View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9756_9 (Length: 309)
Name: NF9756_9
Description: NF9756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9756_9 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 16 - 309
Target Start/End: Original strand, 44089045 - 44089338
Alignment:
| Q |
16 |
agataaagaatggagaatcaaaagatttttcagtgaagatagacaaaatactagtagtagtagcactagcagaagcaacagcaatgataaaagcaggtac |
115 |
Q |
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| T |
44089045 |
agataaagaatggagaatcaaaagatttttcagtgaagatagacaaaatactagtagtagtagcactagcagaagcaacagcaatgataaaagcaggtac |
44089144 |
T |
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| Q |
116 |
atatgattannnnnnnccagaaaatctttattagataacgatgatgactactaagttacgaagtaatgatatagacacaacaccgccacgttgacactga |
215 |
Q |
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| T |
44089145 |
atatgattatttttttccagaaaatctttattagataacgatgatggctactaagttacgaagtaatgatatagacacaacaatgacacgttgacattga |
44089244 |
T |
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| Q |
216 |
taataatttaaaacaattaaataatttaatgtaatattatatgtcggtgttgcacaatggacaaacattcaatgtgaagcgtcggtggcataat |
309 |
Q |
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| T |
44089245 |
taataatttaaaacaattaaataatttaatgtaatatcatatgccggtgttacacaatggacaaacattcaatgtgaagcgtcggtggcataat |
44089338 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 249
Target Start/End: Original strand, 43328446 - 43328508
Alignment:
| Q |
187 |
tagacacaacaccgccacgttgacactgataataatttaaaacaattaaataatttaatgtaa |
249 |
Q |
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| T |
43328446 |
tagacacaacactgacacgttgacacttataataatttgagaaaatgaaataatttaatgtaa |
43328508 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 195 - 250
Target Start/End: Complemental strand, 26462717 - 26462662
Alignment:
| Q |
195 |
acaccgccacgttgacactgataataatttaaaacaattaaataatttaatgtaat |
250 |
Q |
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| T |
26462717 |
acaccgacacgtcgacactgataataatttaagaaaatgaaataattgaatgtaat |
26462662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 250
Target Start/End: Original strand, 982822 - 982870
Alignment:
| Q |
202 |
cacgttgacactgataataatttaaaacaattaaataatttaatgtaat |
250 |
Q |
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| T |
982822 |
cacgttgacactgataataaattcaaaaaattaactaatttaatgtaat |
982870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 250
Target Start/End: Original strand, 15969347 - 15969395
Alignment:
| Q |
202 |
cacgttgacactgataataatttaaaacaattaaataatttaatgtaat |
250 |
Q |
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| T |
15969347 |
cacgtcgacactgataataattttaaaaaataacataatttaatgtaat |
15969395 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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