View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9756_4 (Length: 349)
Name: NF9756_4
Description: NF9756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9756_4 |
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| [»] chr8 (7 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 264; Significance: 1e-147; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 10 - 349
Target Start/End: Complemental strand, 15076929 - 15076590
Alignment:
| Q |
10 |
attatactcccaaaatgaaccaaacagacttaccccattacaaaaactttcaaaagtttcctccaagcttaataccggtaaagatggatgttttgacctt |
109 |
Q |
| |
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||||| |||||||||||||||||| || | | |||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||||||| |
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| T |
15076929 |
attatgctcccaaaatgaaccaaatggagtaatcccattacaaaaactttcaaaagtttcctctaagcttaaaactggtaaagatggatgttttgacctt |
15076830 |
T |
|
| Q |
110 |
attttattaatgaaaatccaatatgacacaaaattatcaaatggatttctacttatataaactatcttacaattagactcttgaattgacttggcaagtg |
209 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |
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| T |
15076829 |
attttattaatgaaaatccaatatgacacaaaagtatcaaatggatttctacttatataaactatcttacaattggagtcttgaattgacttggcaagtg |
15076730 |
T |
|
| Q |
210 |
aagaaaatggaatgtgagtcccaaatatccttggttcaattatttttgatataggaatttggtccttcatatcagcagcataaagattacgttcaatgga |
309 |
Q |
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||| ||||||||||||||||||||| | ||||||||||||||||||||||| ||||||| |||| || |||||||||||||||||||||||||||||||| |
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| T |
15076729 |
aaggaaatggaatgtgagtcccaaaaagccttggttcaattatttttgatagaggaattcggtctttgatatcagcagcataaagattacgttcaatgga |
15076630 |
T |
|
| Q |
310 |
aggcactagttcatgtataatggatttaagtaatggatga |
349 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
15076629 |
aggcactagttcatgtataatggatttaagtaatggatga |
15076590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 10 - 349
Target Start/End: Original strand, 15171581 - 15171923
Alignment:
| Q |
10 |
attatactcccaaaatgaaccaaacagacttaccccattacaaaaactttcaaaagtttcctccaagcttaataccggtaaagatggatgttttgacctt |
109 |
Q |
| |
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||||| |||||||||||||||||| || | |||||||||||||||||||||||||||||||| |||||||| || | |||||||||||||||||||||| |
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| T |
15171581 |
attatgctcccaaaatgaaccaaatggagtaaccccattacaaaaactttcaaaagtttcctctaagcttaaaactgataaagatggatgttttgacctt |
15171680 |
T |
|
| Q |
110 |
attttattaatgaaaatccaatatgacacaaaattatcaaatggatttctacttatataaacta---tcttacaattagactcttgaattgacttggcaa |
206 |
Q |
| |
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|||||||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |
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| T |
15171681 |
attttattaacgaaactccaatatgacacaaaagtatcaaatggatttctacttatataaactactatcttacaattggactcttgaattgacttggcaa |
15171780 |
T |
|
| Q |
207 |
gtgaagaaaatggaatgtgagtcccaaatatccttggttcaattatttttgatataggaatttggtccttcatatcagcagcataaagattacgttcaat |
306 |
Q |
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|||||| ||||||||||||||||||||| | ||||||||||||||||||||||| ||||||| |||| || ||||||||||||||||||||||||||||| |
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| T |
15171781 |
gtgaaggaaatggaatgtgagtcccaaaaagccttggttcaattatttttgatagaggaattcggtctttgatatcagcagcataaagattacgttcaat |
15171880 |
T |
|
| Q |
307 |
ggaaggcactagttcatgtataatggatttaagtaatggatga |
349 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||| |||| |
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| T |
15171881 |
ggaaggcactagtttatgtataatggatttaagtaatgaatga |
15171923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 132 - 349
Target Start/End: Original strand, 15168868 - 15169085
Alignment:
| Q |
132 |
atgacacaaaattatcaaatggatttctacttatataaactatcttacaattagactcttgaattgacttggcaagtgaagaaaatggaatgtgagtccc |
231 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
15168868 |
atgacacaaaagtatcaaatggatttctacttatataaactatcttacaattagactcttgaatcgacttggcaagtgaagaaaatggaatgtgagtccc |
15168967 |
T |
|
| Q |
232 |
aaatatccttggttcaattatttttgatataggaatttggtccttcatatcagcagcataaagattacgttcaatggaaggcactagttcatgtataatg |
331 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
15168968 |
aaatatccttggttcaattatttttgatataggaatttggtccttcatatcagcagcataaagattacgttcaatggaaggcactagtttatgtataatg |
15169067 |
T |
|
| Q |
332 |
gatttaagtaatggatga |
349 |
Q |
| |
|
|||||||||||||||||| |
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| T |
15169068 |
gatttaagtaatggatga |
15169085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 16 - 142
Target Start/End: Original strand, 15165220 - 15165346
Alignment:
| Q |
16 |
ctcccaaaatgaaccaaacagacttaccccattacaaaaactttcaaaagtttcctccaagcttaataccggtaaagatggatgttttgaccttatttta |
115 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||||||| |
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| T |
15165220 |
ctcccaaaatgaaccaaatggagttaccccattacaaaaactttcaaaagtttcctttaagcttacaatttgtaaagatggatgttttgaccttatttta |
15165319 |
T |
|
| Q |
116 |
ttaatgaaaatccaatatgacacaaaa |
142 |
Q |
| |
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|||| |||| ||||||||||||||||| |
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| T |
15165320 |
ttaacgaaactccaatatgacacaaaa |
15165346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 17 - 260
Target Start/End: Original strand, 4506479 - 4506718
Alignment:
| Q |
17 |
tcccaaaatgaaccaaacagacttaccccattacaaaaactttcaaaagtttcctccaagcttaataccggtaaagatggatgttttgaccttattttat |
116 |
Q |
| |
|
||||||||||||||||| |||||| ||||| |||| ||||||||||| |||| || | |||||| ||||||||| ||| ||||||||||||||| |
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| T |
4506479 |
tcccaaaatgaaccaaatggacttatcccatcacaataactttcaaaaatttcatctatgcttaaagttggtaaagattgat---ttgaccttattttat |
4506575 |
T |
|
| Q |
117 |
taatgaaaatccaatatgacacaaaattatcaaatggatttctacttatataaactatcttacaattagactcttgaattgacttggcaagtgaagaaaa |
216 |
Q |
| |
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|| ||| |||| ||||||||| | ||||| |||||||||| |||||||| ||| |||||||| ||||||| |||||||||||| |||||| | || |
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| T |
4506576 |
tagcataaaaccaagcagacacaaaagtgtcaaaaggatttctacatatataaattattttacaattggactctttaattgacttggctagtgaaaagaa |
4506675 |
T |
|
| Q |
217 |
tggaatgtgagtcccaaatatccttggttcaattatttttgata |
260 |
Q |
| |
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||||| ||||| ||||| | |||||||||| | || ||||||| |
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| T |
4506676 |
tggaacatgagt-ccaaaaagccttggttcattcatgtttgata |
4506718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 110 - 260
Target Start/End: Original strand, 15214555 - 15214705
Alignment:
| Q |
110 |
attttattaatgaaaatccaatatgacacaaaattatcaaatggatttctacttatataaactatcttacaattagactcttgaattgacttggcaagtg |
209 |
Q |
| |
|
||||| || ||||||||||||||||| ||||| |||||||||| ||||||| |||||||| ||| |||||||| ||||||| || |||||||| | | |
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|
| T |
15214555 |
attttgttgatgaaaatccaatatgatacaaatgtatcaaatgggtttctacatatataaattattttacaattggactctttaactgacttgggcaacg |
15214654 |
T |
|
| Q |
210 |
aagaaaatggaatgtgagtcccaaatatccttggttcaattatttttgata |
260 |
Q |
| |
|
||| |||||| |||||||| ||||| | |||||||||| | || ||||||| |
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| T |
15214655 |
aaggaaatggcatgtgagttccaaaaagccttggttcagtcatatttgata |
15214705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 119 - 248
Target Start/End: Complemental strand, 15066876 - 15066747
Alignment:
| Q |
119 |
atgaaaatccaatatgacacaaaattatcaaatggatttctacttatataaactatcttacaattagactcttgaattgacttggcaagtgaagaaaatg |
218 |
Q |
| |
|
|||||| |||||||||| ||||| |||||||||| ||||||| |||||||| ||| |||||||| ||||||||||||||||||| | |||| ||||| |
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| T |
15066876 |
atgaaagtccaatatgatacaaatgtatcaaatgggtttctacatatataaattattttacaattggactcttgaattgacttgggcaacgaaggaaatg |
15066777 |
T |
|
| Q |
219 |
gaatgtgagtcccaaatatccttggttcaa |
248 |
Q |
| |
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| |||||||| ||| | | ||||||||||| |
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| T |
15066776 |
gcatgtgagttccataaagccttggttcaa |
15066747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 110 - 249
Target Start/End: Original strand, 1618179 - 1618318
Alignment:
| Q |
110 |
attttattaatgaaaatccaatatgacacaaaattatcaaatggatttctacttatataaactatcttacaattagactcttgaattgacttggcaagtg |
209 |
Q |
| |
|
||||| || |||||| ||||||| ||||||||| | |||||||| ||||||| ||| |||| |||||||||||| || |||| |||||||||||| || | |
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| T |
1618179 |
attttgttcatgaaattccaataagacacaaaagtgtcaaatgggtttctacatatgtaaattatcttacaattggattctttaattgacttggctagag |
1618278 |
T |
|
| Q |
210 |
aagaaaatggaatgtgagtcccaaatatccttggttcaat |
249 |
Q |
| |
|
||| ||| ||||| ||||| ||||| | |||||||||||| |
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|
| T |
1618279 |
aagtaaaaggaatatgagttccaaaaagccttggttcaat |
1618318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 110 - 249
Target Start/End: Original strand, 1626744 - 1626883
Alignment:
| Q |
110 |
attttattaatgaaaatccaatatgacacaaaattatcaaatggatttctacttatataaactatcttacaattagactcttgaattgacttggcaagtg |
209 |
Q |
| |
|
||||| || |||||| ||||||| ||||||||| | |||||||| || |||| ||| |||| |||||||||||| ||||||| ||| |||||||| || | |
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| T |
1626744 |
attttgttcatgaaattccaataagacacaaaagtgtcaaatgggttcctacatatgtaaattatcttacaattggactctttaatagacttggctagag |
1626843 |
T |
|
| Q |
210 |
aagaaaatggaatgtgagtcccaaatatccttggttcaat |
249 |
Q |
| |
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|| || ||||||||||| ||||| |||||||||||||| |
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| T |
1626844 |
aatggaaaggaatgtgagttccaaaaatccttggttcaat |
1626883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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