View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9755_low_9 (Length: 250)
Name: NF9755_low_9
Description: NF9755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9755_low_9 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 49 - 239
Target Start/End: Complemental strand, 120351 - 120161
Alignment:
| Q |
49 |
ggttcagcttcaaaactagctttatttgattccttttctaggtcaatgcttatgattctgttcttattgttgatgctctataccgtcacaagtacttttt |
148 |
Q |
| |
|
||||||||||||||||||| |||||||| ||| ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
120351 |
ggttcagcttcaaaactagttttatttgtttctttttctaggtcaatggttatgattctgttcgtattgttgatgctctataccgtcacaagtacttttt |
120252 |
T |
|
| Q |
149 |
gacagctttttctgggttacatcctgatgttcaaccttcctcaaacaagaccattaagaaaagtgataatacatgtagtctctctgcttct |
239 |
Q |
| |
|
||||||| | ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |
|
|
| T |
120251 |
gacagctgtgtctggtttacatcctgttgttcaaccttcctcaaacaagaccattaagaaaagtgataatacatgtagcgtctcagcttct |
120161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 99; Significance: 6e-49; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 49 - 223
Target Start/End: Complemental strand, 26179586 - 26179413
Alignment:
| Q |
49 |
ggttcagcttcaaaactagctttatttgattccttttctaggtcaatgcttatgattctgttcttattgttgatgctctataccgtcacaagtacttttt |
148 |
Q |
| |
|
||||||||||||||||||| || ||||| ||| |||||||||||||||||||||||||||||| ||| |||||||||| ||||| |||||||||| |||| |
|
|
| T |
26179586 |
ggttcagcttcaaaactagtttaatttgtttctttttctaggtcaatgcttatgattctgttcgtatcgttgatgctcaataccatcacaagtac-tttt |
26179488 |
T |
|
| Q |
149 |
gacagctttttctgggttacatcctgatgttcaaccttcctcaaacaagaccattaagaaaagtgataatacatg |
223 |
Q |
| |
|
| ||| | | ||||| |||||||||| ||||||||||| |||||||||| |||||||||||||||||||||||| |
|
|
| T |
26179487 |
ggcagttgtgtctggtttacatcctgttgttcaacctttgtcaaacaagatcattaagaaaagtgataatacatg |
26179413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University