View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9755_low_8 (Length: 280)

Name: NF9755_low_8
Description: NF9755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9755_low_8
NF9755_low_8
[»] chr7 (10 HSPs)
chr7 (1-215)||(29196604-29196820)
chr7 (1-60)||(8062909-8062968)
chr7 (1-60)||(38838685-38838744)
chr7 (1-62)||(39608620-39608681)
chr7 (1-48)||(5362475-5362522)
chr7 (21-63)||(14669238-14669280)
chr7 (3-58)||(12849759-12849814)
chr7 (1-63)||(18942742-18942804)
chr7 (5-62)||(10228538-10228595)
chr7 (7-48)||(31498076-31498117)
[»] chr4 (14 HSPs)
chr4 (1-60)||(51151059-51151119)
chr4 (3-63)||(12034387-12034447)
chr4 (1-48)||(6364965-6365012)
chr4 (2-47)||(4161643-4161688)
chr4 (2-63)||(17381289-17381350)
chr4 (1-48)||(20217492-20217539)
chr4 (1-60)||(35255502-35255561)
chr4 (2-48)||(971865-971911)
chr4 (2-60)||(12922174-12922232)
chr4 (1-47)||(46805055-46805101)
chr4 (1-49)||(4215206-4215254)
chr4 (3-63)||(17381591-17381651)
chr4 (3-63)||(26499284-26499344)
chr4 (1-37)||(30623748-30623784)
[»] chr2 (4 HSPs)
chr2 (1-47)||(7165785-7165831)
chr2 (1-63)||(40124269-40124331)
chr2 (3-45)||(18903210-18903252)
chr2 (3-72)||(20167633-20167702)
[»] chr3 (14 HSPs)
chr3 (3-48)||(51889777-51889822)
chr3 (2-60)||(41898060-41898118)
chr3 (2-63)||(14984412-14984472)
chr3 (10-58)||(30843549-30843597)
chr3 (1-48)||(1324510-1324557)
chr3 (10-48)||(257828-257866)
chr3 (2-44)||(31186452-31186494)
chr3 (2-48)||(47199727-47199773)
chr3 (1-42)||(26499522-26499563)
chr3 (3-48)||(30843845-30843890)
chr3 (1-58)||(40619229-40619286)
chr3 (3-63)||(7672342-7672402)
chr3 (3-63)||(26483042-26483102)
chr3 (1-45)||(51758498-51758542)
[»] chr1 (13 HSPs)
chr1 (11-60)||(33746808-33746857)
chr1 (2-58)||(19464225-19464281)
chr1 (1-60)||(50804274-50804333)
chr1 (1-63)||(10018709-10018770)
chr1 (1-63)||(16192283-16192345)
chr1 (3-63)||(6728037-6728097)
chr1 (19-63)||(32669790-32669834)
chr1 (3-63)||(36144790-36144850)
chr1 (1-48)||(45679524-45679571)
chr1 (2-60)||(33747277-33747335)
chr1 (2-63)||(32670020-32670081)
chr1 (11-44)||(33745160-33745193)
chr1 (11-44)||(33746355-33746388)
[»] chr5 (11 HSPs)
chr5 (2-63)||(16127055-16127116)
chr5 (21-62)||(17676853-17676894)
chr5 (1-48)||(1276780-1276827)
chr5 (1-36)||(16750328-16750363)
chr5 (1-47)||(22391714-22391760)
chr5 (2-63)||(6217683-6217744)
chr5 (1-58)||(27001425-27001482)
chr5 (2-63)||(29686431-29686492)
chr5 (3-63)||(18970274-18970334)
chr5 (7-63)||(26675314-26675370)
chr5 (7-63)||(26946922-26946978)
[»] scaffold0053 (1 HSPs)
scaffold0053 (2-53)||(14755-14806)
[»] chr8 (8 HSPs)
chr8 (1-60)||(4586758-4586817)
chr8 (1-48)||(41302651-41302698)
chr8 (2-48)||(23357425-23357471)
chr8 (1-46)||(10029012-10029057)
chr8 (3-63)||(8340346-8340406)
chr8 (1-49)||(14532458-14532506)
chr8 (2-70)||(17488233-17488301)
chr8 (3-63)||(21601913-21601972)
[»] chr6 (7 HSPs)
chr6 (1-36)||(7955190-7955225)
chr6 (1-63)||(19264761-19264822)
chr6 (10-48)||(27223701-27223739)
chr6 (2-36)||(29920451-29920485)
chr6 (2-48)||(34937449-34937495)
chr6 (26-63)||(516056-516093)
chr6 (3-48)||(33806670-33806715)
[»] scaffold0086 (1 HSPs)
scaffold0086 (3-63)||(21898-21958)


Alignment Details
Target: chr7 (Bit Score: 170; Significance: 3e-91; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 29196820 - 29196604
Alignment:
Q  1 aaaattttgatacattgaaagattattgtgactactcgttacacattcgaggaccaaaatgacggttacctcatataataggttttagttgatacaaaac 100  Q
    |||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||| |||||||||| | ||||||||||||||||||||||||||||    
T  29196820 aaaattttgatacattgaaaaactattgtgactattcgttacacattcgaggaccaaagtgacggttacatgatataataggttttagttgatacaaaac 29196721  T
Q  101 caaaagctaagaagtgct--tgttatcctctttttatttgtatttcaatactattactaagaaactattaatggatacgattaatgtttgacgaatcaac 198  Q
    ||||||||||||||||||  ||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  29196720 caaaagctaagaagtgcttatgttatcctctttttctttgtatttcaatattattaataagaaactattaatggatacgattaatgtttgacgaatcaac 29196621  T
Q  199 atgtcatagatcctaag 215  Q
    |||||||||||||||||    
T  29196620 atgtcatagatcctaag 29196604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 8062909 - 8062968
Alignment:
Q  1 aaaattttgatacattgaaagattattgtgactactcgttacacattcgaggaccaaaat 60  Q
    |||||||| ||||||||| ||| ||||||||||||||||||||||||| |||||||||||    
T  8062909 aaaattttaatacattgacagactattgtgactactcgttacacattcaaggaccaaaat 8062968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 38838685 - 38838744
Alignment:
Q  1 aaaattttgatacattgaaagattattgtgactactcgttacacattcgaggaccaaaat 60  Q
    |||||||| ||||||||| ||| |||||||||||||||||||||||||  ||||||||||    
T  38838685 aaaattttaatacattgatagaatattgtgactactcgttacacattcagggaccaaaat 38838744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 39608620 - 39608681
Alignment:
Q  1 aaaattttgatacattgaaagattattgtgactactcgttacacattcgaggaccaaaatga 62  Q
    |||||||||||||||||||| | |||||| ||||||| |||||||||| ||||| |||||||    
T  39608620 aaaattttgatacattgaaaaactattgtaactactccttacacattcaaggactaaaatga 39608681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 5362475 - 5362522
Alignment:
Q  1 aaaattttgatacattgaaagattattgtgactactcgttacacattc 48  Q
    ||||||||||||||||||| ||||||||||||||||| ||||| ||||    
T  5362475 aaaattttgatacattgaatgattattgtgactactccttacatattc 5362522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 63
Target Start/End: Complemental strand, 14669280 - 14669238
Alignment:
Q  21 gattattgtgactactcgttacacattcgaggaccaaaatgac 63  Q
    |||| ||||||||||||||||||||||| ||||||||||||||    
T  14669280 gattgttgtgactactcgttacacattcaaggaccaaaatgac 14669238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 58
Target Start/End: Original strand, 12849759 - 12849814
Alignment:
Q  3 aattttgatacattgaaagattattgtgactactcgttacacattcgaggaccaaa 58  Q
    |||||||||||||| ||||| |||||||||||||| || ||||||| || ||||||    
T  12849759 aattttgatacattaaaagactattgtgactactcattgcacattcaagaaccaaa 12849814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 18942804 - 18942742
Alignment:
Q  1 aaaattttgatacattgaaagattattgtgactactcgttacacattcgaggaccaaaatgac 63  Q
    ||||||||||||||||||  || |||| |||||| || ||||||||||  |||||||||||||    
T  18942804 aaaattttgatacattgagtgactattatgactattccttacacattcagggaccaaaatgac 18942742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 62
Target Start/End: Complemental strand, 10228595 - 10228538
Alignment:
Q  5 ttttgatacattgaaagattattgtgactactcgttacacattcgaggaccaaaatga 62  Q
    ||||||||||||||| | ||||||| |||| ||||||||||||  | |||||||||||    
T  10228595 ttttgatacattgaagggttattgtaactaatcgttacacatttaaagaccaaaatga 10228538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 48
Target Start/End: Original strand, 31498076 - 31498117
Alignment:
Q  7 ttgatacattgaaagattattgtgactactcgttacacattc 48  Q
    |||||||||||||| |||||||| ||||||||||||| ||||    
T  31498076 ttgatacattgaaatattattgtaactactcgttacaaattc 31498117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 51151059 - 51151119
Alignment:
Q  1 aaaattttgatacattgaaagatt-attgtgactactcgttacacattcgaggaccaaaat 60  Q
    |||||||| ||||||||| ||||| |||||||||||||||||||||||| |||||||||||    
T  51151059 aaaattttaatacattgagagatttattgtgactactcgttacacattcaaggaccaaaat 51151119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 12034447 - 12034387
Alignment:
Q  3 aattttgatacattgaaagattattgtgactactcgttacacattcgaggaccaaaatgac 63  Q
    ||||||||||||||||  || |||||||||||||||||| ||||||  |||||||||||||    
T  12034447 aattttgatacattgagggactattgtgactactcgttatacattcagggaccaaaatgac 12034387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 6364965 - 6365012
Alignment:
Q  1 aaaattttgatacattgaaagattattgtgactactcgttacacattc 48  Q
    ||||||||| |||||| ||||||||||||||||||| |||||||||||    
T  6364965 aaaattttgttacattaaaagattattgtgactactagttacacattc 6365012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 47
Target Start/End: Complemental strand, 4161688 - 4161643
Alignment:
Q  2 aaattttgatacattgaaagattattgtgactactcgttacacatt 47  Q
    |||||||||||||||||| || |||||||||||||| |||||||||    
T  4161688 aaattttgatacattgaaggactattgtgactactcattacacatt 4161643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 63
Target Start/End: Complemental strand, 17381350 - 17381289
Alignment:
Q  2 aaattttgatacattgaaagattattgtgactactcgttacacattcgaggaccaaaatgac 63  Q
    |||||||||||||||||| || ||||||||||||| | |||||||||  | |||||||||||    
T  17381350 aaattttgatacattgaaggactattgtgactacttgctacacattcaggaaccaaaatgac 17381289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 20217492 - 20217539
Alignment:
Q  1 aaaattttgatacattgaaagattattgtgactactcgttacacattc 48  Q
    |||||||||||||||||| ||| ||||||| |||||||||| ||||||    
T  20217492 aaaattttgatacattgagagactattgtggctactcgttatacattc 20217539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 35255502 - 35255561
Alignment:
Q  1 aaaattttgatacattgaaagattattgtgactactcgttacacattcgaggaccaaaat 60  Q
    |||||||| ||||||||| ||| |||||||||||||||||||| |||   ||||||||||    
T  35255502 aaaattttaatacattgagagactattgtgactactcgttacatatttagggaccaaaat 35255561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 48
Target Start/End: Complemental strand, 971911 - 971865
Alignment:
Q  2 aaattttgatacattgaaagattattgtgactactcgttacacattc 48  Q
    |||||||||||||||||| || ||||||||| |||||||||| ||||    
T  971911 aaattttgatacattgaatgactattgtgacaactcgttacaaattc 971865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 60
Target Start/End: Complemental strand, 12922232 - 12922174
Alignment:
Q  2 aaattttgatacattgaaagattattgtgactactcgttacacattcgaggaccaaaat 60  Q
    |||||| |||||||||||| | |||||||||||||  ||||||||||  ||||||||||    
T  12922232 aaatttcgatacattgaaatactattgtgactacttattacacattcagggaccaaaat 12922174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 46805055 - 46805101
Alignment:
Q  1 aaaattttgatacattgaaagattattgtgactactcgttacacatt 47  Q
    |||||||| ||| ||||||||| |||| |||||||||||||||||||    
T  46805055 aaaattttaatatattgaaagactattatgactactcgttacacatt 46805101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 4215206 - 4215254
Alignment:
Q  1 aaaattttgatacattgaaagattattgtgactactcgttacacattcg 49  Q
    ||||||||||| ||||||  || ||||| ||||||||||||||||||||    
T  4215206 aaaattttgattcattgagggactattgcgactactcgttacacattcg 4215254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 17381591 - 17381651
Alignment:
Q  3 aattttgatacattgaaagattattgtgactactcgttacacattcgaggaccaaaatgac 63  Q
    ||||||||||||||||  || ||||||||||||| ||||| |||||  |||||||| ||||    
T  17381591 aattttgatacattgagggactattgtgactacttgttactcattcagggaccaaagtgac 17381651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 26499344 - 26499284
Alignment:
Q  3 aattttgatacattgaaagattattgtgactactcgttacacattcgaggaccaaaatgac 63  Q
    |||||| ||||||| | |||||||||||||||||  ||||||||||  | |||||||||||    
T  26499344 aattttaatacattaagagattattgtgactactttttacacattcaggaaccaaaatgac 26499284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 30623748 - 30623784
Alignment:
Q  1 aaaattttgatacattgaaagattattgtgactactc 37  Q
    |||||||||||||||| |||||||||||||| |||||    
T  30623748 aaaattttgatacattaaaagattattgtgattactc 30623784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 7165785 - 7165831
Alignment:
Q  1 aaaattttgatacattgaaagattattgtgactactcgttacacatt 47  Q
    |||||||| ||||||||||||| ||||||||||||||||||||||||    
T  7165785 aaaattttaatacattgaaagactattgtgactactcgttacacatt 7165831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 40124331 - 40124269
Alignment:
Q  1 aaaattttgatacattgaaagattattgtgactactcgttacacattcgaggaccaaaatgac 63  Q
    ||||||| |||||||| |  || ||||||||||||||||||||||||| ||||||||| ||||    
T  40124331 aaaatttcgatacattaatggactattgtgactactcgttacacattcaaggaccaaagtgac 40124269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 45
Target Start/End: Original strand, 18903210 - 18903252
Alignment:
Q  3 aattttgatacattgaaagattattgtgactactcgttacaca 45  Q
    ||||| ||||||||||| || ||||||||||||||||||||||    
T  18903210 aatttcgatacattgaatgactattgtgactactcgttacaca 18903252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 72
Target Start/End: Original strand, 20167633 - 20167702
Alignment:
Q  3 aattttgatacattgaaagattattgtgactactcgttacacattcgaggaccaaaatgacggttacctc 72  Q
    ||||||||| ||||||  || ||||||||||||| ||||||||||  | ||||||||||||  |||||||    
T  20167633 aattttgatgcattgagtgactattgtgactacttgttacacatttaaagaccaaaatgactattacctc 20167702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 48
Target Start/End: Complemental strand, 51889822 - 51889777
Alignment:
Q  3 aattttgatacattgaaagattattgtgactactcgttacacattc 48  Q
    |||||||||||||||||||| |||||||||||||| ||||||||||    
T  51889822 aattttgatacattgaaagactattgtgactactccttacacattc 51889777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 60
Target Start/End: Original strand, 41898060 - 41898118
Alignment:
Q  2 aaattttgatacattgaaagattattgtgactactcgttacacattcgaggaccaaaat 60  Q
    |||||||  ||||||| |||| |||||||| |||||||||||||||| |||||||||||    
T  41898060 aaattttagtacattgtaagactattgtgattactcgttacacattcaaggaccaaaat 41898118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 63
Target Start/End: Complemental strand, 14984472 - 14984412
Alignment:
Q  2 aaattttgatacattgaaagattattgtgactactcgttacacattcgaggaccaaaatgac 63  Q
    |||||| |||| |||||  || ||||||||||||||||||||||||| ||||||||||||||    
T  14984472 aaatttcgatatattgagggactattgtgactactcgttacacattc-aggaccaaaatgac 14984412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 58
Target Start/End: Complemental strand, 30843597 - 30843549
Alignment:
Q  10 atacattgaaagattattgtgactactcgttacacattcgaggaccaaa 58  Q
    ||||||||||||| |||||||||||||| |||||||| | |||||||||    
T  30843597 atacattgaaagactattgtgactactcattacacatgcaaggaccaaa 30843549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 1324557 - 1324510
Alignment:
Q  1 aaaattttgatacattgaaagattattgtgactactcgttacacattc 48  Q
    ||||||||||||||| ||| ||||||||||| ||||| ||||||||||    
T  1324557 aaaattttgatacatcgaaggattattgtgattactcattacacattc 1324510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 48
Target Start/End: Complemental strand, 257866 - 257828
Alignment:
Q  10 atacattgaaagattattgtgactactcgttacacattc 48  Q
    ||||||| |||||||||||| ||||||||||||||||||    
T  257866 atacattcaaagattattgttactactcgttacacattc 257828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 44
Target Start/End: Complemental strand, 31186494 - 31186452
Alignment:
Q  2 aaattttgatacattgaaagattattgtgactactcgttacac 44  Q
    ||||||||||||||||||||| |||||| |||||| |||||||    
T  31186494 aaattttgatacattgaaagactattgtaactacttgttacac 31186452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 48
Target Start/End: Complemental strand, 47199773 - 47199727
Alignment:
Q  2 aaattttgatacattgaaagattattgtgactactcgttacacattc 48  Q
    ||||||||||||||||||  |||||||||||| ||| ||||||||||    
T  47199773 aaattttgatacattgaagaattattgtgacttctcattacacattc 47199727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 26499563 - 26499522
Alignment:
Q  1 aaaattttgatacattgaaagattattgtgactactcgttac 42  Q
    |||||||||||||||||||  |||||||||||||||| ||||    
T  26499563 aaaattttgatacattgaagtattattgtgactactcattac 26499522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 48
Target Start/End: Original strand, 30843845 - 30843890
Alignment:
Q  3 aattttgatacattgaaagattattgtgactactcgttacacattc 48  Q
    |||||||||||||| | ||| |||||||||||||| ||||||||||    
T  30843845 aattttgatacattaagagactattgtgactactcattacacattc 30843890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 40619229 - 40619286
Alignment:
Q  1 aaaattttgatacattgaaagattattgtgactactcgttacacattcgaggaccaaa 58  Q
    ||||||||||||||||||  ||||| | ||||||||| |||||||||| |||| ||||    
T  40619229 aaaattttgatacattgagggattaatatgactactcattacacattcaaggatcaaa 40619286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 7672402 - 7672342
Alignment:
Q  3 aattttgatacattgaaagattattgtgactactcgttacacattcgaggaccaaaatgac 63  Q
    |||||| ||||||| |||||||||| | |||| |  |||||||||| ||||||||||||||    
T  7672402 aattttaatacattaaaagattattataactatttattacacattcaaggaccaaaatgac 7672342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 26483102 - 26483042
Alignment:
Q  3 aattttgatacattgaaagattattgtgactactcgttacacattcgaggaccaaaatgac 63  Q
    |||||||||||||| || || ||||||| |||||||||| ||||   ||||||||||||||    
T  26483102 aattttgatacattaaatgactattgtgtctactcgttatacatctaaggaccaaaatgac 26483042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 51758542 - 51758498
Alignment:
Q  1 aaaattttgatacattgaaagattattgtgactactcgttacaca 45  Q
    ||||||||||||||||||| |||||| || ||||||| |||||||    
T  51758542 aaaattttgatacattgaatgattatcgttactactcattacaca 51758498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 60
Target Start/End: Complemental strand, 33746857 - 33746808
Alignment:
Q  11 tacattgaaagattattgtgactactcgttacacattcgaggaccaaaat 60  Q
    ||||||||| |||||||||||||||||||||||||||| ||| |||||||    
T  33746857 tacattgaatgattattgtgactactcgttacacattcaagggccaaaat 33746808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 19464281 - 19464225
Alignment:
Q  2 aaattttgatacattgaaagattattgtgactactcgttacacattcgaggaccaaa 58  Q
    |||||||||||||||||| || ||||||||||||| ||||||||||  |||||||||    
T  19464281 aaattttgatacattgaaggactattgtgactacttgttacacatttaaggaccaaa 19464225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 50804333 - 50804274
Alignment:
Q  1 aaaattttgatacattgaaagattattgtgactactcgttacacattcgaggaccaaaat 60  Q
    |||||||||| ||||| ||||| ||||||||| ||||||||||||||| ||||| |||||    
T  50804333 aaaattttgacacattcaaagactattgtgaccactcgttacacattcaaggactaaaat 50804274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 10018770 - 10018709
Alignment:
Q  1 aaaattttgatacattgaaagattattgtgactactcgttacacattcgaggaccaaaatgac 63  Q
    |||||||||||||||||| ||| ||||||||||||| |||||| |||| |||| |||||||||    
T  10018770 aaaattttgatacattgatagactattgtgactactggttacatattc-aggaacaaaatgac 10018709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 16192283 - 16192345
Alignment:
Q  1 aaaattttgatacattgaaagattattgtgactactcgttacacattcgaggaccaaaatgac 63  Q
    ||||||||||||||||||| || |||| |||||||| ||||||||||| || || ||||||||    
T  16192283 aaaattttgatacattgaaggaatattatgactacttgttacacattcaagtactaaaatgac 16192345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 6728037 - 6728097
Alignment:
Q  3 aattttgatacattgaaagattattgtgactactcgttacacattcgaggaccaaaatgac 63  Q
    ||||||||| ||||||| || ||||||||||| |||||||||||||  |||| ||||||||    
T  6728037 aattttgattcattgaaggactattgtgactattcgttacacattcagggacgaaaatgac 6728097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 32669834 - 32669790
Alignment:
Q  19 aagattattgtgactactcgttacacattcgaggaccaaaatgac 63  Q
    |||| |||||||||||||||||||||||||  |||||||||||||    
T  32669834 aagactattgtgactactcgttacacattcatggaccaaaatgac 32669790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 36144850 - 36144790
Alignment:
Q  3 aattttgatacattgaaagattattgtgactactcgttacacattcgaggaccaaaatgac 63  Q
    |||||||||||||||  ||| |||||||| ||||| ||||| |||| ||||||||||||||    
T  36144850 aattttgatacattgggagagtattgtgattactcattacatattcaaggaccaaaatgac 36144790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 45679571 - 45679524
Alignment:
Q  1 aaaattttgatacattgaaagattattgtgactactcgttacacattc 48  Q
    |||||||| |||| ||||  ||||||||||||||||||||||||||||    
T  45679571 aaaattttaatacgttgatggattattgtgactactcgttacacattc 45679524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 60
Target Start/End: Complemental strand, 33747335 - 33747277
Alignment:
Q  2 aaattttgatacattgaaagattattgtgactactcgttacacattcgaggaccaaaat 60  Q
    |||||| |||||||||||  | ||||||||||||| ||||||||||| ||| |||||||    
T  33747335 aaatttcgatacattgaagaactattgtgactacttgttacacattcaaggtccaaaat 33747277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 63
Target Start/End: Original strand, 32670020 - 32670081
Alignment:
Q  2 aaattttgatacattgaaagattattgtgactactcgttacacattcgaggaccaaaatgac 63  Q
    |||||| ||| ||||||| || |||||||| ||||||||||||||||  ||| |||||||||    
T  32670020 aaatttcgatccattgaaggactattgtgaatactcgttacacattcagggatcaaaatgac 32670081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 44
Target Start/End: Complemental strand, 33745193 - 33745160
Alignment:
Q  11 tacattgaaagattattgtgactactcgttacac 44  Q
    ||||||||| ||||||||||||||||||||||||    
T  33745193 tacattgaatgattattgtgactactcgttacac 33745160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 44
Target Start/End: Complemental strand, 33746388 - 33746355
Alignment:
Q  11 tacattgaaagattattgtgactactcgttacac 44  Q
    ||||||||| ||||||||||||||||||||||||    
T  33746388 tacattgaatgattattgtgactactcgttacac 33746355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 63
Target Start/End: Complemental strand, 16127116 - 16127055
Alignment:
Q  2 aaattttgatacattgaaagattattgtgactactcgttacacattcgaggaccaaaatgac 63  Q
    |||||||||||| |||| ||| |||||||||||||| |||||||||   |||||||||||||    
T  16127116 aaattttgatactttgagagactattgtgactactccttacacatttagggaccaaaatgac 16127055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 62
Target Start/End: Original strand, 17676853 - 17676894
Alignment:
Q  21 gattattgtgactactcgttacacattcgaggaccaaaatga 62  Q
    |||| ||||||||||||||||||||||| |||||||||||||    
T  17676853 gattgttgtgactactcgttacacattcaaggaccaaaatga 17676894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 1276780 - 1276827
Alignment:
Q  1 aaaattttgatacattgaaagattattgtgactactcgttacacattc 48  Q
    ||||||||||| ||||||  |||||||||| |||||||||||||||||    
T  1276780 aaaattttgatgcattgatcgattattgtggctactcgttacacattc 1276827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 16750328 - 16750363
Alignment:
Q  1 aaaattttgatacattgaaagattattgtgactact 36  Q
    |||||||||||||||| |||||||||||||||||||    
T  16750328 aaaattttgatacattaaaagattattgtgactact 16750363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 22391760 - 22391714
Alignment:
Q  1 aaaattttgatacattgaaagattattgtgactactcgttacacatt 47  Q
    |||||||||||| ||||||||| |||| |||||| ||||||||||||    
T  22391760 aaaattttgatatattgaaagactattatgactattcgttacacatt 22391714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 63
Target Start/End: Original strand, 6217683 - 6217744
Alignment:
Q  2 aaattttgatacattgaaagattattgtgactactcgttacacattcgaggaccaaaatgac 63  Q
    |||||||||||||||||  || ||||||| ||| ||| |||||||||  |||||||||||||    
T  6217683 aaattttgatacattgagggactattgtggctattcgctacacattcatggaccaaaatgac 6217744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 27001425 - 27001482
Alignment:
Q  1 aaaattttgatacattgaaagattattgtgactactcgttacacattcgaggaccaaa 58  Q
    |||||||||||| || || ||| |||||||||||||| |||||||||| || ||||||    
T  27001425 aaaattttgatatatcgagagactattgtgactactcattacacattcaagaaccaaa 27001482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 63
Target Start/End: Complemental strand, 29686492 - 29686431
Alignment:
Q  2 aaattttgatacattgaaagattattgtgactactcgttacacattcgaggaccaaaatgac 63  Q
    ||||||| |||||||||  ||||||||||||||||| ||| ||||||  |||||||| ||||    
T  29686492 aaattttaatacattgagggattattgtgactactcattatacattcatggaccaaagtgac 29686431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 18970274 - 18970334
Alignment:
Q  3 aattttgatacattgaaagattattgtgactactcgttacacattcgaggaccaaaatgac 63  Q
    ||||| |||||||| || || ||||||| |||||||||| ||||||  |||||||||||||    
T  18970274 aatttggatacattcaaggactattgtggctactcgttatacattcctggaccaaaatgac 18970334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 63
Target Start/End: Original strand, 26675314 - 26675370
Alignment:
Q  7 ttgatacattgaaagattattgtgactactcgttacacattcgaggaccaaaatgac 63  Q
    |||||||||| |||||||||||||| || || |||||||||| || |||||| ||||    
T  26675314 ttgatacattaaaagattattgtgattagtcattacacattcaagaaccaaagtgac 26675370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 63
Target Start/End: Original strand, 26946922 - 26946978
Alignment:
Q  7 ttgatacattgaaagattattgtgactactcgttacacattcgaggaccaaaatgac 63  Q
    |||||||||| |||||||||||||| || || |||||||||| || |||||| ||||    
T  26946922 ttgatacattaaaagattattgtgattagtcattacacattcaagaaccaaagtgac 26946978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 53
Target Start/End: Complemental strand, 14806 - 14755
Alignment:
Q  2 aaattttgatacattgaaagattattgtgactactcgttacacattcgagga 53  Q
    |||||||||||||||||| |||||||||  ||||||||||||| ||| ||||    
T  14806 aaattttgatacattgaaggattattgttgctactcgttacactttcaagga 14755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 4586817 - 4586758
Alignment:
Q  1 aaaattttgatacattgaaagattattgtgactactcgttacacattcgaggaccaaaat 60  Q
    |||||||| ||||||| | ||| |||||| |||||||||||||||||| |||| ||||||    
T  4586817 aaaattttaatacattaagagactattgtaactactcgttacacattcaaggatcaaaat 4586758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 41302698 - 41302651
Alignment:
Q  1 aaaattttgatacattgaaagattattgtgactactcgttacacattc 48  Q
    |||||||| |||| |||||||| |||||||| ||||||||||||||||    
T  41302698 aaaattttaatactttgaaagactattgtgattactcgttacacattc 41302651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 48
Target Start/End: Original strand, 23357425 - 23357471
Alignment:
Q  2 aaattttgatacattgaaagattattgtgactactcgttacacattc 48  Q
    |||||| |||||||| | |||||||||||||||||| ||||||||||    
T  23357425 aaatttagatacattaagagattattgtgactactcattacacattc 23357471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 10029012 - 10029057
Alignment:
Q  1 aaaattttgatacattgaaagattattgtgactactcgttacacat 46  Q
    ||||||||||||||||||| || |||||| |||||||||| |||||    
T  10029012 aaaattttgatacattgaatgactattgtaactactcgttgcacat 10029057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 8340346 - 8340406
Alignment:
Q  3 aattttgatacattgaaagattattgtgactactcgttacacattcgaggaccaaaatgac 63  Q
    |||||||||||||| || || | |||||||||||| ||| |||||| || |||||||||||    
T  8340346 aattttgatacattaaaggactgttgtgactactcattatacattcaagaaccaaaatgac 8340406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 14532458 - 14532506
Alignment:
Q  1 aaaattttgatacattgaaagattattgtgactactcgttacacattcg 49  Q
    |||||||||||| ||| | ||| |||||||||||||| |||||||||||    
T  14532458 aaaattttgatatattaagagactattgtgactactcattacacattcg 14532506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 70
Target Start/End: Original strand, 17488233 - 17488301
Alignment:
Q  2 aaattttgatacattgaaagattattgtgactactcgttacacattcgaggaccaaaatgacggttacc 70  Q
    |||||| | ||||||||  || ||||||||||||| |||||||||||  ||| ||||||||| ||||||    
T  17488233 aaatttcgctacattgagggactattgtgactacttgttacacattcagggagcaaaatgactgttacc 17488301  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 21601972 - 21601913
Alignment:
Q  3 aattttgatacattgaaagattattgtgactactcgttacacattcgaggaccaaaatgac 63  Q
    ||||||||||||||||  || ||||||||||| | |||||| |||| ||||||||||||||    
T  21601972 aattttgatacattgatggactattgtgactatttgttacatattc-aggaccaaaatgac 21601913  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 7955190 - 7955225
Alignment:
Q  1 aaaattttgatacattgaaagattattgtgactact 36  Q
    |||||||||||||||||||| |||||||||||||||    
T  7955190 aaaattttgatacattgaaatattattgtgactact 7955225  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 19264761 - 19264822
Alignment:
Q  1 aaaattttgatacattgaaagattattgtgactactcgttacacattcgaggaccaaaatgac 63  Q
    ||||||| |||||||| | ||| ||||||||||||||||||||||||| |||||  |||||||    
T  19264761 aaaatttcgatacatt-agagactattgtgactactcgttacacattcaaggacgtaaatgac 19264822  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 48
Target Start/End: Complemental strand, 27223739 - 27223701
Alignment:
Q  10 atacattgaaagattattgtgactactcgttacacattc 48  Q
    ||||||| |||||||||||| ||||||||||||||||||    
T  27223739 atacattcaaagattattgttactactcgttacacattc 27223701  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 36
Target Start/End: Complemental strand, 29920485 - 29920451
Alignment:
Q  2 aaattttgatacattgaaagattattgtgactact 36  Q
    |||||||||||||||||| ||||||||||||||||    
T  29920485 aaattttgatacattgaaggattattgtgactact 29920451  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 48
Target Start/End: Complemental strand, 34937495 - 34937449
Alignment:
Q  2 aaattttgatacattgaaagattattgtgactactcgttacacattc 48  Q
    |||||| |||||||||||  | |||||||||||||||||||||||||    
T  34937495 aaatttggatacattgaagaactattgtgactactcgttacacattc 34937449  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 63
Target Start/End: Original strand, 516056 - 516093
Alignment:
Q  26 ttgtgactactcgttacacattcgaggaccaaaatgac 63  Q
    |||||||||||||||||||||||  |||||||||||||    
T  516056 ttgtgactactcgttacacattcagggaccaaaatgac 516093  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 48
Target Start/End: Complemental strand, 33806715 - 33806670
Alignment:
Q  3 aattttgatacattgaaagattattgtgactactcgttacacattc 48  Q
    ||||| |||||||| || ||||||||||||||||| ||||||||||    
T  33806715 aatttcgatacattaaaggattattgtgactactccttacacattc 33806670  T

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Target: scaffold0086 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 21898 - 21958
Alignment:
Q  3 aattttgatacattgaaagattattgtgactactcgttacacattcgaggaccaaaatgac 63  Q
    |||||||||| ||||||||| |||||||||||||  ||| ||||||   ||||||||||||    
T  21898 aattttgatatattgaaagactattgtgactacttcttaaacattcagagaccaaaatgac 21958  T

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