View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9755_low_15 (Length: 205)

Name: NF9755_low_15

Description: NF9755

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF9755_low_15

[»] chr6 (1 HSPs)

[»] chr5 (1 HSPs)

Target: chr6 (Bit Score: 156; Significance: 4e-83; HSPs: 1)

Name: chr6

Description:

Target: chr6; HSP #1

Raw Score: 156; E-Value: 4e-83

Query Start/End: Original strand, 35 - 190

Target Start/End: Original strand, 1665432 - 1665587

Alignment:

Q	35	tttgtttttgcagttaagctcctcgattggggtgaagagggccatcggtcagacgccgaaatagcctcattgagagcggcttttacccaagaagttgccg	134	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	1665432	tttgtttttgcagttaagctcctcgattggggtgaagagggccatcggtcagacgccgaaatagcctcattgagagcggcttttacccaagaagttgccg	1665531	T

Q	135	tatggcacaagcttgaccatcctaacgtaaccagggtaatatttcgggttttttct	190	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	1665532	tatggcacaagcttgaccatcctaacgtaaccagggtaatatttcgggttttttct	1665587	T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)

Name: chr5

Description:

Target: chr5; HSP #1

Raw Score: 31; E-Value: 0.00000002

Query Start/End: Original strand, 1 - 35

Target Start/End: Original strand, 1760066 - 1760100

Alignment:

Q	1	caaagagaaaaatttggattcaagatctttttcat	35	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|
T	1760066	caaagagaaaaatttggattcaaggtctttttcat	1760100	T

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