View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9756_1 (Length: 407)
Name: NF9756_1
Description: NF9756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9756_1 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 200 - 407
Target Start/End: Complemental strand, 32217304 - 32217097
Alignment:
| Q |
200 |
ccttaccagaaggttcttcgcactaataatagtatctgtgtccatgtgggccttcacccccataaaaagatggatatggagctccaccatgctgcaacat |
299 |
Q |
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| T |
32217304 |
ccttaccagaaggttcttcgcactaataatagtatctgtgtccatgtgggccttcacccccataaaaagatggatatggagctccaccatgctgcaacat |
32217205 |
T |
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| Q |
300 |
gaatatcacaacacatcactaatattacaattatataatgtgaaaaataaaaataagttaaataacgttcactcacgtcagaagcataatagtccggcgg |
399 |
Q |
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| T |
32217204 |
gaatatcacaacacatcactaatattacaattatataatgtgaaaaataaaaataagttaaataacgttcactcacgtcagaagcataatagtccggcgg |
32217105 |
T |
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| Q |
400 |
gaactgtc |
407 |
Q |
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| T |
32217104 |
gaactgtc |
32217097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 42 - 131
Target Start/End: Complemental strand, 32217462 - 32217373
Alignment:
| Q |
42 |
gcaacttcaaagttgtgtatttgagaagcagcatgctcctaattgaagatgtcaatccgtctgttccagatccgcctaaacatatgattg |
131 |
Q |
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| T |
32217462 |
gcaacttcaaagttgtgtatttgagaagcagcatgctcctaattgaagatgtcaatccgtctgttccagatccgcctaaacatatgattg |
32217373 |
T |
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