View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9757_high_1 (Length: 625)
Name: NF9757_high_1
Description: NF9757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9757_high_1 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 505; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 23 - 625
Target Start/End: Original strand, 6185279 - 6185877
Alignment:
| Q |
23 |
ccatctcctgttacagcaactacatgacctttttgttttaagcattgaaccattagaagtttgtcaaatggagatgatcttgccatcacacatatttttt |
122 |
Q |
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| T |
6185279 |
ccatctcctgttacagcaactacatgacctttttgttttaagcattgaaccattagaagtttgtcaaatggagatgatcttgccatcacacatatttttt |
6185378 |
T |
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| Q |
123 |
caaccttttctaatctctcttcgtgcgtaaagttgcgaaactgttcgccttcaaccaccgtttcatctgtgtcctgattaggttgaagaattccacattc |
222 |
Q |
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| T |
6185379 |
caaccttttctaatctctcttcgtgcgtaaagttgcgaaattgttcgccttcaaccaccgtttcatctatgtcctgattaggttgaagaattccacattc |
6185478 |
T |
|
| Q |
223 |
aaatgctatagcttttgcagtgaaaacattgtcacctattataatcagaaataaagtttgccatcattttcgtatagactcgtatgtataaatagaggat |
322 |
Q |
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| T |
6185479 |
aaatgctatagctttcgcagtgaaaacattgtcacctattataatcagagataaagttcggcatcattttcatgtagacttgtatgtataaatagacgat |
6185578 |
T |
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| Q |
323 |
tttgtagtcaatatcgatcgaaagattaagttactgataaatgagatattttagcaatacctgtgatcattttgacattcacaccagcatgttggcaagc |
422 |
Q |
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| T |
6185579 |
tttatattcgatat---tc-aaagatcaagttactcataaatgagatattatagtaatacctgtaatcattttgacattcacaccggcatgttggcaagc |
6185674 |
T |
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| Q |
423 |
ttccaccgctgtcttcacccctgggcgacatggatccttaatgccgacaagtcctaacaatgttaaatcattctcttttaccaccatcttggtgttgtct |
522 |
Q |
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| T |
6185675 |
ttccaccgctgtcttcacccctgggcgacatggatccttaatgccgacaagtcctaacaatgttaaatcattctcttttaccaccatcttggtgttgtct |
6185774 |
T |
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| Q |
523 |
ccttcatgtcctagcttttcgtctgagacttctgtacacgctaaagcgatgcaacgaagactactagctgccataccttgaataatgctttcgaatttca |
622 |
Q |
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| T |
6185775 |
ccttcatgtcctagcttttcgtctgagacttctgtacacgctaaagcgatgcaacgaagactactagctgccataccttgaataatgctttcgaatttca |
6185874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 165; Significance: 6e-88; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 165; E-Value: 6e-88
Query Start/End: Original strand, 358 - 622
Target Start/End: Original strand, 4236517 - 4236781
Alignment:
| Q |
358 |
gataaatgagatattttagcaatacctgtgatcattttgacattcacaccagcatgttggcaagcttccaccgctgtcttcacccctgggcgacatggat |
457 |
Q |
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| T |
4236517 |
gataaataagatattttagtaatacctgtaatcattttgacattcacaccagcatgttggcaagcttccactgtcgtcttcacccccgggcgacatggat |
4236616 |
T |
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| Q |
458 |
ccttaatgccgacaagtcctaacaatgttaaatcattctcttttaccaccatcttggtgttgtctccttcatgtcctagcttttcgtctgagacttctgt |
557 |
Q |
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| T |
4236617 |
ccttaatgcctacaagtcctaacaatgttaaaccattgtcttttaccaccatcttgttcatatctccttcaacttcaagctcttcgtctgtaacttttgt |
4236716 |
T |
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| Q |
558 |
acacgctaaagcgatgcaacgaagactactagctgccataccttgaataatgctttcgaatttca |
622 |
Q |
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| T |
4236717 |
atacgctaaagcgatgcaacgaagactactagccgccataccttgaataatcctttcgaatttca |
4236781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 26 - 259
Target Start/End: Original strand, 4236158 - 4236391
Alignment:
| Q |
26 |
tctcctgttacagcaactacatgacctttttgttttaagcattgaaccattagaagtttgtcaaatggagatgatcttgccatcacacatattttttcaa |
125 |
Q |
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| T |
4236158 |
tctccggttacagcaactacatgacctttttgttttaagcattgtaccattagaagtttatcaaatggagaagatcttgccatcacagagattttctcaa |
4236257 |
T |
|
| Q |
126 |
ccttttctaatctctcttcgtgcgtaaagttgcgaaactgttcgccttcaaccaccgtttcatctgtgtcctgattaggttgaagaattccacattcaaa |
225 |
Q |
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| T |
4236258 |
ctttcgccaacctctcttcgtgtgtgaagttacgaaattgttcgccttcaaccactgtttcatccgtgtcctgattaggttgaagaattccacattcaaa |
4236357 |
T |
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| Q |
226 |
tgctatagcttttgcagtgaaaacattgtcacct |
259 |
Q |
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| T |
4236358 |
tgctatagcttttgcagtgaaaacattgtcacct |
4236391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 108
Target Start/End: Original strand, 38357105 - 38357184
Alignment:
| Q |
29 |
cctgttacagcaactacatgacctttttgttttaagcattgaaccattagaagtttgtcaaatggagatgatcttgccat |
108 |
Q |
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| T |
38357105 |
cctgtgaccgcaactacatgacctttctttcttaagcattgcaccatcaaaagtttgtccataggggatgatcttgccat |
38357184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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