccagctgttgatagtgtgtgagtaccatggccgtaaaagtc |
31051340 |
T |
|
| Q |
401 |
acgtgctgtttgttgc |
416 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
31051341 |
acgtgctgtttgttgc |
31051356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 1 - 415
Target Start/End: Original strand, 31108493 - 31108895
Alignment:
| Q |
1 |
cccaaggagcaacattagtaacacttccaggggttggtccaccatttccagcagatgcaactaataatatgtttttagtgaatgcctgaaatgcacctat |
100 |
Q |
| |
|
|||| |||||||||||| ||||||||||||||| ||||| ||||||| |||||||||||||||||||| ||| ||| | ||| |||||||||||||| |
|
|
| T |
31108493 |
cccatggagcaacattaacaacacttccaggggtaggtccttcatttcccgcagatgcaactaataatatatttctagcaagtgcatgaaatgcacctat |
31108592 |
T |
|
| Q |
101 |
tgaaatttcatcggtaaaaatttcttcaaaatttgaactaggtcggcctccaacagaaactgagattatatcaacaccatcactaatggcttgatcgata |
200 |
Q |
| |
|
|||||| || || ||||||||||||||| |||||| ||||| | |||||||| ||||||| || ||||| |||||||||||| ||| |||||||| ||| |
|
|
| T |
31108593 |
tgaaatctcgtcagtaaaaatttcttcagaatttgtactagatgggcctccagcagaaacagatattatgtcaacaccatcatcaattgcttgatcaata |
31108692 |
T |
|
| Q |
201 |
gcagataatatatcagcaccataacaaactgcactatttccatctgcaattgtttgagaccaacacactttgtaggttacaactcttgattttggtgaac |
300 |
Q |
| |
|
|||||||||| |||||||||| | || |||| | |||| |||| ||||||| ||||||||||||||| ||||||| | | ||||||||| |
|
|
| T |
31108693 |
gcagataatacatcagcaccaaagca------actagtggcatc------tgttagagaccagcacactttgtaggttgcaactctagctcttggtgaac |
31108780 |
T |
|
| Q |
301 |
cacctttaatggtaccattgccgataccaaatatgcttgcacctggtacgaagtttccaccagctgttgatagtgtgtgagtaccatggccgtaaaagtc |
400 |
Q |
| |
|
| ||||| ||||||||||| || || |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
31108781 |
ctccttttatggtaccatttccaatgttaaatatgcttgcacctggtacgaaatttccaccagctgttgatagtgtgtgagtaccatggccaacgaagtc |
31108880 |
T |
|
| Q |
401 |
acgtgctgtttgttg |
415 |
Q |
| |
|
||| ||||||||||| |
|
|
| T |
31108881 |
acgcgctgtttgttg |
31108895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 1 - 409
Target Start/End: Original strand, 31063406 - 31063802
Alignment:
| Q |
1 |
cccaaggagcaacattagtaacacttccaggggttggtccaccatttccagcagatgcaactaataatatgtttttagtgaatgcctgaaatgcacctat |
100 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| ||||| ||||||| |||||||||||||||||||| ||| ||| | ||| |||||||||||||| |
|
|
| T |
31063406 |
cccaaggagcaacattaacaacacttccaggggtaggtccttcatttcccgcagatgcaactaataatatatttctagcaagtgcatgaaatgcacctat |
31063505 |
T |
|
| Q |
101 |
tgaaatttcatcggtaaaaatttcttcaaaatttgaactaggtcggcctccaacagaaactgagattatatcaacaccatcactaatggcttgatcgata |
200 |
Q |
| |
|
||||| || |||||||||||||||||| |||||| ||||| | |||||||| ||||||| || ||||| |||||||||||| ||| |||||||| ||| |
|
|
| T |
31063506 |
tgaaacctcgtcggtaaaaatttcttcagaatttgtactagatgggcctccagcagaaacagatattatgtcaacaccatcatcaattgcttgatcaata |
31063605 |
T |
|
| Q |
201 |
gcagataatatatcagcaccataacaaactgcactatttccatctgcaattgtttgagaccaacacactttgtaggttacaactcttgattttggtgaac |
300 |
Q |
| |
|
|||||||||| |||||||||| | ||| | | | ||| |||| ||||||| ||||||||||||||| ||||||| | | ||||||||| |
|
|
| T |
31063606 |
gcagataatacatcagcaccaaagcaa------------ctagcggcatctgttagagaccagcacactttgtaggttgcaactctagctcttggtgaac |
31063693 |
T |
|
| Q |
301 |
cacctttaatggtaccattgccgataccaaatatgcttgcacctggtacgaagtttccaccagctgttgatagtgtgtgagtaccatggccgtaaaagtc |
400 |
Q |
| |
|
| ||||| ||||||||||| || || ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| || || |||||| |
|
|
| T |
31063694 |
ctccttttatggtaccatttccaatgttaaatatgcttgcacctggtacgaagtttccaccggctgttgatagtgtatgagtaccgtgacctacaaagtc |
31063793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 1 - 415
Target Start/End: Original strand, 31146243 - 31146645
Alignment:
| Q |
1 |
cccaaggagcaacattagtaacacttccaggggttggtccaccatttccagcagatgcaactaataatatgtttttagtgaatgcctgaaatgcacctat |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||||||||| ||| ||| | ||| |||||||||||||| |
|
|
| T |
31146243 |
cccatggagcaacattagtaacacttccaggggtaggtccttcatttccagccgatgcaactaataatatatttctagcaagtgcatgaaatgcacctat |
31146342 |
T |
|
| Q |
101 |
tgaaatttcatcggtaaaaatttcttcaaaatttgaactaggtcggcctccaacagaaactgagattatatcaacaccatcactaatggcttgatcgata |
200 |
Q |
| |
|
|||||| ||||| |||||||| ||||| ||||| | ||||| ||||||| | ||||| || || | |||| |||| || ||| |||||||| ||| |
|
|
| T |
31146343 |
tgaaatctcatcagtaaaaataacttcaggatttgtattaggtttgcctccagccgaaacagaaatcaaatcagcaccgtcgtaaattgcttgatcaata |
31146442 |
T |
|
| Q |
201 |
gcagataatatatcagcaccataacaaactgcactatttccatctgcaattgtttgagaccaacacactttgtaggttacaactcttgattttggtgaac |
300 |
Q |
| |
|
|||| ||||| ||| |||||| | || || || |||||| || |||||||||| ||||||||||| ||||||||||| ||||||||| |
|
|
| T |
31146443 |
gcagctaatacatcggcaccaaagcagtctacaa------catctg------ttagagaccaacatgctttgtaggttgcaactcttgatcttggtgaac |
31146530 |
T |
|
| Q |
301 |
cacctttaatggtaccattgccgataccaaatatgcttgcacctggtacgaagtttccaccagctgttgatagtgtgtgagtaccatggccgtaaaagtc |
400 |
Q |
| |
|
||||||| |||||||| ||||| |||||||||||| |||| | |||||||||||||||| ||||||||||||||||| || |||||||| |||||| |
|
|
| T |
31146531 |
caccttttatggtaccgttgccaataccaaatatggttgcgttttgtacgaagtttccacctgctgttgatagtgtgtgtgtcccatggcctacaaagtc |
31146630 |
T |
|
| Q |
401 |
acgtgctgtttgttg |
415 |
Q |
| |
|
|| ||||||||||| |
|
|
| T |
31146631 |
tcgcgctgtttgttg |
31146645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 1 - 415
Target Start/End: Original strand, 31164069 - 31164471
Alignment:
| Q |
1 |
cccaaggagcaacattagtaacacttccaggggttggtccaccatttccagcagatgcaactaataatatgtttttagtgaatgcctgaaatgcacctat |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||||||||| ||| ||| | ||| |||||||||||||| |
|
|
| T |
31164069 |
cccatggagcaacattagtaacacttccaggggtaggtccttcatttccagccgatgcaactaataatatatttctagcaagtgcatgaaatgcacctat |
31164168 |
T |
|
| Q |
101 |
tgaaatttcatcggtaaaaatttcttcaaaatttgaactaggtcggcctccaacagaaactgagattatatcaacaccatcactaatggcttgatcgata |
200 |
Q |
| |
|
|||||| ||||| |||||||| ||||| ||||| | ||||| ||||||| | ||||| || || | |||| |||| || ||| |||||||| ||| |
|
|
| T |
31164169 |
tgaaatctcatcagtaaaaataacttcaggatttgtattaggtttgcctccagccgaaacagaaatcaaatcagcaccgtcgtaaattgcttgatcaata |
31164268 |
T |
|
| Q |
201 |
gcagataatatatcagcaccataacaaactgcactatttccatctgcaattgtttgagaccaacacactttgtaggttacaactcttgattttggtgaac |
300 |
Q |
| |
|
|||| ||||| ||| ||||| | || || || |||||| || |||||||||| ||||||||||| ||||||||||| ||||||||| |
|
|
| T |
31164269 |
gcagctaatacatcggcaccgaagcagtctacaa------catctg------ttagagaccaacatgctttgtaggttgcaactcttgatcttggtgaac |
31164356 |
T |
|
| Q |
301 |
cacctttaatggtaccattgccgataccaaatatgcttgcacctggtacgaagtttccaccagctgttgatagtgtgtgagtaccatggccgtaaaagtc |
400 |
Q |
| |
|
||||||| |||||||| ||||| |||||||||||| |||| | |||||||||||||||| ||||||||||||||||| || |||||||| |||||| |
|
|
| T |
31164357 |
caccttttatggtaccgttgccaataccaaatatggttgcgttttgtacgaagtttccacctgctgttgatagtgtgtgtgtcccatggcctacaaagtc |
31164456 |
T |
|
| Q |
401 |
acgtgctgtttgttg |
415 |
Q |
| |
|
|| ||||||||||| |
|
|
| T |
31164457 |
tcgcgctgtttgttg |
31164471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 256 - 406
Target Start/End: Complemental strand, 31201519 - 31201369
Alignment:
| Q |
256 |
gagaccaacacactttgtaggttacaactcttgattttggtgaaccacctttaatggtaccattgccgataccaaatatgcttgcacctggtacgaagtt |
355 |
Q |
| |
|
||||||| ||||||||||||||| |||| || | | |||| ||||||||||| | ||||||||||| ||| |||||| |||||| ||||||| ||||| |
|
|
| T |
31201519 |
gagaccagcacactttgtaggttgcaaccctagctcttggcgaaccaccttttacagtaccattgccaatagcaaatacacttgcatctggtacaaagtt |
31201420 |
T |
|
| Q |
356 |
tccaccagctgttgatagtgtgtgagtaccatggccgtaaaagtcacgtgc |
406 |
Q |
| |
|
||| |||||||||||||| || |||||||| ||||| ||||||| ||||| |
|
|
| T |
31201419 |
tcccccagctgttgatagagtatgagtaccgtggcctaaaaagtcgcgtgc |
31201369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 156 - 221
Target Start/End: Complemental strand, 31201607 - 31201542
Alignment:
| Q |
156 |
gaaactgagattatatcaacaccatcactaatggcttgatcgatagcagataatatatcagcacca |
221 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||| ||||||| ||||| ||| |||||| |
|
|
| T |
31201607 |
gaaagtgagattatatcaacaccatcactaatggcttgatcaatagcagctaatacatcggcacca |
31201542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University