View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9756_low_1 (Length: 577)
Name: NF9756_low_1
Description: NF9756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9756_low_1 |
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| [»] scaffold0050 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 405; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 1 - 562
Target Start/End: Original strand, 8716749 - 8717289
Alignment:
| Q |
1 |
tcatttgttcgtgaattgcagaaagactcaaaatatgggagttaatttttagatggctagattggaaagcagtggaatggagcaatgcattaattgataa |
100 |
Q |
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| T |
8716749 |
tcatttgttcgtgaattgcagaaagactcaaaatatgggatttaatttttagatggctagattggaaagcagtcgaatggagaaatgcattaattgataa |
8716848 |
T |
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| Q |
101 |
cttcatgctgtttatttcgctttgtaaaggaaagaagggtaaaaaagcgtctcatctaatttttctaacaactgtttggtgtatttggttggaaacgtaa |
200 |
Q |
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| T |
8716849 |
cttcatgctgtttatttcgctttgtaaaggaaagaatggtaaaaaagcgtctcatctaaattttctaacaactgtttggtgtatttggttggaaacgtaa |
8716948 |
T |
|
| Q |
201 |
tgtcatgatattctttttaacgggaaagatgtcaatgttcatgagatggttggtcgaattaagctgttgtcatggtcctggtttatttatagggcgggta |
300 |
Q |
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| T |
8716949 |
tgtaacgatattctttttaacgggaaagatgtcaatgttcatgagatggttggtcgaattaagctgttgtcatggtcttggtttatttatagggcgggta |
8717048 |
T |
|
| Q |
301 |
gaaacaagaactttgtcttctcaaataggtggacgaatccacttcatgttttcagatgcttttgaagcaagtaaattatttccttgtgattgatttgttc |
400 |
Q |
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| T |
8717049 |
gaaacaagaactttgtcttctcaaataggtggacaaatccacttcatgttttacgatgcttttgaagcaagtaaattatttccttgtggttgatttgttc |
8717148 |
T |
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| Q |
401 |
agtttgttgctgacatcggatgtgaagtttttaccgtgta---aggtttgaattgcattgcttcaggtttcttggtggagacaatgtgaggtttcagttc |
497 |
Q |
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| T |
8717149 |
agtttgttgatgacttcggatgtgaagtttttaccgtgtaaggaggtttgaattgcattgcttcagggttc-------------------gtttctgttc |
8717229 |
T |
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| Q |
498 |
tgttctgtctgtgttgtagtatgcatggttaaagtttctcttagcttttgtgacaactaaattgt |
562 |
Q |
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| T |
8717230 |
tg-----tctgtgttgtagtatgcatggttaaagtttctcttagcttttgtgacaactaaattgt |
8717289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 207 - 409
Target Start/End: Original strand, 8735815 - 8736016
Alignment:
| Q |
207 |
gatattctttttaacgggaaagatgtcaatgttcatgagatggttggtcgaattaagctgttgtcatggtcctggtttatttatagggcgggtagaaaca |
306 |
Q |
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| T |
8735815 |
gatattcatttcaacgggaaagctgccaatgttcatgagatggttgatcgaattaagctgttgtcgtggtcttggtttatttatagggagagtagaaaca |
8735914 |
T |
|
| Q |
307 |
agaactttgtcttctcaaataggtggacgaatccacttcatgttttcagatgcttttgaagcaagtaaattatttccttgtgattgatttgttcagtttg |
406 |
Q |
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| T |
8735915 |
agaactttatattctcaaataggtgcacgaatccacttcatgttttacgatgcttttgaagcaagt-aattgtttctgtgttgttgatttgttcagtttg |
8736013 |
T |
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| Q |
407 |
ttg |
409 |
Q |
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||| |
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| T |
8736014 |
ttg |
8736016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 441 - 530
Target Start/End: Original strand, 8736087 - 8736171
Alignment:
| Q |
441 |
aggtttgaattgcattgcttcaggtttcttggtggagacaatgtgaggtttcagttctgttctgtctgtgttgtagtatgcatggttaaa |
530 |
Q |
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| T |
8736087 |
aggtttgaattgcattgcttcaggttcattggtggggacgatgtaaggt-----ttcggttctgtctgtgttgtagtatgcatggttaaa |
8736171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0050 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0050
Description:
Target: scaffold0050; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 266 - 341
Target Start/End: Original strand, 71984 - 72059
Alignment:
| Q |
266 |
gttgtcatggtcctggtttatttatagggcgggtagaaacaagaactttgtcttctcaaataggtggacgaatcca |
341 |
Q |
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| T |
71984 |
gttgtcatggtcttggtttattatcagagacggtagaaataagaatcttgtcttctcaaatacgtggacgaatcca |
72059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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