View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9755_low_1 (Length: 640)
Name: NF9755_low_1
Description: NF9755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9755_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 571; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 571; E-Value: 0
Query Start/End: Original strand, 17 - 639
Target Start/End: Complemental strand, 32189869 - 32189247
Alignment:
| Q |
17 |
aattagagccaccaacgatgatcggaagatttccaccgctcatgattaaatcaatcactgaagttgatttttcgcgaaaatcattggatgtgaactctat |
116 |
Q |
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| T |
32189869 |
aattagagccaccaacgatgatcggaagatttccaccgctcatgattaaatcaatcgctgaagttgatttttcgcgaaaatcattggatgtgaactctat |
32189770 |
T |
|
| Q |
117 |
gttggggttatgtgttcctaataaatggtgtggtattcctttttgttcttctagagtgattttgtttgttactatgtccaaaccttcgtagatttgaatt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32189769 |
gttggggttatgtgttcctaataaatggtgtggtattcctttttgttcttctagagtgattttgtttgttactatgtccaaaccttcgtagatttgaatt |
32189670 |
T |
|
| Q |
217 |
ttgtctgagttgatgatttctgacgggaaataattggctaagtcaattgaaagctttgactttcctgttcctgttgcgcccatcaccaacactacatttt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32189669 |
ttgtctgagttgatgatttctgacgggaaataattggctaagtcaattgaaagctttgactttcctgttcctgttgcgcccatcaccaacactacatttt |
32189570 |
T |
|
| Q |
317 |
ctttttgaatttgtctcatattcagttttttgccactgcattgaacattgcttgttaagggttgtctaattagtctgcacatggacaatgagatgctcat |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32189569 |
ctttttgaatttgtctcatattcagttttttgccactgcattgaacattgcttgttaagggttgtctaattagtctgcacatggacaatgagatgctcat |
32189470 |
T |
|
| Q |
417 |
gatgatgataaaaattaattcaaagnnnnnnnncaagaaatttgatgtaagaattggaatcgattagtactacgtcgactttggtgggagacttttgatt |
516 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32189469 |
gatgatgataaaaattaattcaaagaaaaaaaacaagaaatttgatgtaagaattggaatcgattagtactacgtcgactttggtgggagacttttgatt |
32189370 |
T |
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| Q |
517 |
cagataacaactaacgtactaatatttgtctacacgaaaaattgttggagaggtgattttatgtttggtgatttggaggaatgtgattgtgaagggctaa |
616 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32189369 |
cagataacaactaacgtactaatatttgtctatacgaaaaattattggagaggtgattttatgtttggtgatttggaggaatgtgattgtgaagggctaa |
32189270 |
T |
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| Q |
617 |
ggtagcacaggttctgctcgttc |
639 |
Q |
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||| ||| ||||| |||| |||| |
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| T |
32189269 |
ggttgcataggttgtgctagttc |
32189247 |
T |
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