View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9756_low_2 (Length: 407)
Name: NF9756_low_2
Description: NF9756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9756_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 365; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 11 - 391
Target Start/End: Original strand, 45141375 - 45141755
Alignment:
| Q |
11 |
cataggttggagggtaaggttgctatagtgactgggggagcaagcggaataggggcggagacagtgaagacattcgtggaaaatggagcatttgtagtta |
110 |
Q |
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| T |
45141375 |
cataggttggagggtaaggttgctatagtgactgggggagcaagcggaataggggcggagacagcgaagacattcgtggaaaatggagcatttgtagtta |
45141474 |
T |
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| Q |
111 |
tagcagatatcaatgatgaatttggccagcaagttgcaacttcaattgggttagacaaagtgagttaccaccattgtgatgtgagagatgaaaaacaagt |
210 |
Q |
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| T |
45141475 |
tagcagatatcaatgatgaattgggtcaccaagttgcaacttcaattgggttagacaaagtgagttaccaccattgtgatgtgagagatgaaaaacaagt |
45141574 |
T |
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| Q |
211 |
tgaagaaacagtagctttcgcattggaaaaatatggaaccctagacattatgtttagcaacgctggaattgaaggtggtatgtctagcagcatactagaa |
310 |
Q |
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| T |
45141575 |
tgaagaaacagtagctttcgcattggaaaaatatggaaccctagacattatgtttagcaacgctggaattgaaggtggtatgtctagcagcatactagaa |
45141674 |
T |
|
| Q |
311 |
tttgatctgaatgaatttgacaacaccatggccattaatgttcgtggatcactcgcagctatcaagcacgctgcacgtttc |
391 |
Q |
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| T |
45141675 |
tttgatctgaatgaatttgacaacaccatggccattaatgttcgtggatcactcgcagctatcaagcacgctgcacgtttc |
45141755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 11 - 384
Target Start/End: Original strand, 45152018 - 45152393
Alignment:
| Q |
11 |
cataggttggagggtaaggttgctatagtgactgggggagcaagcggaataggggcggagacagtgaagacattcgtggaaaatggagcatttgtagtta |
110 |
Q |
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| T |
45152018 |
cataggttggagggtaaggttgctatagtgactgggggagcaagcggaataggggcggagacagtgaagacattcgtggaaaatggagcatttgtagtta |
45152117 |
T |
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| Q |
111 |
tagcagatatcaatgatgaatttggccagcaagttgcaacttcaattgggttagacaaagtgagttaccaccattgtgatgtgagagatgaaaaacaagt |
210 |
Q |
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| T |
45152118 |
tagcagatatcaatgatgaattgggtcaccaagttgcaacttcaattgggttagacaaagtgagttaccaccattgtgatgtgagtgatgaaaaacaagt |
45152217 |
T |
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| Q |
211 |
tgaagaaacagtagctttcgcattggaaaaatatggaaccctagacattatgtttagcaacgctggaattgaagg------tggtatgtctagcagcata |
304 |
Q |
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| T |
45152218 |
tgaggaaaccgtagcttttgcattggaaaaatatggaaccttagacatcatgttcagcaatgctggaattggaggtgctactgctatgtctatcagcata |
45152317 |
T |
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| Q |
305 |
ctagaatttgatctgaatgaatttgacaacaccatggccattaatgttcgtggatcactcgcagctatcaagcacgctgc |
384 |
Q |
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| T |
45152318 |
cta----atgatgtaaatgaatttgacaacaccatggccattaatgttcgtggatcagctacaactatcaagcacgctgc |
45152393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 141; Significance: 8e-74; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 12 - 342
Target Start/End: Original strand, 38255843 - 38256170
Alignment:
| Q |
12 |
ataggttggagggtaaggttgctatagtgactgggggagcaagcggaataggggcggagacagtgaagacattcgtggaaaatggagcatttgtagttat |
111 |
Q |
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||||||||||||||||||| |||||||||||||||| |||||| |||||||| || || |||| |||| ||| ||||||||||||||||||||||| || |
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| T |
38255843 |
ataggttggagggtaaggtagctatagtgactggggcagcaagtggaataggagcagaagcagtaaagatatttgtggaaaatggagcatttgtagtcat |
38255942 |
T |
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| Q |
112 |
agcagatatcaatgatgaatttggccagcaagttgcaacttcaattgggttagacaaagtgagttaccaccattgtgatgtgagagatgaaaaacaagtt |
211 |
Q |
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| T |
38255943 |
agcagatatcaatgatgaattgggtcaccaacttgcaacttcaattgggttagacaaagtgagttaccaccactgtgacgtgagagaggagaaacaagtt |
38256042 |
T |
|
| Q |
212 |
gaagaaacagtagctttcgcattggaaaaatatggaaccctagacattatgtttagcaacgctggaattgaaggtggtatgtctagcagcatactagaat |
311 |
Q |
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| T |
38256043 |
gaggaaattgttgctttcacgttggagagatatggtaccttagacatcatgttcagcaatgctggtaacgctggtcctttatct---agcatactagaat |
38256139 |
T |
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| Q |
312 |
ttgatctgaatgaatttgacaacaccatggc |
342 |
Q |
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| T |
38256140 |
ttaacctaaatgaatttgacaacaccatggc |
38256170 |
T |
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