View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9757_high_14 (Length: 242)

Name: NF9757_high_14
Description: NF9757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9757_high_14
NF9757_high_14
[»] chr8 (5 HSPs)
chr8 (25-214)||(26175147-26175339)
chr8 (25-214)||(7275363-7275553)
chr8 (169-213)||(4677507-4677551)
chr8 (198-242)||(26175027-26175071)
chr8 (203-237)||(7275636-7275670)
[»] chr3 (5 HSPs)
chr3 (25-214)||(4607167-4607356)
chr3 (200-241)||(10745215-10745256)
chr3 (147-188)||(10745351-10745392)
chr3 (147-214)||(42656484-42656551)
chr3 (198-237)||(42657287-42657326)
[»] scaffold0001 (2 HSPs)
scaffold0001 (25-214)||(144862-145053)
scaffold0001 (198-237)||(145127-145166)
[»] chr6 (2 HSPs)
chr6 (25-214)||(6823236-6823427)
chr6 (198-237)||(6823540-6823579)
[»] chr1 (5 HSPs)
chr1 (39-213)||(35267719-35267893)
chr1 (12-214)||(9906026-9906226)
chr1 (124-214)||(18703387-18703478)
chr1 (200-241)||(35267989-35268030)
chr1 (203-237)||(18703515-18703549)
[»] chr7 (6 HSPs)
chr7 (25-214)||(34512552-34512746)
chr7 (25-214)||(41832335-41832525)
chr7 (12-214)||(7737011-7737212)
chr7 (12-213)||(219252-219448)
chr7 (20-100)||(23612133-23612213)
chr7 (198-237)||(34512434-34512473)
[»] scaffold1412 (2 HSPs)
scaffold1412 (61-214)||(2-155)
scaffold1412 (198-237)||(268-307)
[»] chr4 (4 HSPs)
chr4 (11-214)||(5444422-5444624)
chr4 (12-214)||(11814847-11815047)
chr4 (202-242)||(5444346-5444386)
chr4 (200-238)||(55850266-55850304)
[»] chr2 (4 HSPs)
chr2 (25-214)||(24039188-24039377)
chr2 (25-214)||(31269681-31269870)
chr2 (147-213)||(36316583-36316650)
chr2 (12-50)||(36316521-36316559)
[»] chr5 (7 HSPs)
chr5 (25-214)||(21256349-21256539)
chr5 (21-213)||(17823254-17823446)
chr5 (12-214)||(41949572-41949773)
chr5 (147-214)||(35304957-35305024)
chr5 (12-140)||(15543886-15544014)
chr5 (25-117)||(43233662-43233753)
chr5 (200-238)||(35305105-35305143)
[»] scaffold0263 (1 HSPs)
scaffold0263 (12-214)||(22628-22823)
[»] scaffold0525 (1 HSPs)
scaffold0525 (25-174)||(2248-2396)
[»] scaffold0862 (1 HSPs)
scaffold0862 (25-117)||(49-141)


Alignment Details
Target: chr8 (Bit Score: 147; Significance: 1e-77; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 25 - 214
Target Start/End: Complemental strand, 26175339 - 26175147
Alignment:
Q  25 gaaaatacaaggaaagatgctggaaacacatcggctaaaaaca---tagtcatcaaacaagtgcttatccaacaagaagcaaccacaactcaaggttgaa 121  Q
    |||||||||||||||||||| || ||||||||||||||||| |   ||||||||||||||||||||||||||||||||||||||| |||||||| |||||    
T  26175339 gaaaatacaaggaaagatgccgggaacacatcggctaaaaaaaaaatagtcatcaaacaagtgcttatccaacaagaagcaaccaaaactcaagattgaa 26175240  T
Q  122 ccaattgaaggaagaagcatcaatgcaacgcttaaccaccatctggtagaagcaatcatcaacaaagccaattaaggcacaacgcttaaccat 214  Q
    ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  26175239 ccaattgaaggaagaagcatcaaagcaacgcttaaccaccatccggtagaagcaatcatcaacaaagccaattaaggcaccacgcttaaccat 26175147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 25 - 214
Target Start/End: Original strand, 7275363 - 7275553
Alignment:
Q  25 gaaaatacaaggaaagatgctggaaacacatcggctaaaaacatagtcatcaaacaagtgcttatccaacaagaagcaaccacaactcaaggttgaacca 124  Q
    ||||||||||||||||||||  |||| |||| ||| || ||||||| || ||| |||  ||||||||||||||| | ||||||||||||||||  || ||    
T  7275363 gaaaatacaaggaaagatgccagaaatacattggccaagaacatag-caacaatcaaaggcttatccaacaagaggaaaccacaactcaaggtgtaatca 7275461  T
Q  125 a-ttgaaggaagaagcatcaatgcaacgcttaaccaccatctggtagaag-caatcatcaacaaagccaattaaggcacaacgcttaaccat 214  Q
      ||| ||||||||||| |||  |||||||||||||||||| |||||||| |||||||||||||||||    ||||||||| ||||||||||    
T  7275462 ccttggaggaagaagcagcaaaccaacgcttaaccaccatccggtagaagccaatcatcaacaaagccttaaaaggcacaatgcttaaccat 7275553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 169 - 213
Target Start/End: Complemental strand, 4677551 - 4677507
Alignment:
Q  169 agaagcaatcatcaacaaagccaattaaggcacaacgcttaacca 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  4677551 agaagcaatcatcaacaaagccaattaaggcacaacgcttaacca 4677507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 198 - 242
Target Start/End: Complemental strand, 26175071 - 26175027
Alignment:
Q  198 gcacaacgcttaaccattcatgacggaagcttatcaacatggctg 242  Q
    ||||||||||||||||||||||||| |||||||||||||||||||    
T  26175071 gcacaacgcttaaccattcatgacgaaagcttatcaacatggctg 26175027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 203 - 237
Target Start/End: Original strand, 7275636 - 7275670
Alignment:
Q  203 acgcttaaccattcatgacggaagcttatcaacat 237  Q
    ||||||||||||||||||| |||||||||||||||    
T  7275636 acgcttaaccattcatgacagaagcttatcaacat 7275670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 134; Significance: 7e-70; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 25 - 214
Target Start/End: Complemental strand, 4607356 - 4607167
Alignment:
Q  25 gaaaatacaaggaaagatgctggaaacacatcggctaaaaacatagtcatcaaacaagtgcttatccaacaagaagcaaccacaactcaaggttgaacca 124  Q
    |||||||||||||||||||  || ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4607356 gaaaatacaaggaaagatgtcgggaacacatcggctaaaaacaaagtcatcaaacaagtgcttatccaacaagaagcaaccacaactcaaggttgaacca 4607257  T
Q  125 attgaaggaagaagcatcaatgcaacgcttaaccaccatctggtagaagcaatcatcaacaaagccaattaaggcacaacgcttaaccat 214  Q
    |||  |||| |||||||||| ||||||||||| ||||||| ||||||||| | |||| ||||||||||||| ||||||||||||||||||    
T  4607256 atttcaggatgaagcatcaaagcaacgcttaaacaccatccggtagaagccaacatcgacaaagccaattagggcacaacgcttaaccat 4607167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 200 - 241
Target Start/End: Complemental strand, 10745256 - 10745215
Alignment:
Q  200 acaacgcttaaccattcatgacggaagcttatcaacatggct 241  Q
    ||||| |||||||||||||||| |||||||||||||||||||    
T  10745256 acaacacttaaccattcatgacagaagcttatcaacatggct 10745215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 188
Target Start/End: Complemental strand, 10745392 - 10745351
Alignment:
Q  147 caacgcttaaccaccatctggtagaagcaatcatcaacaaag 188  Q
    |||||||||||||||||||||||||||||| || ||||||||    
T  10745392 caacgcttaaccaccatctggtagaagcaagcaccaacaaag 10745351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 214
Target Start/End: Original strand, 42656484 - 42656551
Alignment:
Q  147 caacgcttaaccaccatctggtagaagcaatcatcaacaaagccaattaaggcacaacgcttaaccat 214  Q
    |||||||||||||||||| ||||||||| | || | |||||||||   |||||||||| |||||||||    
T  42656484 caacgcttaaccaccatccggtagaagccaacaaccacaaagccataaaaggcacaacacttaaccat 42656551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 198 - 237
Target Start/End: Original strand, 42657287 - 42657326
Alignment:
Q  198 gcacaacgcttaaccattcatgacggaagcttatcaacat 237  Q
    |||||||||||||||||||||||| ||||| |||||||||    
T  42657287 gcacaacgcttaaccattcatgacagaagcctatcaacat 42657326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 129; Significance: 7e-67; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 25 - 214
Target Start/End: Original strand, 144862 - 145053
Alignment:
Q  25 gaaaatacaaggaaagatgctggaaacacatcggctaaaaacata--gtcatcaaacaagtgcttatccaacaagaagcaaccacaactcaaggttgaac 122  Q
    |||||||||||||||||||| |||||||||||||||||||| |||  ||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  144862 gaaaatacaaggaaagatgccggaaacacatcggctaaaaaaatatagtcatcaaacaagagcttatccaacaagaagcaaccacaactcaaggttgaac 144961  T
Q  123 caattgaaggaagaagcatcaatgcaacgcttaaccaccatctggtagaagcaatcatcaacaaagccaattaaggcacaacgcttaaccat 214  Q
    ||||||||||||| |||||||| ||||||||||||||||||| ||||||||| |  ||| |||||||||   ||||||||||||||||||||    
T  144962 caattgaaggaaggagcatcaaagcaacgcttaaccaccatccggtagaagccaatatccacaaagccataaaaggcacaacgcttaaccat 145053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 198 - 237
Target Start/End: Original strand, 145127 - 145166
Alignment:
Q  198 gcacaacgcttaaccattcatgacggaagcttatcaacat 237  Q
    |||||| ||||||||||||||||| |||||||||||||||    
T  145127 gcacaatgcttaaccattcatgacagaagcttatcaacat 145166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 129; Significance: 7e-67; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 25 - 214
Target Start/End: Original strand, 6823236 - 6823427
Alignment:
Q  25 gaaaatacaaggaaagatgctggaaacacatcggctaaaaacata--gtcatcaaacaagtgcttatccaacaagaagcaaccacaactcaaggttgaac 122  Q
    |||||||||||||||||||| |||||||||||||||||||| |||  ||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  6823236 gaaaatacaaggaaagatgccggaaacacatcggctaaaaaaatatagtcatcaaacaagagcttatccaacaagaagcaaccacaactcaaggttgaac 6823335  T
Q  123 caattgaaggaagaagcatcaatgcaacgcttaaccaccatctggtagaagcaatcatcaacaaagccaattaaggcacaacgcttaaccat 214  Q
    ||||||||||||| |||||||| ||||||||||||||||||| ||||||||| |  ||| |||||||||   ||||||||||||||||||||    
T  6823336 caattgaaggaaggagcatcaaagcaacgcttaaccaccatccggtagaagccaatatccacaaagccataaaaggcacaacgcttaaccat 6823427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 198 - 237
Target Start/End: Original strand, 6823540 - 6823579
Alignment:
Q  198 gcacaacgcttaaccattcatgacggaagcttatcaacat 237  Q
    |||||||||||||||||||||| | |||||||||||||||    
T  6823540 gcacaacgcttaaccattcatgccagaagcttatcaacat 6823579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 123; Significance: 3e-63; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 39 - 213
Target Start/End: Original strand, 35267719 - 35267893
Alignment:
Q  39 agatgctggaaacacatcggctaaaaacatagtcatcaaacaagtgcttatccaacaagaagcaaccacaactcaaggttgaaccaattgaaggaagaag 138  Q
    |||||| ||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||  |||||||| ||||    
T  35267719 agatgccggaaacacatcggctaaaagcaaagtcatcaaacaagtgcttatccaacaagaagaaaccacaactcaaggtttaaccgcttgaaggatgaag 35267818  T
Q  139 catcaatgcaacgcttaaccaccatctggtagaagcaatcatcaacaaagccaattaaggcacaacgcttaacca 213  Q
    |||||| ||||||||||||||||||| || |||||||||||||||||| ||||||||||||||||| ||||||||    
T  35267819 catcaaagcaacgcttaaccaccatccggcagaagcaatcatcaacaatgccaattaaggcacaacacttaacca 35267893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 12 - 214
Target Start/End: Original strand, 9906026 - 9906226
Alignment:
Q  12 acatcaagcaaatgaaaatacaaggaaagatgctggaaacacatcggctaaaaacatagtcatcaaacaagtgcttatccaacaagaagcaaccacaact 111  Q
    ||||| |||||||||| |||||| ||||||||  || || |||||||| || |  |||| || ||| ||| ||| |||||||||||| | ||||||||||    
T  9906026 acatcgagcaaatgaatatacaatgaaagatgtcgggaatacatcggccaagagaatag-caacaaccaaatgcctatccaacaagaggaaaccacaact 9906124  T
Q  112 caaggttgaaccaattgaaggaagaagcatcaatgcaacgcttaaccaccatctggtagaag-caatcatcaacaaagccaattaaggcacaacgcttaa 210  Q
    ||||||  || || ||| ||  ||||||| |||  |||||||||||||||||| |||||||| |||||| ||||||||||    ||||||||||||||||    
T  9906125 caaggtgtaatcacttggag--agaagcaacaaaccaacgcttaaccaccatccggtagaagccaatcaacaacaaagccttaaaaggcacaacgcttaa 9906222  T
Q  211 ccat 214  Q
    ||||    
T  9906223 ccat 9906226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 124 - 214
Target Start/End: Original strand, 18703387 - 18703478
Alignment:
Q  124 aattgaaggaagaagcatcaatgcaacgcttaaccaccatctggtagaag-caatcatcaacaaagccaattaaggcacaacgcttaaccat 214  Q
    ||||| ||||||||||| |||  |||||||||||||||||| |||||||| |||||||||||| ||||    ||||||||||||||||||||    
T  18703387 aattggaggaagaagcaacaaaccaacgcttaaccaccatccggtagaagccaatcatcaacagagccttaaaaggcacaacgcttaaccat 18703478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 200 - 241
Target Start/End: Original strand, 35267989 - 35268030
Alignment:
Q  200 acaacgcttaaccattcatgacggaagcttatcaacatggct 241  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  35267989 acaacgcttaaccattcatgacagaagcttatcaacatggct 35268030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 203 - 237
Target Start/End: Original strand, 18703515 - 18703549
Alignment:
Q  203 acgcttaaccattcatgacggaagcttatcaacat 237  Q
    ||||||||||||||||||| |||||||||||||||    
T  18703515 acgcttaaccattcatgacagaagcttatcaacat 18703549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 115; Significance: 2e-58; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 25 - 214
Target Start/End: Complemental strand, 34512746 - 34512552
Alignment:
Q  25 gaaaatacaaggaaagatgctggaaacacatcggctaaaaa-----catagtcatcaaacaagtgcttatccaacaagaagcaaccacaactcaaggttg 119  Q
    |||||||||||||||||||| ||||||||||||||||||||     |||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  34512746 gaaaatacaaggaaagatgccggaaacacatcggctaaaaaaaaaacatagtcatcaagcaagtgcttatccaacaagaagcaaccacaactcaaggttg 34512647  T
Q  120 aaccaattgaaggaagaagcatcaatgcaacgcttaaccaccatctggtagaagcaatcatcaacaaagccaattaaggcacaacgcttaaccat 214  Q
    ||||||||||| |||| |||||||| ||||||||||||||||||| ||||||||| |  ||  |||||||||   |||||| |||||||||||||    
T  34512646 aaccaattgaatgaaggagcatcaaagcaacgcttaaccaccatccggtagaagccaatattcacaaagccataaaaggcataacgcttaaccat 34512552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 25 - 214
Target Start/End: Complemental strand, 41832525 - 41832335
Alignment:
Q  25 gaaaatacaaggaaagatgctggaaacacatcggctaaaaacatagtcatcaaacaagtgcttatccaacaagaagcaaccacaactcaaggttg-aacc 123  Q
    ||||||||||||||||||||  |||| |||| ||| || ||||||  || ||| ||| |||||||||||||||| | ||||||||||||||| || ||||    
T  41832525 gaaaatacaaggaaagatgccagaaatacattggccaagaacataa-caacaatcaaatgcttatccaacaagaggaaaccacaactcaagggtgtaacc 41832427  T
Q  124 aattgaaggaagaagcatcaatgcaacgcttaaccaccatctggtagaag-caatcatcaacaaagccaattaaggcacaacgcttaaccat 214  Q
    | ||| ||||||||||| |||  ||||||||||||||||||||||||||| |||||||||||||||||    ||||||||||||||||||||    
T  41832426 acttggaggaagaagcaacaaaccaacgcttaaccaccatctggtagaagccaatcatcaacaaagccttaaaaggcacaacgcttaaccat 41832335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 12 - 214
Target Start/End: Complemental strand, 7737212 - 7737011
Alignment:
Q  12 acatcaagcaaatgaaaatacaaggaaagatgctggaaacacatcggctaaaaacatagtcatcaaacaagtgcttatccaacaagaagcaaccacaact 111  Q
    ||||||||||||||||||||||| ||||||||| ||||| |||||| | || | |||||  | ||| ||| ||||||| |||||||| | ||||||||||    
T  7737212 acatcaagcaaatgaaaatacaaagaaagatgccggaaatacatcgaccaagagcatagaaa-caaccaaatgcttattcaacaagaggaaaccacaact 7737114  T
Q  112 caaggttgaaccaattgaaggaagaagcatcaatgcaacgcttaaccaccatctggtagaagcaatcatcaacaaagccaattaaggcacaacgcttaac 211  Q
    ||||||| ||||| ||| ||||||||||| |||  |||||||||||  ||||| | ||||||| | |||| ||||||||| | |||||||||| ||||||    
T  7737113 caaggtttaaccacttggaggaagaagcaacaaaacaacgcttaactgccatccgatagaagccaacatccacaaagccattgaaggcacaacacttaac 7737014  T
Q  212 cat 214  Q
    |||    
T  7737013 cat 7737011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 12 - 213
Target Start/End: Original strand, 219252 - 219448
Alignment:
Q  12 acatcaagcaaatgaaaatacaaggaaagatgctggaaacacatcggctaaaaacatagtcatcaaacaagtgcttatccaacaagaagcaaccacaact 111  Q
    |||||||||||||||||| ||||||| |||||   |||||||||| || ||   | ||||||||||  ||||||||||||||||||||| ||| ||||||    
T  219252 acatcaagcaaatgaaaaaacaaggagagatgtaagaaacacatcagccaa---cctagtcatcaagaaagtgcttatccaacaagaagaaac-acaact 219347  T
Q  112 caaggttgaaccaattgaaggaagaagcatcaatgcaacgcttaaccaccatctggtagaagcaatcatcaacaaagccaattaaggcacaacgcttaac 211  Q
    ||||||| ||||  |||||| || || || |||  ||||| ||||||||||||||| |||||   |||||||||||| |||||| || ||||||||||||    
T  219348 caaggtttaaccgcttgaagaaaaaa-caacaaatcaacgtttaaccaccatctggcagaagttgtcatcaacaaagacaattaggggacaacgcttaac 219446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 100
Target Start/End: Complemental strand, 23612213 - 23612133
Alignment:
Q  20 caaatgaaaatacaaggaaagatgctggaaacacatcggctaaaaacatagtcatcaaacaagtgcttatccaacaagaag 100  Q
    |||||||||| ||||||| | |||| ||||| |||||| | ||||||||||||| ||| ||| | ||||||||||| ||||    
T  23612213 caaatgaaaacacaaggagaaatgccggaaatacatcgaccaaaaacatagtcaacaaccaaatacttatccaacatgaag 23612133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 198 - 237
Target Start/End: Complemental strand, 34512473 - 34512434
Alignment:
Q  198 gcacaacgcttaaccattcatgacggaagcttatcaacat 237  Q
    |||||||||||||||||||||||| ||||||||| |||||    
T  34512473 gcacaacgcttaaccattcatgacagaagcttattaacat 34512434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1412 (Bit Score: 106; Significance: 4e-53; HSPs: 2)
Name: scaffold1412
Description:

Target: scaffold1412; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 61 - 214
Target Start/End: Original strand, 2 - 155
Alignment:
Q  61 aaaaacatagtcatcaaacaagtgcttatccaacaagaagcaaccacaactcaaggttgaaccaattgaaggaagaagcatcaatgcaacgcttaaccac 160  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||    
T  2 aaaaatatagtcatcaaacaagagcttatccaacaagaagcaaccacaactcaaggttgaaccaattgaaggaaggagcatcaaagcaacgcttaaccac 101  T
Q  161 catctggtagaagcaatcatcaacaaagccaattaaggcacaacgcttaaccat 214  Q
    |||| ||||||||| |  ||| |||||||||   ||||||||||||||||||||    
T  102 catccggtagaagccaatatccacaaagccataaaaggcacaacgcttaaccat 155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1412; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 198 - 237
Target Start/End: Original strand, 268 - 307
Alignment:
Q  198 gcacaacgcttaaccattcatgacggaagcttatcaacat 237  Q
    |||||| ||||||||||||||||| |||||||||||||||    
T  268 gcacaatgcttaaccattcatgacagaagcttatcaacat 307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 104; Significance: 6e-52; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 11 - 214
Target Start/End: Complemental strand, 5444624 - 5444422
Alignment:
Q  11 gacatcaagcaaatgaaaatacaaggaaagatgctggaaacacatcggctaaaaacatagtcatcaaacaagtgcttatccaacaagaagcaaccacaac 110  Q
    ||||||||||||||||||||||||| |||||||| ||||| |||||||| || | ||||| || ||| ||| |||||||||||||||| | |||||||||    
T  5444624 gacatcaagcaaatgaaaatacaagtaaagatgccggaaatacatcggccaagagcatag-caacaaccaaatgcttatccaacaagaggaaaccacaac 5444526  T
Q  111 tcaaggttgaaccaattgaaggaagaagcatcaatgcaacgcttaaccaccatctggtagaagcaatcatcaacaaagccaattaaggcacaacgcttaa 210  Q
    ||||||| ||| || ||| ||||||||||| ||| ||||||||||||||||||| ||||||||| | ||||||||||||||   ||||||||||||||||    
T  5444525 tcaaggtggaatcatttggaggaagaagcaacaaagcaacgcttaaccaccatccggtagaagccaacatcaacaaagccataaaaggcacaacgcttaa 5444426  T
Q  211 ccat 214  Q
    ||||    
T  5444425 ccat 5444422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 214
Target Start/End: Complemental strand, 11815047 - 11814847
Alignment:
Q  12 acatcaagcaaatgaaaatacaaggaaagatgctggaaacacatcggctaaaaacatagtcatcaaacaagtgcttatccaacaagaagcaaccacaact 111  Q
    ||||||| |||||||||||||||| | |||||| ||||    |||||| || | ||||| || ||| ||| |||||||||||| ||| | ||||||||||    
T  11815047 acatcaaacaaatgaaaatacaagtagagatgccggaagtttatcggccaagagcatag-caacaaccaaatgcttatccaaccagaggaaaccacaact 11814949  T
Q  112 caaggttgaaccaattgaaggaagaagcatcaatgcaacgcttaaccaccatctggtagaagcaatcatcaacaaagccaattaaggcacaacgcttaac 211  Q
    ||||||| ||||  |||| | |||||||| |||  ||||||||||||||||| |||||||||||| ||   |||||||||   ||| |||||||||||||    
T  11814948 caaggtttaaccgcttgatg-aagaagcaacaaaacaacgcttaaccaccatatggtagaagcaagcaagcacaaagccataaaagacacaacgcttaac 11814850  T
Q  212 cat 214  Q
    |||    
T  11814849 cat 11814847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 202 - 242
Target Start/End: Complemental strand, 5444386 - 5444346
Alignment:
Q  202 aacgcttaaccattcatgacggaagcttatcaacatggctg 242  Q
    |||||||||||||||||||||||||| ||||||||||||||    
T  5444386 aacgcttaaccattcatgacggaagcgtatcaacatggctg 5444346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Original strand, 55850266 - 55850304
Alignment:
Q  200 acaacgcttaaccattcatgacggaagcttatcaacatg 238  Q
    ||||||||||||||||||||| |||||| ||||||||||    
T  55850266 acaacgcttaaccattcatgatggaagcatatcaacatg 55850304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 91; Significance: 3e-44; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 25 - 214
Target Start/End: Complemental strand, 24039377 - 24039188
Alignment:
Q  25 gaaaatacaaggaaagatgctggaaacacatcggctaaaaacatagtcatcaaacaagtgcttatccaacaagaagcaaccacaactcaaggttgaacca 124  Q
    ||||||||||||||||||||| |||| |||| ||| || ||||||| || ||| ||| |||||||||||||||| | ||||||||||||||||  |||||    
T  24039377 gaaaatacaaggaaagatgctagaaatacattggccaagaacatag-caacaatcaaatgcttatccaacaagaggaaaccacaactcaaggtgtaacca 24039279  T
Q  125 attgaaggaagaagcatcaatgcaacgcttaaccaccatctggtagaag-caatcatcaacaaagccaattaaggcacaacgcttaaccat 214  Q
     ||| ||||||||||| |||  ||||||||||||||||||||||||||| |||||||||||||||||    ||||||||||||||||||||    
T  24039278 cttggaggaagaagcaacaaaccaacgcttaaccaccatctggtagaagccaatcatcaacaaagccttaaaaggcacaacgcttaaccat 24039188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 25 - 214
Target Start/End: Original strand, 31269681 - 31269870
Alignment:
Q  25 gaaaatacaaggaaagatgctggaaacacatcggctaaaaacatagtcatcaaacaagtgcttatccaacaagaagcaaccacaactcaaggttgaacca 124  Q
    ||||||||||||||||||||| |||| |||| ||| || ||||||| || ||| ||| |||||||||||||||| | ||||||||||||||||  |||||    
T  31269681 gaaaatacaaggaaagatgctagaaatacattggccaagaacatag-caacaatcaaatgcttatccaacaagaggaaaccacaactcaaggtgtaacca 31269779  T
Q  125 attgaaggaagaagcatcaatgcaacgcttaaccaccatctggtagaag-caatcatcaacaaagccaattaaggcacaacgcttaaccat 214  Q
     ||| ||||||||||| ||   ||||||||||||||||||||||||||| |||||||||||||||||    ||||||||||||||||||||    
T  31269780 cttggaggaagaagcaacagaccaacgcttaaccaccatctggtagaagccaatcatcaacaaagccttaaaaggcacaacgcttaaccat 31269870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 147 - 213
Target Start/End: Original strand, 36316583 - 36316650
Alignment:
Q  147 caacgcttaaccaccatctggtagaagcaatcatc-aacaaagccaattaaggcacaacgcttaacca 213  Q
    |||||||||||||||||||||||||||||| || | ||||||||||||||||||||||||||||||||    
T  36316583 caacgcttaaccaccatctggtagaagcaaacaaccaacaaagccaattaaggcacaacgcttaacca 36316650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 12 - 50
Target Start/End: Original strand, 36316521 - 36316559
Alignment:
Q  12 acatcaagcaaatgaaaatacaaggaaagatgctggaaa 50  Q
    |||||||||||||||||||||||||||||||||||||||    
T  36316521 acatcaagcaaatgaaaatacaaggaaagatgctggaaa 36316559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 88; Significance: 2e-42; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 25 - 214
Target Start/End: Complemental strand, 21256539 - 21256349
Alignment:
Q  25 gaaaatacaaggaaagatgctggaaacacatcggctaaaaacatagtcatcaaacaagtgcttatccaacaagaagcaaccacaactcaaggttgaacca 124  Q
    ||||||||||||||||||||| |||| |||| ||| || ||||||| || ||| ||| |||||||||||||||| | ||||||||||||||||  |||||    
T  21256539 gaaaatacaaggaaagatgctagaaatacattggccaagaacatag-caacaatcaaatgcttatccaacaagaggaaaccacaactcaaggtgtaacca 21256441  T
Q  125 attgaaggaagaagcatcaatgcaacgcttaaccaccatctggtagaag-caatcatcaacaaagcc-aattaaggcacaacgcttaaccat 214  Q
     ||| ||||||||||| |||  ||||||||||||||||||||||||||| |||||||||||||||||  |  ||||||||||||||||||||    
T  21256440 cttggaggaagaagcaacaaaccaacgcttaaccaccatctggtagaagccaatcatcaacaaagccttaaaaaggcacaacgcttaaccat 21256349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 21 - 213
Target Start/End: Complemental strand, 17823446 - 17823254
Alignment:
Q  21 aaatgaaaatacaaggaaagatgctggaaacacatcggctaaaaacatagtcatcaaacaagtgcttatccaacaagaagcaaccacaactcaaggttga 120  Q
    |||||||||||||| || |||||||||||| ||||||||||||| |||||||| ||| ||| ||||||| |||||||||| ||||| || |||||||| |    
T  17823446 aaatgaaaatacaatgagagatgctggaaatacatcggctaaaagcatagtcaacaagcaaatgcttattcaacaagaagaaaccataattcaaggttta 17823347  T
Q  121 accaattgaaggaagaagcatcaatgcaacgcttaaccaccatctggtagaagcaatcatcaacaaagccaattaaggcacaacgcttaacca 213  Q
    |||| ||| ||||||||||| |||  |||| ||||| ||||||     ||||   ||||||||||||||| ||||||||||||||||||||||    
T  17823346 accacttggaggaagaagcaacaaatcaacccttaatcaccattcaacagaaattatcatcaacaaagccgattaaggcacaacgcttaacca 17823254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 12 - 214
Target Start/End: Original strand, 41949572 - 41949773
Alignment:
Q  12 acatcaagcaaatgaaaatacaaggaaagatgctggaaacacatcggctaaaaacatagtcatcaaacaagtgcttatccaacaagaagcaaccacaact 111  Q
    ||||||||||||||||||||||||||||||||| ||||| | |||||| || |  | || || ||| ||| |||||||||||||||| | ||||||||||    
T  41949572 acatcaagcaaatgaaaatacaaggaaagatgccggaaatatatcggccaagagaagag-cagcaaccaaatgcttatccaacaagaggaaaccacaact 41949670  T
Q  112 caaggttgaaccaattgaaggaagaagcatcaatgcaacgcttaaccaccatctggtagaagcaatcatcaacaaagccaattaaggcacaacgcttaac 211  Q
    ||| ||  ||||| ||| ||||||||||| |||  |||| ||||||||||||| ||||||||| | |||| |||||||||   |||||||||||||||||    
T  41949671 caatgtgtaaccacttggaggaagaagcaacaaaccaacacttaaccaccatccggtagaagccaacatcgacaaagccataaaaggcacaacgcttaac 41949770  T
Q  212 cat 214  Q
    |||    
T  41949771 cat 41949773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 147 - 214
Target Start/End: Original strand, 35304957 - 35305024
Alignment:
Q  147 caacgcttaaccaccatctggtagaagcaatcatcaacaaagccaattaaggcacaacgcttaaccat 214  Q
    |||||||||||||||||| ||||||||||| || | |||||||||   ||||||||||||||||||||    
T  35304957 caacgcttaaccaccatccggtagaagcaaacaaccacaaagccataaaaggcacaacgcttaaccat 35305024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 140
Target Start/End: Original strand, 15543886 - 15544014
Alignment:
Q  12 acatcaagcaaatgaaaatacaaggaaagatgctggaaacacatcggctaaaaacatagtcatcaaacaagtgcttatccaacaagaagcaaccacaact 111  Q
    ||||||| |||||||||||||||||| | ||||   ||| ||||| | |   |||||||||||||| | | |||||||||||||| ||| ||||||||||    
T  15543886 acatcaaacaaatgaaaatacaaggagaaatgccaaaaatacatcagttgtcaacatagtcatcaagcgaatgcttatccaacaaaaagaaaccacaact 15543985  T
Q  112 caaggttgaaccaattgaaggaagaagca 140  Q
     |||||| | ||  ||| |||||||||||    
T  15543986 taaggtttacccgcttggaggaagaagca 15544014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 117
Target Start/End: Complemental strand, 43233753 - 43233662
Alignment:
Q  25 gaaaatacaaggaaagatgctggaaacacatcggctaaaaacatagtcatcaaacaagtgcttatccaacaagaagcaaccacaactcaaggt 117  Q
    |||||||||||||||||| | ||||| |||||| | || |  |||| || ||| ||| |||||||||||||||| | ||||||||||||||||    
T  43233753 gaaaatacaaggaaagataccggaaatacatcgaccaagagaatag-caacaaccaaatgcttatccaacaagaggaaaccacaactcaaggt 43233662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Original strand, 35305105 - 35305143
Alignment:
Q  200 acaacgcttaaccattcatgacggaagcttatcaacatg 238  Q
    |||||||||||| ||||||||||||||| ||||||||||    
T  35305105 acaacgcttaactattcatgacggaagcatatcaacatg 35305143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 12 - 214
Target Start/End: Complemental strand, 22823 - 22628
Alignment:
Q  12 acatcaagcaaatgaaaatacaaggaaagatgctggaaacacatcggctaaaaacatagtcatcaaacaagtgcttatccaacaagaagcaaccacaact 111  Q
    ||||||||||||||||||||||||| ||||||| ||||| |||||||| || | ||||| || ||| ||| |||||||||||||||| | ||||||||||    
T  22823 acatcaagcaaatgaaaatacaaggtaagatgccggaaatacatcggccaagagcatag-caacaaccaaatgcttatccaacaagaggaaaccacaact 22725  T
Q  112 caaggttgaaccaattgaaggaagaagcatcaatgcaacgcttaaccaccatctggtagaagcaatcatcaacaaagccaattaaggcacaacgcttaac 211  Q
    ||       |||| ||| ||||||||||| |||  |||||||||||||||||| ||| ||||| | |||| |||||||||   ||| |||||||||||||    
T  22724 ca------gaccacttggaggaagaagcaacaaaccaacgcttaaccaccatccggtggaagccaacatcgacaaagccataaaagacacaacgcttaac 22631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0525 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: scaffold0525
Description:

Target: scaffold0525; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 25 - 174
Target Start/End: Original strand, 2248 - 2396
Alignment:
Q  25 gaaaatacaaggaaagatgctggaaacacatcggctaaaaacatagtcatcaaacaagtgcttatccaacaagaagcaaccacaactcaaggttgaacca 124  Q
    |||| |||||||||||||| |||||| |||| ||| || ||||||| || ||| ||| |||||||||||||||| | ||||||||||||||||  || ||    
T  2248 gaaagtacaaggaaagatgttggaaatacattggccaagaacatag-caacaatcaaatgcttatccaacaagaggaaaccacaactcaaggtgtaatca 2346  T
Q  125 attgaaggaagaagcatcaatgcaacgcttaaccaccatctggtagaagc 174  Q
     ||| ||||||||||| |||  |||||||||||||||||| |||||||||    
T  2347 cttggaggaagaagcaacaaaccaacgcttaaccaccatccggtagaagc 2396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0862 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0862
Description:

Target: scaffold0862; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 117
Target Start/End: Complemental strand, 141 - 49
Alignment:
Q  25 gaaaatacaaggaaagatgctggaaacacatcggctaaaaacatagtcatcaaacaagtgctta-tccaacaagaagcaaccacaactcaaggt 117  Q
    |||||||||||||||||||| ||||| |||| ||| || ||||||| || ||| ||| |||||| ||||||||||   ||||||||||||||||    
T  141 gaaaatacaaggaaagatgccggaaatacattggccaagaacatag-caacaatcaaatgcttactccaacaagagaaaaccacaactcaaggt 49  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University