View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9756_8 (Length: 313)
Name: NF9756_8
Description: NF9756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9756_8 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 131; Significance: 6e-68; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 171 - 313
Target Start/End: Original strand, 9989586 - 9989728
Alignment:
| Q |
171 |
caaggagggactaggatctcaggaacaacgtccctgaggcatcatttctcaacaaagggcggaggtcgtcaggaggcgactggtgaataagaatgtcggc |
270 |
Q |
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| T |
9989586 |
caaggagggactaggatctcaggaacaacgtctctgaggcatcatttctcaacaaagggcggaggttgtcaggaggcgactggtgaataagaatgtcgac |
9989685 |
T |
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| Q |
271 |
gtctgagcttgctcctagcttagaaaaataatcagcgcattga |
313 |
Q |
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| T |
9989686 |
gtctgagcttgctcctagcttagaaaaataatcagcgcattga |
9989728 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 10 - 117
Target Start/End: Original strand, 9989426 - 9989533
Alignment:
| Q |
10 |
ataatactatgactttttagttttagtcacattaactttatttcgttttagtttctatggagaataaaaaatactactacaattaaataaaattcatgta |
109 |
Q |
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| T |
9989426 |
ataaaactatgactttttagttttagtcacattaactttatttcgttttagtttctatggagaataaaaaatactactacaattaaataaaattcatgta |
9989525 |
T |
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| Q |
110 |
gaatcaac |
117 |
Q |
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| T |
9989526 |
gaatcaac |
9989533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 10 - 117
Target Start/End: Original strand, 9994494 - 9994600
Alignment:
| Q |
10 |
ataatactatgactttttagttttagtcacattaactttatttcgttttagtttctatggagaataaaaaatactactacaattaaataaaattcatgta |
109 |
Q |
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| T |
9994494 |
ataaaactatgaatttttagttttattcacattaactt-atttcgttttagtttctatggagaataaaaaatactactacaattaaataaaattcatgta |
9994592 |
T |
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| Q |
110 |
gaatcaac |
117 |
Q |
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| T |
9994593 |
gaatcaac |
9994600 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 187 - 292
Target Start/End: Complemental strand, 53016727 - 53016622
Alignment:
| Q |
187 |
tctcaggaacaacgtccctgaggcatcatttctcaacaaagggcggaggtcgtcaggaggcgactggtgaataagaatgtcggcgtctgagcttgctcct |
286 |
Q |
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| T |
53016727 |
tctcaggtataaagtccctgatgcatcacttcttaacaaagttcggaggtcgtcaggaggagactggtgaatcaggatgtcgttgtctgtgctagctcca |
53016628 |
T |
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| Q |
287 |
agctta |
292 |
Q |
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| T |
53016627 |
agctta |
53016622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 180 - 255
Target Start/End: Complemental strand, 179745 - 179670
Alignment:
| Q |
180 |
actaggatctcaggaacaacgtccctgaggcatcatttctcaacaaagggcggaggtcgtcaggaggcgactggtg |
255 |
Q |
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| T |
179745 |
actaagatctcaggaacaaggttcctgctgcatcattcttcaacaaagggcagagttcatccggaggcgactggtg |
179670 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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