View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9756_5 (Length: 334)

Name: NF9756_5
Description: NF9756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9756_5
NF9756_5
[»] chr3 (11 HSPs)
chr3 (162-329)||(4781162-4781327)
chr3 (163-329)||(4776532-4776696)
chr3 (177-329)||(4771804-4771954)
chr3 (188-329)||(3257786-3257927)
chr3 (212-326)||(32201992-32202107)
chr3 (188-329)||(3256570-3256712)
chr3 (213-327)||(33798264-33798380)
chr3 (213-313)||(16217346-16217446)
chr3 (188-314)||(3285322-3285449)
chr3 (240-329)||(3404164-3404254)
chr3 (229-329)||(3388484-3388585)
[»] chr4 (9 HSPs)
chr4 (163-322)||(7703203-7703363)
chr4 (165-313)||(11488459-11488607)
chr4 (187-326)||(8913117-8913257)
chr4 (258-326)||(30064930-30064998)
chr4 (187-330)||(41953566-41953711)
chr4 (195-330)||(20572200-20572336)
chr4 (213-325)||(21799028-21799143)
chr4 (197-330)||(51462266-51462399)
chr4 (162-238)||(19940193-19940268)
[»] chr5 (4 HSPs)
chr5 (58-157)||(8682744-8682843)
chr5 (195-322)||(24884282-24884409)
chr5 (187-316)||(13808125-13808256)
chr5 (198-273)||(16511852-16511929)
[»] chr7 (10 HSPs)
chr7 (213-323)||(5048480-5048590)
chr7 (162-314)||(40504470-40504623)
chr7 (163-330)||(16254013-16254181)
chr7 (195-324)||(7229334-7229465)
chr7 (213-303)||(16300354-16300444)
chr7 (203-268)||(20176345-20176410)
chr7 (163-221)||(16299584-16299642)
chr7 (195-245)||(19589834-19589884)
chr7 (195-240)||(2475814-2475859)
chr7 (290-329)||(18398133-18398173)
[»] chr2 (8 HSPs)
chr2 (212-325)||(5370754-5370869)
chr2 (162-312)||(30972913-30973063)
chr2 (195-302)||(24576705-24576813)
chr2 (197-330)||(33855131-33855265)
chr2 (162-268)||(16341478-16341583)
chr2 (192-253)||(25894209-25894270)
chr2 (164-221)||(17270469-17270526)
chr2 (162-264)||(13232016-13232118)
[»] chr6 (2 HSPs)
chr6 (182-330)||(21671024-21671172)
chr6 (182-330)||(21678440-21678588)
[»] chr8 (2 HSPs)
chr8 (189-295)||(15257383-15257488)
chr8 (186-258)||(25234454-25234526)
[»] chr1 (3 HSPs)
chr1 (195-330)||(19882278-19882409)
chr1 (191-240)||(15245068-15245117)
chr1 (195-240)||(33079573-33079618)


Alignment Details
Target: chr3 (Bit Score: 117; Significance: 1e-59; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 162 - 329
Target Start/End: Complemental strand, 4781327 - 4781162
Alignment:
Q  162 ctgtggagttatagtttcgcgtagtttttcagcagaaaacctgtttgcataaaaataaaataaattatttgtcacaacagtaaatataaaaggttaagtt 261  Q
    |||||||| || || | ||||||| ||||||||||||||| ||||| ||||||  |||||||||| ||||||||||||||||||||||||||||||||||    
T  4781327 ctgtggagctaaagctacgcgtagattttcagcagaaaacttgtttacataaa--taaaataaatcatttgtcacaacagtaaatataaaaggttaagtt 4781230  T
Q  262 tgggaaagcagtaaaaggttttagaaaatctcaagatggaaagtgtggtttaaactaggttcagttat 329  Q
    ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  4781229 tgggaaagcagtaaaaggttttagaaaatctaaagatggaaagtctggtttaaactaggttcagttat 4781162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 163 - 329
Target Start/End: Complemental strand, 4776696 - 4776532
Alignment:
Q  163 tgtggagttatagtttcgcgtagtttttcagcagaaaacctgtttgcataaaaataaaataaattatttgtcacaacagtaaatataaaaggttaagttt 262  Q
    ||||||| || || |||| |||| | ||||| ||||||| ||||| ||||||  |||||| ||| |||||||||||||||||||||||||| ||||||||    
T  4776696 tgtggagctaaagcttcgtgtagctgttcagtagaaaacatgtttacataaa--taaaatgaatcatttgtcacaacagtaaatataaaagattaagttt 4776599  T
Q  263 gggaaagcagtaaaaggttttagaaaatctcaagatggaaagtgtggtttaaactaggttcagttat 329  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  4776598 gggaaagcagtaaaaggttttagaaaatctcaagatggaaagtctggtttaaactaggtccagttat 4776532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 177 - 329
Target Start/End: Complemental strand, 4771954 - 4771804
Alignment:
Q  177 ttcgcgtagtttttcagcagaaaacctgtttgcataaaaataaaataaattatttgtcacaacagtaaatataaaaggttaagtttgggaaagcagtaaa 276  Q
    |||| |||| ||||||| ||||||| ||||| ||||||  |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  4771954 ttcgagtagcttttcagtagaaaacttgtttacataaa--taaaataaatcatttgtcacaacagtaaatataaaaggttaagtttgggaaagaagtaaa 4771857  T
Q  277 aggttttagaaaatctcaagatggaaagtgtggtttaaactaggttcagttat 329  Q
    |||||||||||||||||||||||||||||  |||||||| ||||||| |||||    
T  4771856 aggttttagaaaatctcaagatggaaagtacggtttaaattaggttcggttat 4771804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 188 - 329
Target Start/End: Complemental strand, 3257927 - 3257786
Alignment:
Q  188 tttcagcagaaaacctgtttgcataaaaataaaataaattatttgtcacaacagtaaatataaaaggttaagtttgggaaagcagtaaaaggttttagaa 287  Q
    |||||||||||||| ||||||||  ||||| ||||||||  |||||| ||| ||||||||||||| ||||||||| |||||  ||| ||| | |||||||    
T  3257927 tttcagcagaaaacatgtttgcaggaaaatcaaataaatattttgtcgcaatagtaaatataaaatgttaagttttggaaaatagttaaaaggtttagaa 3257828  T
Q  288 aatctcaagatggaaagtgtggtttaaactaggttcagttat 329  Q
    | ||| ||||||||||||||||||||| ||||| ||||||||    
T  3257827 attcttaagatggaaagtgtggtttaagctaggctcagttat 3257786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 212 - 326
Target Start/End: Original strand, 32201992 - 32202107
Alignment:
Q  212 aaaaataaaataaattatttgtcacaacagtaaatataaaaggttaagtttgggaaagcagtaaaaggttttagaaaatctcaagatggaaagtgtggtt 311  Q
    ||||||||||||||| ||||||| ||||||||||  ||||| ||| ||||| |||||||||| ||||  |||||||||||||||||||||| ||||||||    
T  32201992 aaaaataaaataaatcatttgtcgcaacagtaaaattaaaaagtttagtttaggaaagcagttaaagtctttagaaaatctcaagatggaaggtgtggtt 32202091  T
Q  312 ta-aactaggttcagt 326  Q
    || ||| |||||||||    
T  32202092 tagaacaaggttcagt 32202107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 188 - 329
Target Start/End: Complemental strand, 3256712 - 3256570
Alignment:
Q  188 tttcagcagaaaacctgtttgcataaaaataaaataaattatttgtcacaacagtaaatataaaaggttaagtttgggaaagcag-taaaaggttttaga 286  Q
    ||||| || ||||| ||||||||  ||||| ||||||||  |||| |||||| |||||| ||||||||||||||| ||||| ||| ||||| | ||||||    
T  3256712 tttcaacataaaacttgtttgcaagaaaatcaaataaatcttttgccacaacggtaaatctaaaaggttaagttttggaaaacagttaaaatgatttaga 3256613  T
Q  287 aaatctcaagatggaaagtgtggtttaaactaggttcagttat 329  Q
    || |||  |||||||||||||||||||| ||||||||||||||    
T  3256612 aattctttagatggaaagtgtggtttaagctaggttcagttat 3256570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 213 - 327
Target Start/End: Complemental strand, 33798380 - 33798264
Alignment:
Q  213 aaaataaaataaattatttgtcacaacagtaaatataaaaggttaa-gtttgggaaagcagt--aaaaggttttagaaaatctcaagatggaaagtgtgg 309  Q
    |||||||||||||| |||||||||||||  |||||||||| ||||| | |||||||| || |  ||||||||| ||||| |||||||||||||| |||||    
T  33798380 aaaataaaataaatcatttgtcacaacaacaaatataaaaagttaaaggttgggaaaacaatttaaaaggttt-agaaattctcaagatggaaaatgtgg 33798282  T
Q  310 tttaaactaggttcagtt 327  Q
    ||||||||||||||||||    
T  33798281 tttaaactaggttcagtt 33798264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 213 - 313
Target Start/End: Original strand, 16217346 - 16217446
Alignment:
Q  213 aaaataaaataaattatttgtcacaacagtaaatataaaaggttaagtttgggaaagcagtaaaaggttttagaaaatctcaagatggaaagtgtggttt 312  Q
    ||||||||||||| ||||| |||||||||||||  | ||| ||||| |||||||||||||| ||||  |||||||||||||||||||||| ||| |||||    
T  16217346 aaaataaaataaaatatttttcacaacagtaaaagtgaaaagttaaatttgggaaagcagttaaagtctttagaaaatctcaagatggaaggtgcggttt 16217445  T
Q  313 a 313  Q
    |    
T  16217446 a 16217446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 188 - 314
Target Start/End: Complemental strand, 3285449 - 3285322
Alignment:
Q  188 tttcagcagaaaacctgtttgcataaaaataaaataaattatttgtcacaacagtaaatataaaaggttaagtttgggaaagcag-taaaaggttttaga 286  Q
    |||||||| ||||| |||||| |  ||||| ||||||||  |||||  ||| ||||||||||||||||||||||| ||||| ||| ||||| | ||||||    
T  3285449 tttcagcataaaacttgtttgtaggaaaatcaaataaatcttttgttgcaatagtaaatataaaaggttaagttttggaaaacagttaaaaagatttaga 3285350  T
Q  287 aaatctcaagatggaaagtgtggtttaa 314  Q
    || ||| |||||||||||||||||||||    
T  3285349 aattcttaagatggaaagtgtggtttaa 3285322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 240 - 329
Target Start/End: Complemental strand, 3404254 - 3404164
Alignment:
Q  240 agtaaatataaaaggttaagtttgggaaagcagt-aaaaggttttagaaaatctcaagatggaaagtgtggtttaaactaggttcagttat 329  Q
    |||||||||||||||||| |||| ||||| |||| |||| | |||| ||| |||||||||| |||||||||||||||||| ||||||||||    
T  3404254 agtaaatataaaaggttatgttttggaaaacagttaaaaagatttacaaattctcaagatgaaaagtgtggtttaaactaagttcagttat 3404164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 229 - 329
Target Start/End: Complemental strand, 3388585 - 3388484
Alignment:
Q  229 tttgtcacaacagtaaatataaaaggttaagtttgggaaagcagt-aaaaggttttagaaaatctcaagatggaaagtgtggtttaaactaggttcagtt 327  Q
    |||||||||||||||||| ||| |||||| |||| ||||| |||| |||| | |||| ||| |||||||||| |||||||||||||||||| ||||| ||    
T  3388585 tttgtcacaacagtaaatctaataggttatgttttggaaaacagttaaaaagatttacaaattctcaagatgaaaagtgtggtttaaactaagttcaatt 3388486  T
Q  328 at 329  Q
    ||    
T  3388485 at 3388484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 93; Significance: 3e-45; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 163 - 322
Target Start/End: Complemental strand, 7703363 - 7703203
Alignment:
Q  163 tgtggagttatagtttcgcgtagtttttcagcagaaaacctgtttgcataaaaataaaataaattatttgtcacaacagtaaatataaaa-ggttaagtt 261  Q
    ||||||| ||||| |||| |||| ||||||| ||||| | |||||| |  |||||||||||| | ||||||||||||||||||||||||| |||||||||    
T  7703363 tgtggagctatagcttcgtgtagcttttcaggagaaagcttgtttgtacgaaaataaaataagtcatttgtcacaacagtaaatataaaaaggttaagtt 7703264  T
Q  262 tgggaaagcagtaaaaggttttagaaaatctcaagatggaaagtgtggtttaaactaggtt 322  Q
    ||||||| |||||||||||||||||||||||||||||||||| |||| |||||||||||||    
T  7703263 tgggaaaccagtaaaaggttttagaaaatctcaagatggaaattgtgttttaaactaggtt 7703203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 165 - 313
Target Start/End: Original strand, 11488459 - 11488607
Alignment:
Q  165 tggagttatagtttcgcgtagtttttcagcagaaaacctgtttgcataaaaataaaataaattatttgtcacaacagtaaatataaaaggttaagtttgg 264  Q
    ||||| ||||| ||||||||  |||| |||| ||||| |||||| | ||||||||||||||  |||||| |||||| |||| ||||||||||||||||||    
T  11488459 tggagctatagcttcgcgtacctttttagcaaaaaacttgtttgtagaaaaataaaataaaacatttgttacaacaataaacataaaaggttaagtttgg 11488558  T
Q  265 gaaagcagtaaaaggttttagaaaatctcaagatggaaagtgtggttta 313  Q
    ||||| ||| ||||    | |||||||||||||||||||| ||||||||    
T  11488559 gaaagaagttaaagtccatcgaaaatctcaagatggaaagcgtggttta 11488607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 187 - 326
Target Start/End: Complemental strand, 8913257 - 8913117
Alignment:
Q  187 ttttcagcagaaaacctgtttgcataaaaataaaataaattatttgtcacaacagtaaatataaaaggttaagtttgggaaagcagtaaaaggttttaga 286  Q
    ||||||||||||||| ||| ||   || |||||||||||  ||||||| ||| ||||||  ||||| |||||| || |||||||||| ||||   |||||    
T  8913257 ttttcagcagaaaacttgtgtggtgaagaataaaataaaacatttgtcgcaatagtaaaagtaaaaagttaagcttaggaaagcagttaaagtccttaga 8913158  T
Q  287 aaatctcaagatggaaagtgtggttta-aactaggttcagt 326  Q
    |||||||||||||||| |||||||||| ||| |||||||||    
T  8913157 aaatctcaagatggaaggtgtggtttagaacaaggttcagt 8913117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 258 - 326
Target Start/End: Original strand, 30064930 - 30064998
Alignment:
Q  258 agtttgggaaagcagtaaaaggttttagaaaatctcaagatggaaagtgtggtttaaactaggttcagt 326  Q
    ||||||| ||| |||||||| |||||| ||||||||||||| |||||||||||||||||||||||||||    
T  30064930 agtttggaaaaacagtaaaaagttttaaaaaatctcaagattgaaagtgtggtttaaactaggttcagt 30064998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 187 - 330
Target Start/End: Original strand, 41953566 - 41953711
Alignment:
Q  187 ttttcagcagaaaacctgtttgcataaaaataaaataaattatttgtcacaacagtaaatataaaaggttaagtttgggaaagcagtaaa--aggtttta 284  Q
    ||||||| ||||||| | ||||||  |||||||||||||| |||||||||||||||||||||||||| | |||  |||||||||| | ||     |||||    
T  41953566 ttttcagtagaaaacttatttgcaagaaaataaaataaatcatttgtcacaacagtaaatataaaagttaaaggctgggaaagcaattaattttttttta 41953665  T
Q  285 gaaaatctcaagatggaaagtgtggtttaaactaggttcagttatg 330  Q
    || | ||||||  || |||||||||||||||||| ||| |||||||    
T  41953666 gatattctcaaagtgaaaagtgtggtttaaactaagtttagttatg 41953711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 195 - 330
Target Start/End: Complemental strand, 20572336 - 20572200
Alignment:
Q  195 agaaaacctgtttgcataaaaataaaataaattatttgtcacaacagtaaatataaaaggttaagtttgggaaagc-agtaaaaggttttagaaaatctc 293  Q
    ||||||| ||||||||  |||||||||||||| |||||||||||| ||||||||||||| | |||  ||| ||| | | ||||| | |||||||| | ||    
T  20572336 agaaaacttgtttgcaagaaaataaaataaatcatttgtcacaaccgtaaatataaaagttgaaggctggaaaaacaattaaaacgatttagaaattatc 20572237  T
Q  294 aagatggaaagtgtggtttaaactaggttcagttatg 330  Q
    ||  || |||||||||||||||||| ||| |||||||    
T  20572236 aaagtgaaaagtgtggtttaaactatgttaagttatg 20572200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 213 - 325
Target Start/End: Complemental strand, 21799143 - 21799028
Alignment:
Q  213 aaaataaaataaattatttgtcacaacagtaaatataaaaggtt-aagtttggg--aaagcagtaaaaggttttagaaaatctcaagatggaaagtgtgg 309  Q
    |||||||||||||| ||||||||||| ||||||||||||| ||| ||| |||||  ||| |||| |||    ||||||| |||||||||| |||||||||    
T  21799143 aaaataaaataaatcatttgtcacaatagtaaatataaaaagttaaaggttggggaaaaacagtgaaaaagattagaaattctcaagatgaaaagtgtgg 21799044  T
Q  310 tttaaactaggttcag 325  Q
    ||||||||| ||||||    
T  21799043 tttaaactacgttcag 21799028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 197 - 330
Target Start/End: Complemental strand, 51462399 - 51462266
Alignment:
Q  197 aaaacctgtttgcataaaaataaaataaattatttgtcacaacagtaaatataaaaggttaagtttgggaaagcagtaaaaggttttagaaaatctcaag 296  Q
    ||||| |||||||| ||||||||||||||| || | |||| |||||||||||||||| | ||| |||| |||    ||||| | |||||| | ||||||     
T  51462399 aaaacttgtttgcaaaaaaataaaataaatcatctatcacgacagtaaatataaaagttaaaggttggaaaaattttaaaaagatttagatattctcaac 51462300  T
Q  297 atggaaagtgtggtttaaactaggttcagttatg 330  Q
     || |||||||||||||||||| ||||| |||||    
T  51462299 gtgaaaagtgtggtttaaactaagttcaattatg 51462266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 238
Target Start/End: Original strand, 19940193 - 19940268
Alignment:
Q  162 ctgtggagttatagtttcgcgtagtttttcagcagaaaacctgtttgcataaaaataaaataaattatttgtcacaa 238  Q
    |||||||| ||||| |||   ||||||||||| ||||||| ||||| || ||||||||||||||| |||||||||||    
T  19940193 ctgtggagctatagcttcctatagtttttcagtagaaaacttgtttaca-aaaaataaaataaatcatttgtcacaa 19940268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 92; Significance: 1e-44; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 58 - 157
Target Start/End: Original strand, 8682744 - 8682843
Alignment:
Q  58 gtgatgacaacaaaacggccaatgaaggcggtggtaaaaatgcaggtggtggcacaaaagtagaggaagtgaagccagcaccacagccagtgaacgagca 157  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||    
T  8682744 gtgatgacaacaaaacggccaatgaaggcggtggtaaaaatgcaggtggtggctcaaaagtagaggaagtgaagccagcaccacagccagtgaaagagca 8682843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 195 - 322
Target Start/End: Original strand, 24884282 - 24884409
Alignment:
Q  195 agaaaacctgtttgcataaaaataaaataaattatttgtcacaacagtaaatataaaaggttaagtttgggaaagcagtaaaaggttttagaaaatctca 294  Q
    ||||||| | |||| | ||||||||||||||| ||||||||||||| ||||  |||||| |||||||| |||||||||| ||||  ||||||||||||||    
T  24884282 agaaaacttatttggagaaaaataaaataaataatttgtcacaacaataaaagtaaaag-ttaagtttaggaaagcagttaaagtctttagaaaatctca 24884380  T
Q  295 agatggaaagtgtggttta-aactaggtt 322  Q
    ||||||||  ||||||||| |||||||||    
T  24884381 agatggaagatgtggtttagaactaggtt 24884409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 187 - 316
Target Start/End: Original strand, 13808125 - 13808256
Alignment:
Q  187 ttttcagcagaaaacctgtttgcataaaaataaaataaattatttgtcacaacagtaaa-tataaaaggttaagtttgggaaagcag-taaaaggtttta 284  Q
    ||||||| ||||||| ||||||||  |||||||||||||| ||||||||||||| |||| |||||||| ||||||||||||||  || ||||| | | ||    
T  13808125 ttttcagtagaaaacttgtttgcaacaaaataaaataaatcatttgtcacaacactaaagtataaaagtttaagtttgggaaaatagttaaaatgatcta 13808224  T
Q  285 gaaaatctcaagatggaaagtgtggtttaaac 316  Q
    |||| |||||| |||||||| |||||||||||    
T  13808225 gaaattctcaacatggaaagcgtggtttaaac 13808256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 198 - 273
Target Start/End: Complemental strand, 16511929 - 16511852
Alignment:
Q  198 aaacctgtttgcataaaaataaaataaattatttgtcacaacagtaaatataaaaggttaa--gtttgggaaagcagt 273  Q
    |||| ||||||||  |||||||||||||| ||||||||||||| |||| |||||| |||||  |||||||||| ||||    
T  16511929 aaacttgtttgcaagaaaataaaataaatcatttgtcacaacaataaaaataaaaagttaaaggtttgggaaaacagt 16511852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 7e-37; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 213 - 323
Target Start/End: Original strand, 5048480 - 5048590
Alignment:
Q  213 aaaataaaataaattatttgtcacaacagtaaatataaaaggttaagtttgggaaagcagtaaaaggttttagaaaatctcaagatggaaagtgtggttt 312  Q
    |||||||||||||| | |||| |||||||||||||||||||||| |||||||||||||| |||||||||||| |||||||||||| | ||||||||||||    
T  5048480 aaaataaaataaatcacttgttacaacagtaaatataaaaggttgagtttgggaaagcaataaaaggttttaaaaaatctcaagaggtaaagtgtggttt 5048579  T
Q  313 aaactaggttc 323  Q
    |||||||||||    
T  5048580 aaactaggttc 5048590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 162 - 314
Target Start/End: Original strand, 40504470 - 40504623
Alignment:
Q  162 ctgtggagttatagtttcgcgtagtttttcagcagaaaacctgtttgcataaaaataaaataaattatttgtcacaacagtaaatataaaaggttaag-t 260  Q
    |||||||| ||||| ||||| ||| ||||||||||||||| |||||| |  |||||||||||||  ||||||||||||| ||||  |||||||||||| |    
T  40504470 ctgtggagctatagcttcgcatagcttttcagcagaaaacttgtttgtaagaaaataaaataaaacatttgtcacaacaataaaagtaaaaggttaagtt 40504569  T
Q  261 ttgggaaagcagtaaaaggttttagaaaatctcaagatggaaagtgtggtttaa 314  Q
    |||||||| |||    ||  ||||||||||||||||||| ||||||||||||||    
T  40504570 ttgggaaaacagctgcagtctttagaaaatctcaagatgaaaagtgtggtttaa 40504623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 163 - 330
Target Start/End: Complemental strand, 16254181 - 16254013
Alignment:
Q  163 tgtggagttatagtttcgcgtagtttttcagcagaaaacctgtttgcataaaaataaaataaattatttgtcacaacagtaaatataaaaggttaagttt 262  Q
    ||||||| ||||| |  |||||| |||||| | |||||| ||||||   |||||||||||||| |||||||||||||| ||||  |||||||||||||||    
T  16254181 tgtggagctatagctctgcgtagcttttcaacggaaaacttgtttggtaaaaaataaaataaaatatttgtcacaacattaaaagtaaaaggttaagttt 16254082  T
Q  263 gggaaagcagtaaaaggttttagaaaatctcaagatggaaagtgtggttta-aactaggttcagttatg 330  Q
     |||| ||||| ||||  ||||||||||||||||||| ||| ||| ||||| | |||||||||| ||||    
T  16254081 cggaatgcagttaaagtctttagaaaatctcaagatgaaaattgtagtttagatctaggttcagctatg 16254013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 195 - 324
Target Start/End: Complemental strand, 7229465 - 7229334
Alignment:
Q  195 agaaaacctgtttgcataaaaataaaataaattatttgtcacaacagtaaatataaaaggtt-aagtttgggaaagc-agtaaaaggttttagaaaatct 292  Q
    ||||||| ||||| ||  |||||||||||||| ||||||||||||||||||||||||| ||| ||| |||||||| | | ||||| |  ||||||| |||    
T  7229465 agaaaacttgtttccaagaaaataaaataaatcatttgtcacaacagtaaatataaaaagttaaaggttgggaaaacaattaaaaagacttagaaattct 7229366  T
Q  293 caagatggaaagtgtggtttaaactaggttca 324  Q
    |||| |  |||||||||||||||||| |||||    
T  7229365 caaggtaaaaagtgtggtttaaactaagttca 7229334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 213 - 303
Target Start/End: Original strand, 16300354 - 16300444
Alignment:
Q  213 aaaataaaataaattatttgtcacaacagtaaatataaaaggttaagtttgggaaagcagtaaaaggttttagaaaatctcaagatggaaa 303  Q
    ||||| |||||||  ||||||||||||| ||||  |||||||||||||||| ||||||||| ||||  |||||||||| | ||||||||||    
T  16300354 aaaatgaaataaaacatttgtcacaacattaaaagtaaaaggttaagtttgagaaagcagttaaagtctttagaaaatttgaagatggaaa 16300444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 203 - 268
Target Start/End: Complemental strand, 20176410 - 20176345
Alignment:
Q  203 tgtttgcataaaaataaaataaattatttgtcacaacagtaaatataaaaggttaagtttgggaaa 268  Q
    ||||||||  ||||| ||| |||| |||| |||||||||||||||||||||||||| |||||||||    
T  20176410 tgtttgcaagaaaattaaaaaaatcatttatcacaacagtaaatataaaaggttaattttgggaaa 20176345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 221
Target Start/End: Original strand, 16299584 - 16299642
Alignment:
Q  163 tgtggagttatagtttcgcgtagtttttcagcagaaaacctgtttgcataaaaataaaa 221  Q
    ||||||| || || ||||||||| ||||||||||||||| |||||| | ||||||||||    
T  16299584 tgtggagctacagcttcgcgtagcttttcagcagaaaacttgtttggagaaaaataaaa 16299642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 245
Target Start/End: Complemental strand, 19589884 - 19589834
Alignment:
Q  195 agaaaacctgtttgcataaaaataaaataaattatttgtcacaacagtaaa 245  Q
    ||||||| |||||||| ||||||| ||||||| ||||||||||||| ||||    
T  19589884 agaaaacttgtttgcaaaaaaatagaataaatcatttgtcacaacaataaa 19589834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 240
Target Start/End: Original strand, 2475814 - 2475859
Alignment:
Q  195 agaaaacctgtttgcataaaaataaaataaattatttgtcacaaca 240  Q
    ||||||| |||||| | ||||||||||||||| |||||||||||||    
T  2475814 agaaaacttgtttgtaaaaaaataaaataaatcatttgtcacaaca 2475859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 329
Target Start/End: Original strand, 18398133 - 18398173
Alignment:
Q  290 tctcaagatggaaagtgtggttt-aaactaggttcagttat 329  Q
    |||||||||||||| |||||||| |||||||||||||||||    
T  18398133 tctcaagatggaaattgtggtttaaaactaggttcagttat 18398173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 212 - 325
Target Start/End: Complemental strand, 5370869 - 5370754
Alignment:
Q  212 aaaaataaaataaattatttgtcacaacagtaaatataaaaggttaagttt-gggaaagcagt-aaaaggttttagaaaatctcaagatggaaagtgtgg 309  Q
    ||||| |||| |||| ||||||||||||| ||||||||||||||||||||| |||||| |||| |||| | |||||||| ||||||||||||||||||||    
T  5370869 aaaaaaaaaaaaaatcatttgtcacaacaataaatataaaaggttaagttttgggaaaacagttaaaaagatttagaaattctcaagatggaaagtgtgg 5370770  T
Q  310 tttaaactaggttcag 325  Q
    ||||||||||||||||    
T  5370769 tttaaactaggttcag 5370754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 162 - 312
Target Start/End: Complemental strand, 30973063 - 30972913
Alignment:
Q  162 ctgtggagttatagtttcgcgtagtttttcagcagaaaacctgtttgcataaaaataaaataaattatttgtcacaacagtaaatataaaaggttaagtt 261  Q
    |||||||| ||| | || |||||| ||||| ||||||||| |||||| | |||||||||||| |  |||| |||||||| ||||  ||||||||||||||    
T  30973063 ctgtggagctatggctttgcgtagcttttctgcagaaaacatgtttggagaaaaataaaatataacatttttcacaacaataaaagtaaaaggttaagtt 30972964  T
Q  262 tgggaaagcagtaaaaggttttagaaaatctcaagatggaaagtgtggttt 312  Q
    ||||||| |||| ||||  ||||||||||||||||||| ||||||||||||    
T  30972963 tgggaaaacagttaaagtctttagaaaatctcaagatgaaaagtgtggttt 30972913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 195 - 302
Target Start/End: Complemental strand, 24576813 - 24576705
Alignment:
Q  195 agaaaacctgtttgcataaaaataaaataaattatttgtcacaacagtaaatataaaaggttaagtttgggaaagc-agtaaaaggttttagaaaatctc 293  Q
    ||||||| ||||||||  ||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||| | | ||||| | |||||||| ||||    
T  24576813 agaaaacttgtttgcaagaaagtaaaataaattatttgtcacaacaataaatgtaaaaggttaagtttgggaaaacaattaaaacgatttagaaattctc 24576714  T
Q  294 aagatggaa 302  Q
    |||||||||    
T  24576713 aagatggaa 24576705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 197 - 330
Target Start/End: Original strand, 33855131 - 33855265
Alignment:
Q  197 aaaacctgtttgcataaaaataaaataaattatttgtcacaacagtaaatataaaaggttaagtttgggaaagc-agtaaaaggttttagaaaatctcaa 295  Q
    ||||| ||||||||  ||||||||| |||| |||||||||||||||||||||||||| | ||| |||||||| | | ||||| | |||||||| ||||||    
T  33855131 aaaacttgtttgcaagaaaataaaaaaaatcatttgtcacaacagtaaatataaaagttaaaggttgggaaaacaattaaaaagatttagaaattctcaa 33855230  T
Q  296 gatggaaagtgtggtttaaactaggttcagttatg 330  Q
      || |||||||||||||||||| |||| ||||||    
T  33855231 agtgaaaagtgtggtttaaactaagttcggttatg 33855265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 162 - 268
Target Start/End: Original strand, 16341478 - 16341583
Alignment:
Q  162 ctgtggagttatagtttcgcgtagtttttcagcagaaaacctgtttgcataaaaataaaataaattatttgtcacaacagtaaatataaaaggttaagtt 261  Q
    |||||||| ||||| |||| |||| ||||| ||||||||| ||||||||  |||||| ||| ||  |||| ||||||||| ||||||||||||||| |||    
T  16341478 ctgtggagctatagcttcgtgtagcttttctgcagaaaacgtgtttgcaataaaatataattaaacatttctcacaacag-aaatataaaaggttaggtt 16341576  T
Q  262 tgggaaa 268  Q
    |||||||    
T  16341577 tgggaaa 16341583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 192 - 253
Target Start/End: Original strand, 25894209 - 25894270
Alignment:
Q  192 agcagaaaacctgtttgcataaaaataaaataaattatttgtcacaacagtaaatataaaag 253  Q
    |||||||||| |||||| |  |||||||||||||| |||||||||||||||||| |||||||    
T  25894209 agcagaaaacttgtttgtaagaaaataaaataaatcatttgtcacaacagtaaaaataaaag 25894270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 164 - 221
Target Start/End: Complemental strand, 17270526 - 17270469
Alignment:
Q  164 gtggagttatagtttcgcgtagtttttcagcagaaaacctgtttgcataaaaataaaa 221  Q
    |||||| ||||||||||||||| |||| ||||  |||| |||||||||||||||||||    
T  17270526 gtggagctatagtttcgcgtagctttttagcatgaaacttgtttgcataaaaataaaa 17270469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 264
Target Start/End: Original strand, 13232016 - 13232118
Alignment:
Q  162 ctgtggagttatagtttcgcgtagtttttcagcagaaaacctgtttgcataaaaataaaataaattatttgtcacaacagtaaatataaaaggttaagtt 261  Q
    |||||||| ||||||| ||||||| | ||||  ||||||  | |||| || |||||||| ||||| ||||| ||  | | ||||||||||||||||||||    
T  13232016 ctgtggagctatagttccgcgtagctcttcaatagaaaatttatttgaatgaaaataaagtaaatcatttggcattataataaatataaaaggttaagtt 13232115  T
Q  262 tgg 264  Q
    |||    
T  13232116 tgg 13232118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 182 - 330
Target Start/End: Original strand, 21671024 - 21671172
Alignment:
Q  182 gtagtttttcagcagaaaacctgtttgcataaaaataaaataaattatttgtcacaacagtaaatataaaaggttaagtttgggaaagcagta-aaaggt 280  Q
    |||| ||||||||| ||||| |||||| |  |||||||||||||| ||||||| ||||| ||||| ||||| |||||||| |||||| ||||  ||| |     
T  21671024 gtagcttttcagcataaaacttgtttgtaagaaaataaaataaatcatttgtcccaacaataaatctaaaaagttaagtt-gggaaaacagtttaaaaga 21671122  T
Q  281 tttagaaaatctcaagatggaaagtgtggtttaaactaggttcagttatg 330  Q
    |||||||| ||||||||||||||||||||||||||||| |||||||||||    
T  21671123 tttagaaattctcaagatggaaagtgtggtttaaactaagttcagttatg 21671172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 182 - 330
Target Start/End: Original strand, 21678440 - 21678588
Alignment:
Q  182 gtagtttttcagcagaaaacctgtttgcataaaaataaaataaattatttgtcacaacagtaaatataaaaggttaagtttgggaaagcagta-aaaggt 280  Q
    |||| ||||||||| ||||| |||||| |  |||||||||||||| ||||||| ||||| ||||| ||||| |||||||| || ||| ||||  ||| |     
T  21678440 gtagcttttcagcataaaacttgtttgtaagaaaataaaataaatcatttgtcccaacaataaatctaaaaagttaagtt-ggaaaaacagtttaaaaga 21678538  T
Q  281 tttagaaaatctcaagatggaaagtgtggtttaaactaggttcagttatg 330  Q
    |||||||| ||||||||||||||||||||||||||||| |||||||||||    
T  21678539 tttagaaattctcaagatggaaagtgtggtttaaactaagttcagttatg 21678588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 189 - 295
Target Start/End: Original strand, 15257383 - 15257488
Alignment:
Q  189 ttcagcagaaaacctgtttgcataaaaataaaataaattatttgtcacaacagtaaatataaaaggttaagtttgggaaagcagtaaaaggttttagaaa 288  Q
    ||||||||||||| | |||| | ||||||||||||||  |||||||||| |||||||  ||||| ||||||||||| |||| ||| ||||  ||||||||    
T  15257383 ttcagcagaaaacttatttggaaaaaaataaaataaaacatttgtcaca-cagtaaaagtaaaaagttaagtttggcaaagtagttaaagtctttagaaa 15257481  T
Q  289 atctcaa 295  Q
    |||||||    
T  15257482 atctcaa 15257488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 186 - 258
Target Start/End: Complemental strand, 25234526 - 25234454
Alignment:
Q  186 tttttcagcagaaaacctgtttgcataaaaataaaataaattatttgtcacaacagtaaatataaaaggttaa 258  Q
    |||| ||| ||||||| ||||||||  |||||||||||||| |||| | |||||| |||||||||||||||||    
T  25234526 ttttccagtagaaaacttgtttgcaagaaaataaaataaatcattttttacaacaataaatataaaaggttaa 25234454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 330
Target Start/End: Original strand, 19882278 - 19882409
Alignment:
Q  195 agaaaacctgtttgcataaaaataaaataaattatttgtcacaacagtaaatataaaaggttaagtttgggaaagcagt-aaaaggttttagaaaatctc 293  Q
    ||||||| | ||||||  || ||||| ||||| ||||||||||||||||||     ||||||||||||||| |  || | |||| | |||| ||| ||||    
T  19882278 agaaaacttatttgcaagaatataaagtaaatcatttgtcacaacagtaaa-----aaggttaagtttggggatacaattaaaaagatttataaattctc 19882372  T
Q  294 aagatggaaagtgtggtttaaactaggttcagttatg 330  Q
    |||| ||||| | |||||||||||||||| |||||||    
T  19882373 aagacggaaaatatggtttaaactaggtttagttatg 19882409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 240
Target Start/End: Complemental strand, 15245117 - 15245068
Alignment:
Q  191 cagcagaaaacctgtttgcataaaaataaaataaattatttgtcacaaca 240  Q
    ||||||||||| ||||||||  |||||||||||||| |||||||| ||||    
T  15245117 cagcagaaaacttgtttgcaagaaaataaaataaatcatttgtcataaca 15245068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 240
Target Start/End: Complemental strand, 33079618 - 33079573
Alignment:
Q  195 agaaaacctgtttgcataaaaataaaataaattatttgtcacaaca 240  Q
    ||||||| ||||||||  | ||||||||||||||||||||||||||    
T  33079618 agaaaacttgtttgcaagagaataaaataaattatttgtcacaaca 33079573  T

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