View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9756_low_5 (Length: 241)
Name: NF9756_low_5
Description: NF9756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9756_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 87; Significance: 8e-42; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 14 - 104
Target Start/End: Complemental strand, 28563573 - 28563483
Alignment:
| Q |
14 |
ataaccccaacaggtcctctgtaatcagcatcaatcacaccggcaccaacatcaatcgaatgcttccatgtcaaaccagatctcggagctg |
104 |
Q |
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| T |
28563573 |
ataaccccaacaggtcctctgtaatcagcatcaatcacaccagcaccaacatcaatcgaatgcttccatgtcaaaccagatctcggagctg |
28563483 |
T |
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Target: chr3; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 171 - 239
Target Start/End: Complemental strand, 28563416 - 28563348
Alignment:
| Q |
171 |
ggggaaaacagtaattaattaccaatacgagcataggttccttccgggacggcgatggagagatctgtg |
239 |
Q |
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| T |
28563416 |
ggggaaaacagtaattaattaccaacacgagcataggttccttcagggacggcgacggagagatctgtg |
28563348 |
T |
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