View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9757_high_16 (Length: 237)

Name: NF9757_high_16
Description: NF9757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9757_high_16
NF9757_high_16
[»] chr5 (9 HSPs)
chr5 (1-223)||(13373734-13373955)
chr5 (1-119)||(9671030-9671148)
chr5 (5-119)||(13375194-13375308)
chr5 (1-191)||(9672219-9672412)
chr5 (132-190)||(38626172-38626230)
chr5 (130-188)||(35929523-35929581)
chr5 (136-190)||(38624715-38624769)
chr5 (139-188)||(16310108-16310157)
chr5 (132-190)||(16308564-16308622)
[»] scaffold0060 (2 HSPs)
scaffold0060 (1-193)||(13119-13314)
scaffold0060 (1-119)||(11849-11967)
[»] chr4 (23 HSPs)
chr4 (1-190)||(4906128-4906317)
chr4 (32-190)||(29756271-29756429)
chr4 (32-189)||(4907363-4907520)
chr4 (1-189)||(4931998-4932186)
chr4 (1-119)||(7108325-7108443)
chr4 (32-190)||(4933232-4933391)
chr4 (1-191)||(29757478-29757669)
chr4 (1-188)||(35785166-35785351)
chr4 (1-191)||(23703733-23703924)
chr4 (1-187)||(22674154-22674340)
chr4 (1-187)||(35786548-35786737)
chr4 (31-191)||(55019258-55019418)
chr4 (72-188)||(23702398-23702519)
chr4 (5-119)||(38158505-38158619)
chr4 (132-191)||(2671539-2671598)
chr4 (132-191)||(22307669-22307728)
chr4 (132-188)||(33609346-33609402)
chr4 (132-191)||(34538124-34538183)
chr4 (41-119)||(39665344-39665422)
chr4 (133-191)||(54534976-54535034)
chr4 (130-191)||(2672963-2673024)
chr4 (131-187)||(28426836-28426892)
chr4 (138-186)||(39665274-39665322)
[»] chr6 (13 HSPs)
chr6 (1-189)||(842186-842374)
chr6 (32-190)||(843422-843581)
chr6 (1-189)||(20773312-20773500)
chr6 (5-191)||(19401996-19402183)
chr6 (5-190)||(11065528-11065714)
chr6 (5-186)||(30321039-30321220)
chr6 (7-191)||(19597854-19598038)
chr6 (31-190)||(19596342-19596501)
chr6 (5-191)||(7796747-7796935)
chr6 (35-190)||(19579891-19580046)
chr6 (5-190)||(12599896-12600081)
chr6 (5-189)||(7800113-7800296)
chr6 (132-189)||(1443417-1443474)
[»] chr8 (15 HSPs)
chr8 (1-191)||(357975-358166)
chr8 (1-117)||(21143899-21144015)
chr8 (32-190)||(359215-359374)
chr8 (1-188)||(21142480-21142664)
chr8 (133-191)||(37964645-37964703)
chr8 (130-191)||(7272898-7272959)
chr8 (48-96)||(37963367-37963415)
chr8 (132-191)||(3158039-3158098)
chr8 (132-191)||(39886078-39886137)
chr8 (132-190)||(22714051-22714109)
chr8 (49-119)||(37964568-37964638)
chr8 (132-190)||(39884615-39884673)
chr8 (130-191)||(17707448-17707509)
chr8 (130-190)||(36899897-36899957)
chr8 (137-189)||(45448499-45448551)
[»] chr3 (24 HSPs)
chr3 (1-187)||(24613483-24613669)
chr3 (32-188)||(24612279-24612434)
chr3 (1-186)||(33781364-33781550)
chr3 (5-189)||(31199249-31199432)
chr3 (56-117)||(33780735-33780796)
chr3 (31-119)||(31200847-31200934)
chr3 (132-190)||(41081801-41081859)
chr3 (130-190)||(3026881-3026941)
chr3 (131-191)||(32558917-32558977)
chr3 (136-190)||(40499258-40499312)
chr3 (130-191)||(5387255-5387316)
chr3 (136-189)||(31796840-31796893)
chr3 (130-190)||(33780656-33780716)
chr3 (132-191)||(3150021-3150080)
chr3 (157-196)||(32559910-32559949)
chr3 (136-191)||(41083277-41083332)
chr3 (132-189)||(32613883-32613941)
chr3 (132-190)||(48566995-48567053)
chr3 (51-96)||(27320618-27320663)
chr3 (51-96)||(27362376-27362421)
chr3 (132-189)||(31795373-31795430)
chr3 (136-189)||(48568536-48568589)
chr3 (132-189)||(55196574-55196631)
chr3 (130-190)||(25529917-25529977)
[»] chr1 (26 HSPs)
chr1 (32-191)||(26734424-26734585)
chr1 (5-190)||(8323314-8323499)
chr1 (5-190)||(31815645-31815830)
chr1 (5-190)||(52793703-52793888)
chr1 (1-118)||(42301488-42301605)
chr1 (40-190)||(9627491-9627641)
chr1 (31-189)||(8322521-8322678)
chr1 (5-190)||(31809988-31810174)
chr1 (5-119)||(42300523-42300637)
chr1 (1-188)||(9626469-9626658)
chr1 (131-190)||(43883806-43883865)
chr1 (132-190)||(12095876-12095934)
chr1 (130-191)||(50315316-50315377)
chr1 (130-190)||(28251930-28251990)
chr1 (132-188)||(31027226-31027282)
chr1 (132-191)||(12097942-12098001)
chr1 (155-191)||(31034145-31034181)
chr1 (130-190)||(32847813-32847873)
chr1 (132-191)||(22684152-22684211)
chr1 (132-190)||(24437073-24437131)
chr1 (132-189)||(13222914-13222971)
chr1 (131-196)||(27524258-27524323)
chr1 (132-189)||(46604439-46604496)
chr1 (159-191)||(9419847-9419879)
chr1 (130-190)||(11431329-11431389)
chr1 (130-190)||(33755316-33755376)
[»] chr2 (27 HSPs)
chr2 (1-187)||(42928937-42929121)
chr2 (1-189)||(10343988-10344176)
chr2 (31-190)||(22054333-22054492)
chr2 (5-189)||(22060035-22060219)
chr2 (5-186)||(10345022-10345203)
chr2 (5-190)||(43516397-43516582)
chr2 (5-189)||(40128802-40128986)
chr2 (1-190)||(44820799-44820990)
chr2 (36-118)||(42931681-42931763)
chr2 (35-190)||(43517982-43518137)
chr2 (8-191)||(44819767-44819950)
chr2 (31-187)||(40127242-40127398)
chr2 (132-191)||(28165656-28165715)
chr2 (132-189)||(40304764-40304821)
chr2 (136-191)||(40303291-40303346)
chr2 (132-191)||(45493034-45493093)
chr2 (132-191)||(45500776-45500835)
chr2 (136-190)||(45499304-45499358)
chr2 (130-190)||(18224845-18224905)
chr2 (132-191)||(6844099-6844158)
chr2 (132-191)||(34591723-34591782)
chr2 (7-70)||(42827436-42827499)
chr2 (157-188)||(44095359-44095390)
chr2 (132-190)||(44097355-44097413)
chr2 (135-188)||(22060485-22060538)
chr2 (135-191)||(44492316-44492372)
chr2 (132-184)||(44904532-44904584)
[»] scaffold0129 (1 HSPs)
scaffold0129 (31-191)||(4159-4318)
[»] chr7 (14 HSPs)
chr7 (31-189)||(41593104-41593262)
chr7 (5-190)||(41591514-41591699)
chr7 (7-192)||(41385684-41385871)
chr7 (31-190)||(41384148-41384307)
chr7 (132-191)||(46246577-46246636)
chr7 (130-191)||(27160303-27160364)
chr7 (130-191)||(37547932-37547993)
chr7 (130-189)||(11669841-11669900)
chr7 (132-190)||(12178482-12178540)
chr7 (130-191)||(27161995-27162056)
chr7 (136-189)||(46245122-46245175)
chr7 (132-191)||(38758319-38758378)
chr7 (130-191)||(706741-706802)
chr7 (130-190)||(32429870-32429930)
[»] scaffold0280 (1 HSPs)
scaffold0280 (132-191)||(12129-12188)


Alignment Details
Target: chr5 (Bit Score: 133; Significance: 3e-69; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 13373955 - 13373734
Alignment:
Q  1 aatgtgccaactcatgaactgtcacatgtactccgttagccaccatgacgtttttgttgacagaagctgacggcaaggactattttcaaaaggttaaaaa 100  Q
    ||||||||||||||||||||| ||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  13373955 aatgtgccaactcatgaactgccacgtgtactcggttagccaccatggcgtttttgttgacagaagctgacggcaaggactattttcaaaaggtttaaaa 13373856  T
Q  101 gatacagggtttattttagnnnnnnnnnncttacagggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaagcctactataaaat 200  Q
    ||||||||||| | ||||            |||||| ||||||||| ||||||| ||||||||||| |||||||| ||||||||||||||||||||||||    
T  13373855 gatacagggttca-tttaaaaaaaaaaaaattacagagacgaaaacaaaaaatggacgaacttacagggacctttgacatatttaagcctactataaaat 13373757  T
Q  201 tacataatgttgctgttgctttt 223  Q
    |||||||||||||||||||||||    
T  13373756 tacataatgttgctgttgctttt 13373734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 9671148 - 9671030
Alignment:
Q  1 aatgtgccaactcatgaactgtcacatgtactccgttagccaccatgacgtttttgttgacagaagctgacggcaaggactattttcaaaaggttaaaaa 100  Q
    ||||||||||||||||||||| ||| ||| ||||||||||||||||| ||||||  |||||||||| ||||| ||| |||||||||||||||||||| ||    
T  9671148 aatgtgccaactcatgaactgccacgtgtgctccgttagccaccatggcgttttacttgacagaagttgacgacaaagactattttcaaaaggttaagaa 9671049  T
Q  101 gatacagggtttattttag 119  Q
    |||||| |||| |||||||    
T  9671048 gatacaaggttcattttag 9671030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 5 - 119
Target Start/End: Original strand, 13375194 - 13375308
Alignment:
Q  5 tgccaactcatgaactgtcacatgtactccgttagccaccatgacgtttttgttgacagaagctgacggcaaggactattttcaaaaggttaaaaagata 104  Q
    ||||||||||||| ||| ||||||| ||||||||||||| ||| |||||||||||||||||||||||| ||| ||| |||||| ||||||||| |||||     
T  13375194 tgccaactcatgacctgccacatgtgctccgttagccacaatggcgtttttgttgacagaagctgacgacaatgaccattttccaaaggttaagaagatg 13375293  T
Q  105 cagggtttattttag 119  Q
    |||||||||||||||    
T  13375294 cagggtttattttag 13375308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 9672219 - 9672412
Alignment:
Q  1 aatgtgccaactcatgaactgtcacatgtactccgttagccaccatgacgtttttgttgacagaagctgacggcaaggactattttcaaaaggttaaaaa 100  Q
    |||||||||||||||||  || ||| ||| ||||||||||||   || |||||||||||||| ||||| || |||||||| |||||||||||||||| ||    
T  9672219 aatgtgccaactcatgacttgccacctgtgctccgttagccaaagtggcgtttttgttgacataagctaactgcaaggaccattttcaaaaggttaagaa 9672318  T
Q  101 gatacagggtttattttag---nnnnnnnnnncttacagggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaagccta 191  Q
    |||||||||||||||||||              |||||||||||||||| |||||||  |||||||||| |||||||||| |||||||||||||    
T  9672319 gatacagggtttattttaggaagaaaaaaaaaattacagggacgaaaacaaaaaatgcgcgaacttacagggaccttttatatatttaagccta 9672412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 132 - 190
Target Start/End: Original strand, 38626172 - 38626230
Alignment:
Q  132 tacagggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaagcct 190  Q
    |||| ||||||||||||||||  | |||||||||| |||||||||||||||||||||||    
T  38626172 tacatggacgaaaaccaaaaacatgcgaacttacagggaccttttacatatttaagcct 38626230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 130 - 188
Target Start/End: Complemental strand, 35929581 - 35929523
Alignment:
Q  130 cttacagggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaagc 188  Q
    ||||||||||||||||||||||    ||||||||||| ||||||||||| |||||||||    
T  35929581 cttacagggacgaaaaccaaaatctcacgaacttacaaggaccttttacttatttaagc 35929523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 136 - 190
Target Start/End: Complemental strand, 38624769 - 38624715
Alignment:
Q  136 gggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaagcct 190  Q
    |||||||||||||||||    |||||||||| |||||||||||||||||||||||    
T  38624769 gggacgaaaaccaaaaacacgcgaacttacagggaccttttacatatttaagcct 38624715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 188
Target Start/End: Original strand, 16310108 - 16310157
Alignment:
Q  139 acgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaagc 188  Q
    ||||||||||||||  |||||||||||||||||  |||||||||||||||    
T  16310108 acgaaaaccaaaaacatacgaacttacatggacgatttacatatttaagc 16310157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 190
Target Start/End: Complemental strand, 16308622 - 16308564
Alignment:
Q  132 tacagggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaagcct 190  Q
    |||||||||||||||||||||    |||||||||| ||||  |||||||||||||||||    
T  16308622 tacagggacgaaaaccaaaaacacgcgaacttacagggacgatttacatatttaagcct 16308564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 13119 - 13314
Alignment:
Q  1 aatgtgccaactcatgaactgtcacatgtactccgttagccaccatgacgtttttgttgacagaagctgacggcaaggactattttcaaaaggttaaaaa 100  Q
    ||||||||||||||||||||| ||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  13119 aatgtgccaactcatgaactgccacctgtgctccgttagccaccatggcgtttttgttgacagaagctgacggcaaggactattttcaaaaggttaagaa 13218  T
Q  101 gatacagggtttattttag---nnnnnnnnnncttacagggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaagcctact 193  Q
    |||||| |||| |||||||             |||||||| |||||||| |||||||   ||||||||| ||||||||||||||||||||||||||    
T  13219 gatacatggttcattttagaaagaaaaaaaaacttacaggaacgaaaacaaaaaatgcgtgaacttacagggaccttttacatatttaagcctact 13314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 11967 - 11849
Alignment:
Q  1 aatgtgccaactcatgaactgtcacatgtactccgttagccaccatgacgtttttgttgacagaagctgacggcaaggactattttcaaaaggttaaaaa 100  Q
    |||||||||||||||||  |||||||||| ||||||||||||   || |||||||||| ||||||||| ||| ||| ||| |||||||||||||||| ||    
T  11967 aatgtgccaactcatgacttgtcacatgtgctccgttagccatagtggcgtttttgtttacagaagctaacgacaatgaccattttcaaaaggttaagaa 11868  T
Q  101 gatacagggtttattttag 119  Q
     |||| |||||||||||||    
T  11867 aatacggggtttattttag 11849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 100; Significance: 1e-49; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 4906317 - 4906128
Alignment:
Q  1 aatgtgccaactcatgaactgtcacatgtactccgttagccaccatgacgtttttgttgacagaagctgacggcaaggactattttcaaaaggttaaaaa 100  Q
    ||||||||||||||| |  || ||| ||| |||||||||||||  || |||||||||||||||||||| ||||||||||| |||||||||||||||| ||    
T  4906317 aatgtgccaactcataacttgccacctgtgctccgttagccacagtggcgtttttgttgacagaagctaacggcaaggaccattttcaaaaggttaagaa 4906218  T
Q  101 gatacagggtttattttagnnnnnnnnnncttacagggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaagcct 190  Q
    |||||||||||||||||||          |||||||||||||||||||||||||  |||||||||| |||||||||||||||||||||||    
T  4906217 gatacagggtttattttagaaaaaaaaaacttacagggacgaaaaccaaaaatgcgcgaacttacagggaccttttacatatttaagcct 4906128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 32 - 190
Target Start/End: Complemental strand, 29756429 - 29756271
Alignment:
Q  32 tccgttagccaccatgacgtttttgttgacagaagctgacggcaaggactattttcaaaaggttaaaaagatacagggtttattttagnnnnnnnnnnct 131  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |||||||          ||    
T  29756429 tccgttagccaccatggcgtttttgttgacagaagctgacggcaaggactattttcaaaaggttgagaagatacagggttcattttagaaaaaaaaaact 29756330  T
Q  132 tacagggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaagcct 190  Q
    | |||||||||||||||||||||  |||||||||| |||||||||||||||||||||||    
T  29756329 tgcagggacgaaaaccaaaaatgcgcgaacttacagggaccttttacatatttaagcct 29756271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 32 - 189
Target Start/End: Original strand, 4907363 - 4907520
Alignment:
Q  32 tccgttagccaccatgacgtttttgttgacagaagctgacggcaaggactattttcaaaaggttaaaaagatacagggtttattttagnnnnnnnnnnct 131  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |||||||          ||    
T  4907363 tccgttagccaccatggcgtttttgttgacagaagctgacggcaaggactattttcaaaaggttgagaagatacagggttcattttagaaaaaaaaaact 4907462  T
Q  132 tacagggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaagcc 189  Q
    | |||||||||||||||||||||  |||||||||| ||||||||||||||||||||||    
T  4907463 tgcagggacgaaaaccaaaaatgcgcgaacttacagggaccttttacatatttaagcc 4907520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 4932186 - 4931998
Alignment:
Q  1 aatgtgccaactcatgaactgtcacatgtactccgttagccaccatgacgtttttgttgacagaagctgacggcaaggactattttcaaaaggttaaaaa 100  Q
    ||||||||||||||| |  || ||| ||| |||||||||||||  || |||||||||||||||||||| ||||||||||| |||||||||||||||| ||    
T  4932186 aatgtgccaactcataacttgccacctgtgctccgttagccacagtggcgtttttgttgacagaagctaacggcaaggaccattttcaaaaggttaagaa 4932087  T
Q  101 gatacagggtttattttagnnnnnnnnnncttacagggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaagcc 189  Q
    ||||||||||||||||||           |||||||||||||||||||||||||  |||||||||| ||||||||||||||||||||||    
T  4932086 gatacagggtttattttaaaaaaaaaaaacttacagggacgaaaaccaaaaatgcgcgaacttacagggaccttttacatatttaagcc 4931998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 7108325 - 7108443
Alignment:
Q  1 aatgtgccaactcatgaactgtcacatgtactccgttagccaccatgacgtttttgttgacagaagctgacggcaaggactattttcaaaaggttaaaaa 100  Q
    ||||||||||||||||||||| ||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  7108325 aatgtgccaactcatgaactgccacgtgtgctccgttagccaccatgacatttttgttgacagaagctgacggcaaggactattttcaaaaggttaagaa 7108424  T
Q  101 gatacagggtttattttag 119  Q
    |||||| |||| |||||||    
T  7108425 gatacaaggttcattttag 7108443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 32 - 190
Target Start/End: Original strand, 4933232 - 4933391
Alignment:
Q  32 tccgttagccaccatgacgtttttgttgacagaagctgacggcaaggactattttcaaaaggttaaaaagatacagggtttattttag-nnnnnnnnnnc 130  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |||||||           |    
T  4933232 tccgttagccaccatggcgtttttgttgacagaagctgacggcaaggactattttcaaaaggttgagaagatacagggttcattttagaagaaaaaaaac 4933331  T
Q  131 ttacagggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaagcct 190  Q
    || |||||||||||||||||||||  |||||||||| |||||||||||||||||||||||    
T  4933332 ttgcagggacgaaaaccaaaaatgcgcgaacttacagggaccttttacatatttaagcct 4933391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 29757478 - 29757669
Alignment:
Q  1 aatgtgccaactcatgaactgtcacatgtactccgttagccaccatgacgtttttgttgacagaagctgacggcaaggactattttcaaaaggttaaaaa 100  Q
    ||||||||||||||| |  || ||| ||| |||||||||||||  || |||||||||||||||||||| ||||||||||| |||||||||||||||| ||    
T  29757478 aatgtgccaactcataacttgccacctgtgctccgttagccacagtggcgtttttgttgacagaagctaacggcaaggaccattttcaaaaggttaagaa 29757577  T
Q  101 gatacagggtttattttag-nnnnnnnnnncttacagggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaagccta 191  Q
    |||||||||||||||||||           |||||||||||||||||||||||||   ||||||||| ||||||||||||||||||||||||    
T  29757578 gatacagggtttattttagaaaaaaaaaaacttacagggacgaaaaccaaaaatgcgtgaacttacagggaccttttacatatttaagccta 29757669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 35785351 - 35785166
Alignment:
Q  1 aatgtgccaactcatgaactgtcacatgtactccgttagccaccatgacgtttttgttgacagaagctgacggcaaggactattttcaaaaggttaaaaa 100  Q
    ||||||||||||||||||||  ||| ||| |||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||||||| ||    
T  35785351 aatgtgccaactcatgaactaccacgtgtgctccgttagccaccatgatgtttttgttgacagaagttgacggcaaagactattttcaaaaggttaagaa 35785252  T
Q  101 gatacagggtttattttagnnnnnnnnnncttacagggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaagc 188  Q
    |||||| |||| |||||||          ||||||||||| ||||| ||||||   |||||||||||||| |||||||||||||||||    
T  35785251 gatacatggttcattttag--aaaaaaaacttacagggacaaaaacaaaaaatacgcgaacttacatggatcttttacatatttaagc 35785166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 23703733 - 23703924
Alignment:
Q  1 aatgtgccaactcatgaactgtcacatgtactccgttagccaccatgacgtttttgttgacagaagctgacggcaaggactattttcaaaaggttaaaaa 100  Q
    ||||||||||||||||||||| ||| ||| |||||||| |||| ||| |||||||||||||||||||||||| |||||| ||||||||||||||||| ||    
T  23703733 aatgtgccaactcatgaactgccacgtgtgctccgttaaccactatggcgtttttgttgacagaagctgacgacaaggaatattttcaaaaggttaagaa 23703832  T
Q  101 gatacagggtttattttag-nnnnnnnnnncttacagggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaagccta 191  Q
    |||| | |||| |||||||           |||||||||| ||||||||||||||  |||||||| | ||||||||||||||||||||||||    
T  23703833 gatagaaggttcattttagaagaaaaaaaacttacagggatgaaaaccaaaaatgcgcgaacttagagggaccttttacatatttaagccta 23703924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 22674340 - 22674154
Alignment:
Q  1 aatgtgccaactcatgaactgtcacatgtactccgttagccaccatgacgtttttgttgacagaagctgacggcaaggactattttcaaaaggttaaaaa 100  Q
    |||||||||||||||||  || ||| ||| |||||||||||||  || |||||||||||||||||||| || |||||||| |||||||||||||||| ||    
T  22674340 aatgtgccaactcatgacttgccacctgtgctccgttagccacagtggcgtttttgttgacagaagctaacagcaaggaccattttcaaaaggttaagaa 22674241  T
Q  101 gatacagggtttattttagnnnnnnnnnncttacagggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaag 187  Q
    |||||||||||||||||||          |||||| |||||||||| |||||||  |||||||| | ||||||||||||||||||||    
T  22674240 gatacagggtttattttagaaaaaaaaaacttacaaggacgaaaacaaaaaatgcgcgaacttatagggaccttttacatatttaag 22674154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 35786548 - 35786737
Alignment:
Q  1 aatgtgccaactcatgaactgtcacatgtactccgttagccaccatgacgtttttgttgacagaagctgacggcaaggactattttcaaaaggttaaaaa 100  Q
    |||||||||||||||||  || ||| ||| ||||||||| |||  || |||||||||||||||||||  ||||||||||| |||||||||||||||| ||    
T  35786548 aatgtgccaactcatgacttgccacctgtgctccgttaggcacagtggcgtttttgttgacagaagccaacggcaaggaccattttcaaaaggttaagaa 35786647  T
Q  101 gatacagggtttattttag---nnnnnnnnnncttacagggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaag 187  Q
     ||||||||||||||||||             |||||| ||||||||||||||||||  |||||||||| ||||||||||||||||||||    
T  35786648 tatacagggtttattttagaaagaaaaaaaaacttacaaggacgaaaaccaaaaatgcgcgaacttacagggaccttttacatatttaag 35786737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 31 - 191
Target Start/End: Original strand, 55019258 - 55019418
Alignment:
Q  31 ctccgttagccaccatgacgtttttgttgacagaagctgacggcaaggactattttcaaaaggttaaaaagatacagggtttattttagnnnnnnnnnnc 130  Q
    |||||| ||||||||||  |||||||||||| |||| |||||||||||||  |||  |||||||||  || ||||||||||| ||||||          |    
T  55019258 ctccgtaagccaccatggtgtttttgttgacggaagttgacggcaaggaccttttctaaaaggttatcaaaatacagggtttgttttagaacaaaaaaac 55019357  T
Q  131 ttacagggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaagccta 191  Q
    ||||||||| |||||| |||||||  |||| ||||| ||||| ||||||||||||||||||    
T  55019358 ttacagggaagaaaacaaaaaatgcgcgaaattacaaggaccatttacatatttaagccta 55019418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 72 - 188
Target Start/End: Complemental strand, 23702519 - 23702398
Alignment:
Q  72 ggcaaggactattttcaaaaggttaaaaagatacagggtttattttag-----nnnnnnnnnncttacagggacgaaaaccaaaaatgtacgaacttaca 166  Q
    ||||||||| |||||||||||||||| |||||||||||||||||||||               |||| |||||||||||| |||||||  ||||||||||    
T  23702519 ggcaaggaccattttcaaaaggttaagaagatacagggtttattttagaaaaaaaaaaaaaaacttatagggacgaaaacaaaaaatgcgcgaacttaca 23702420  T
Q  167 tggaccttttacatatttaagc 188  Q
     |||||||||||||||||||||    
T  23702419 aggaccttttacatatttaagc 23702398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 119
Target Start/End: Original strand, 38158505 - 38158619
Alignment:
Q  5 tgccaactcatgaactgtcacatgtactccgttagccaccatgacgtttttgttgacagaagctgacggcaaggactattttcaaaaggttaaaaagata 104  Q
    ||||||||||||||||||||| ||| |||  |||||||||||   ||||||||||||  ||| |||||||||||||  ||| ||||||||||   | |||    
T  38158505 tgccaactcatgaactgtcacgtgtgctctattagccaccatagtgtttttgttgacgaaagttgacggcaaggaccttttccaaaaggttatcgaaata 38158604  T
Q  105 cagggtttattttag 119  Q
    |||||||| ||||||    
T  38158605 cagggtttgttttag 38158619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 191
Target Start/End: Complemental strand, 2671598 - 2671539
Alignment:
Q  132 tacagggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaagccta 191  Q
    ||||||||| |||||||||||||  |||||||||| ||||||||| | ||||||||||||    
T  2671598 tacagggactaaaaccaaaaatgcgcgaacttacagggacctttttcttatttaagccta 2671539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 191
Target Start/End: Complemental strand, 22307728 - 22307669
Alignment:
Q  132 tacagggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaagccta 191  Q
    ||||||||| |||||||||||  | |||||||||| ||||||||| ||||||||||||||    
T  22307728 tacagggactaaaaccaaaaacatgcgaacttacagggaccttttgcatatttaagccta 22307669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 188
Target Start/End: Original strand, 33609346 - 33609402
Alignment:
Q  132 tacagggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaagc 188  Q
    |||| ||||||||||||||||    |||||||||| |||||||||||||||||||||    
T  33609346 tacaaggacgaaaaccaaaaacacgcgaacttacagggaccttttacatatttaagc 33609402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 191
Target Start/End: Complemental strand, 34538183 - 34538124
Alignment:
Q  132 tacagggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaagccta 191  Q
    |||| |||| ||||||||||| || | |||||||  ||||||||||||||||||||||||    
T  34538183 tacaaggactaaaaccaaaaacgtgctaacttaccgggaccttttacatatttaagccta 34538124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 119
Target Start/End: Complemental strand, 39665422 - 39665344
Alignment:
Q  41 caccatgacgtttttgttgacagaagctgacggcaaggactattttcaaaaggttaaaaagatacagggtttattttag 119  Q
    ||||||| | |||||||||||| |||||||||  ||||||| ||| ||||||||||  || ||||| ||||| ||||||    
T  39665422 caccatggcatttttgttgacaaaagctgacgataaggactttttccaaaaggttatcaaaatacaaggtttgttttag 39665344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 191
Target Start/End: Complemental strand, 54535034 - 54534976
Alignment:
Q  133 acagggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaagccta 191  Q
    ||||||||||||||||||||    |||||||||||||||  ||||||||||||| ||||    
T  54535034 acagggacgaaaaccaaaaacacgcgaacttacatggacgatttacatatttaaaccta 54534976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 191
Target Start/End: Original strand, 2672963 - 2673024
Alignment:
Q  130 cttacagggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaagccta 191  Q
    |||||| |||| |||||||||||||  | ||||||||| || ||||||| ||||||||||||    
T  2672963 cttacaaggactaaaaccaaaaatgcgccaacttacatagatcttttacttatttaagccta 2673024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 187
Target Start/End: Complemental strand, 28426892 - 28426836
Alignment:
Q  131 ttacagggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaag 187  Q
    ||||| |||| ||||| |||||||  | |||||||||||||||||||| ||||||||    
T  28426892 ttacaaggactaaaacaaaaaatgcgccaacttacatggaccttttacttatttaag 28426836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 186
Target Start/End: Complemental strand, 39665322 - 39665274
Alignment:
Q  138 gacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaa 186  Q
    ||||||||| |||||||  |||||||||| ||||| |||||||||||||    
T  39665322 gacgaaaacaaaaaatgcgcgaacttacagggaccatttacatatttaa 39665274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 91; Significance: 3e-44; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 842374 - 842186
Alignment:
Q  1 aatgtgccaactcatgaactgtcacatgtactccgttagccaccatgacgtttttgttgacagaagctgacggcaaggactattttcaaaaggttaaaaa 100  Q
    ||||||||||||||| |  || ||| ||| |||||||||||||  || |||||||||||||||||||| ||||||||||| |||||||||||||||| ||    
T  842374 aatgtgccaactcataacttgccacctgtgctccgttagccacagtggcgtttttgttgacagaagctaacggcaaggaccattttcaaaaggttaagaa 842275  T
Q  101 gatacagggtttattttagnnnnnnnnnncttacagggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaagcc 189  Q
    |||||||||||||||||||          ||||||||||||||||| |||||||  |||||||||| ||||||| ||||||||||||||    
T  842274 gatacagggtttattttagaaaaaaaaaacttacagggacgaaaacaaaaaatgcgcgaacttacagggaccttatacatatttaagcc 842186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 32 - 190
Target Start/End: Original strand, 843422 - 843581
Alignment:
Q  32 tccgttagccaccatgacgtttttgttgacagaagctgacggcaaggactattttcaaaaggttaaaaagatacagggtttattttagnnnnnnnnnnct 131  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |||||||          ||    
T  843422 tccgttagccaccatggcgtttttgttgacagaagctgacggcaaggactattttcaaaaggttgagaagatacagggttcattttagaaaaaaaaaact 843521  T
Q  132 tacagggacg-aaaaccaaaaatgtacgaacttacatggaccttttacatatttaagcct 190  Q
    | |||||||| |||||||||||||  |||||||||| |||||||||||||||||||||||    
T  843522 tgcagggacgaaaaaccaaaaatgcgcgaacttacagggaccttttacatatttaagcct 843581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 20773312 - 20773500
Alignment:
Q  1 aatgtgccaactcatgaactgtcacatgtactccgttagccaccatgacgtttttgttgacagaagctgacggcaaggactattttcaaaaggttaaaaa 100  Q
    ||||||||||||||||| ||| ||| ||| |||| |||||||| ||| | |||||||||||||||| ||||||||||||| |||||||||||||||| ||    
T  20773312 aatgtgccaactcatgacctgccacctgtgctccattagccacaatggcatttttgttgacagaaggtgacggcaaggaccattttcaaaaggttaagaa 20773411  T
Q  101 gatacagggtttattttagnnnnnnnnnncttacagggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaagcc 189  Q
    |||||| ||||||||||||          |||||||||| |||||| |||||||  | |||||| |  |||||||||||||||||||||    
T  20773412 gatacaaggtttattttagaaaaataaaacttacagggatgaaaacaaaaaatgcgcaaacttatagagaccttttacatatttaagcc 20773500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 5 - 191
Target Start/End: Original strand, 19401996 - 19402183
Alignment:
Q  5 tgccaactcatgaactgtcacatgtactccgttagccaccatgacgtttttgttgacagaagctgacggcaaggactattttcaaaaggttaaaaagata 104  Q
    |||||||||||   ||| ||| ||| ||||||||||||| ||| | |||||||||||| |||||||||||||||||  ||||||||||||||  ||||||    
T  19401996 tgccaactcattgcctgccacctgtgctccgttagccacaatggcatttttgttgacataagctgacggcaaggacctttttcaaaaggttatgaagata 19402095  T
Q  105 cagggtttattttag-nnnnnnnnnncttacagggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaagccta 191  Q
    || ||||||||||||           ||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||||    
T  19402096 caaggtttattttagagaaaaaaaatcttacagggacgaaaacaaaaaatgtgcgaacttacaaggaccttttacatatttaagccta 19402183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 5 - 190
Target Start/End: Original strand, 11065528 - 11065714
Alignment:
Q  5 tgccaactcatgaactgtcacatgtactccgttagccaccatgacgtttttgttgacagaagctgacggcaaggactattttcaaaaggttaaaaagata 104  Q
    |||||||||||   ||| ||| ||| ||||||||||||| ||| |||||||||| |||||||||||||||||||||  ||||||||| ||||  ||||||    
T  11065528 tgccaactcattgcctgccacctgtcctccgttagccacaatggcgtttttgttaacagaagctgacggcaaggacctttttcaaaatgttatgaagata 11065627  T
Q  105 cagggtttattttag-nnnnnnnnnncttacagggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaagcct 190  Q
    || ||||| ||||||           |||||||||||||||||||||||||  |||||||||| |||||||||||||||||||||||    
T  11065628 caaggtttgttttagaaaaaaaaaatcttacagggacgaaaaccaaaaatgcgcgaacttacaaggaccttttacatatttaagcct 11065714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 5 - 186
Target Start/End: Original strand, 30321039 - 30321220
Alignment:
Q  5 tgccaactcatgaactgtcacatgtactccgttagccaccatgacgtttttgttgacagaagctgacggcaaggactattttcaaaaggttaaaaagata 104  Q
    |||||||||||   ||| ||| ||| ||||||||||||| |||  ||||||||| |||||||||||||||||||||  ||||||||| ||||  ||||||    
T  30321039 tgccaactcattgcctgccacctgtcctccgttagccacaatggtgtttttgttaacagaagctgacggcaaggacctttttcaaaatgttatgaagata 30321138  T
Q  105 cagggtttattttagnnnnnnnnnncttacagggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaa 186  Q
    || ||||| ||||||          ||||||||||||||||||||||||| |||||||||||  ||||||||||||||||||    
T  30321139 caaggtttgttttagaaaaaaaaatcttacagggacgaaaaccaaaaatgcacgaacttacagagaccttttacatatttaa 30321220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 7 - 191
Target Start/End: Original strand, 19597854 - 19598038
Alignment:
Q  7 ccaactcatgaactgtcacatgtactccgttagccaccatgacgtttttgttgacagaagctgacggcaaggactattttcaaaaggttaaaaagataca 106  Q
    ||||||||||| ||| ||| ||| ||||||||||||||||| ||||||||||||| ||||||||||||||||||  ||| ||||||||||  || |||||    
T  19597854 ccaactcatgatctgccacgtgtgctccgttagccaccatggcgtttttgttgacggaagctgacggcaaggaccttttccaaaaggttatcaaaataca 19597953  T
Q  107 gggtttattttagnnnnnnnnnncttacagggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaagccta 191  Q
    |||||| ||||||          ||| || |||| |||||||||||||  || ||||||| ||||| ||||||||||||||||||    
T  19597954 gggtttgttttagaacaaaaaaacttgcaaggaccaaaaccaaaaatgcgcggacttacagggaccatttacatatttaagccta 19598038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 31 - 190
Target Start/End: Complemental strand, 19596501 - 19596342
Alignment:
Q  31 ctccgttagccaccatgacgtttttgttgacagaagctgacggcaaggactattttcaaaaggttaaaaagatacagggtttattttagnnnnnnnnnnc 130  Q
    |||||||||||||||  |||||||||||||| |||||||| |||||||||  ||||||||||||||  || ||||||||||| ||||||          |    
T  19596501 ctccgttagccaccaaaacgtttttgttgacggaagctgatggcaaggacctttttcaaaaggttatcaaaatacagggtttgttttagaacaaaaaaac 19596402  T
Q  131 ttacagggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaagcct 190  Q
    ||||| |||| |||||||||||||  |||||||| | ||||  |||||||||||||||||    
T  19596401 ttacaaggaccaaaaccaaaaatgcgcgaacttatagggacaatttacatatttaagcct 19596342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 5 - 191
Target Start/End: Complemental strand, 7796935 - 7796747
Alignment:
Q  5 tgccaactcatgaactgtcacatgtactccgttagccaccatgacgtttttgttgacagaagctgacggcaaggactattttcaaaaggttaaaaagata 104  Q
    |||||||||||   ||| ||| ||| ||| ||||||||| ||| |||||||||| |||||||||||| ||||||||  ||| |||||| |||| ||||||    
T  7796935 tgccaactcattgtctgccacctgtgctctgttagccacaatggcgtttttgttaacagaagctgacagcaaggacc-tttccaaaagtttaagaagata 7796837  T
Q  105 cagggtttattttagnnnnnnnnnn---cttacagggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaagccta 191  Q
     | ||||||||||||             ||||||||||| |||||||||||||  |||||||||  ||||||||||||||||||||||||    
T  7796836 aaaggtttattttagaaagaaaaaaaatcttacagggacaaaaaccaaaaatgcgcgaacttactgggaccttttacatatttaagccta 7796747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 35 - 190
Target Start/End: Complemental strand, 19580046 - 19579891
Alignment:
Q  35 gttagccaccatgacgtttttgttgacagaagctgacggcaaggactattttcaaaaggttaaaaagatacagggtttattttagnnnnnnnnnncttac 134  Q
    |||||||||||  |||||||||||||| |||||||||| |||||||  ||| ||||||||||  || ||||||||||| ||||||          |||||    
T  19580046 gttagccaccaaaacgtttttgttgacggaagctgacgacaaggaccttttccaaaaggttatcaaaatacagggtttgttttagaacaaaaaaacttac 19579947  T
Q  135 agggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaagcct 190  Q
    | |||| |||||||||||||  |||||||| | ||| | |||||||||||||||||    
T  19579946 aaggaccaaaaccaaaaatgcgcgaacttatacggagcatttacatatttaagcct 19579891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 5 - 190
Target Start/End: Complemental strand, 12600081 - 12599896
Alignment:
Q  5 tgccaactcatgaactgtcacatgtactccgttagccaccatgacgtttttgttgacagaagctgacggcaaggactattttcaaaaggttaaaaagata 104  Q
    ||||||||||||||||| ||  ||| ||||||||| |||| ||  ||||||||||||  ||| |||||||||||||  ||| ||||||||||  || |||    
T  12600081 tgccaactcatgaactgccatgtgtgctccgttagtcaccgtggtgtttttgttgacgaaagttgacggcaaggaccttttccaaaaggttagcaaaata 12599982  T
Q  105 cagggtttattttagnnnnnnnnnncttacagggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaagcct 190  Q
    |||||||| |||||           |||| |||||||||||| |||||||| |||| ||||| | |||  ||||||||||||||||    
T  12599981 cagggtttgttttataacaaaaaaacttaaagggacgaaaacaaaaaatgtgcgaaattacaggaaccacttacatatttaagcct 12599896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 5 - 189
Target Start/End: Original strand, 7800113 - 7800296
Alignment:
Q  5 tgccaactcatgaactgtcacatgtactccgttagccaccatgacgtttttgttgacagaagctgacggcaaggactattttcaaaaggttaaaaagata 104  Q
    |||||||||||   ||| ||| ||| ||||||||||||| ||| |||||||||| ||| ||||||| |||||| ||  ||| |||||| |||| || |||    
T  7800113 tgccaactcattgtctgccacctgtgctccgttagccacaatggcgtttttgttaacataagctgatggcaagaaccttttccaaaagtttaagaatata 7800212  T
Q  105 cagggtttattttagnnnnnnnnnncttacagggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaagcc 189  Q
    || ||||||||||||          ||||||||||||||||| |||| ||  |||||||||||  | ||||||||||||||||||    
T  7800213 caaggtttattttag-aaaaaaaatcttacagggacgaaaacaaaaattgcgcgaacttacataaatcttttacatatttaagcc 7800296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 189
Target Start/End: Complemental strand, 1443474 - 1443417
Alignment:
Q  132 tacagggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaagcc 189  Q
    |||||||||||||||||||||     ||||||||| |||||||| |||||||||||||    
T  1443474 tacagggacgaaaaccaaaaacacgtgaacttacagggacctttcacatatttaagcc 1443417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 90; Significance: 1e-43; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 358166 - 357975
Alignment:
Q  1 aatgtgccaactcatgaactgtcacatgtactccgttagccaccatgacgtttttgttgacagaagctgacggcaaggactattttcaaaaggttaaaaa 100  Q
    ||||||||||||||| |  || ||| ||| |||||||||||||  || |||||||||||||||||||||||||||||||| |||||||||||||||| ||    
T  358166 aatgtgccaactcataacttgccacctgtgctccgttagccacagtggcgtttttgttgacagaagctgacggcaaggaccattttcaaaaggttaagaa 358067  T
Q  101 gatacagggtttattttag-nnnnnnnnnncttacagggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaagccta 191  Q
    |||||| ||| ||||||||           |||||||||||||||||||||||||  |||||||||| ||||||||||||||||||||||||    
T  358066 gatacaaggtctattttagaaaaaaaaaaacttacagggacgaaaaccaaaaatgcgcgaacttacagggaccttttacatatttaagccta 357975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 21143899 - 21144015
Alignment:
Q  1 aatgtgccaactcatgaactgtcacatgtactccgttagccaccatgacgtttttgttgacagaagctgacggcaaggactattttcaaaaggttaaaaa 100  Q
    ||||||||||||||| ||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||    
T  21143899 aatgtgccaactcataaactgccacgtgtgctccgttagccaccatgacgtttttgttgacagaagctgacgacaaggactattttcaaaaagttaagaa 21143998  T
Q  101 gatacagggtttatttt 117  Q
    |||||| |||| |||||    
T  21143999 gatacatggttcatttt 21144015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 32 - 190
Target Start/End: Original strand, 359215 - 359374
Alignment:
Q  32 tccgttagccaccatgacgtttttgttgacagaagctgacggcaaggactattttcaaaaggttaaaaagatacagggtttattttag-nnnnnnnnnnc 130  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |||| |||||||                
T  359215 tccgttagccaccatggcgtttttgttgacagaagctgacggcaaggactattttcaaaaggttgagaagatacatggttcattttagaaagaaaaaaaa 359314  T
Q  131 ttacagggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaagcct 190  Q
    || ||||||||||||| |||||||  |||||||||| |||||||||||||||||||||||    
T  359315 ttgcagggacgaaaacaaaaaatgcgcgaacttacagggaccttttacatatttaagcct 359374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 21142664 - 21142480
Alignment:
Q  1 aatgtgccaactcatgaactgtcacatgtactccgttagccaccatgacgtttttgttgacagaagctgacggcaaggactattttcaaaaggttaaaaa 100  Q
    |||||| ||||||||||  || ||| ||| ||||||||||||| ||||||||||||||||||||||| |    ||||||| |||||||||||||||| ||    
T  21142664 aatgtgtcaactcatgacttgccacctgtgctccgttagccacaatgacgtttttgttgacagaagcag----caaggaccattttcaaaaggttaagaa 21142569  T
Q  101 gatacagggtttattttag-nnnnnnnnnncttacagggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaagc 188  Q
    |||||||||||||||||||            ||||| |||||||||| |||||||  |||||||||| |||||||||||||||||||||    
T  21142568 gatacagggtttattttagaagaaaaaaaaattacaaggacgaaaacaaaaaatgcgcgaacttacagggaccttttacatatttaagc 21142480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 133 - 191
Target Start/End: Original strand, 37964645 - 37964703
Alignment:
Q  133 acagggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaagccta 191  Q
    |||||||||||||| ||||||| || || ||||| ||||||||||| ||||||||||||    
T  37964645 acagggacgaaaacaaaaaatgcactaaattacagggaccttttacgtatttaagccta 37964703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 130 - 191
Target Start/End: Complemental strand, 7272959 - 7272898
Alignment:
Q  130 cttacagggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaagccta 191  Q
    ||||||||||| |||||||||||||  | ||||||||  |||||||||| ||||||||||||    
T  7272959 cttacagggactaaaaccaaaaatgcgccaacttacagagaccttttacttatttaagccta 7272898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 96
Target Start/End: Complemental strand, 37963415 - 37963367
Alignment:
Q  48 acgtttttgttgacagaagctgacggcaaggactattttcaaaaggtta 96  Q
    |||||||||||||| ||| |||||||||||||| ||| |||||||||||    
T  37963415 acgtttttgttgacggaacctgacggcaaggacgattatcaaaaggtta 37963367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 191
Target Start/End: Original strand, 3158039 - 3158098
Alignment:
Q  132 tacagggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaagccta 191  Q
    |||||||||||||||||||||    |||||||||| ||||  ||||||||||||||||||    
T  3158039 tacagggacgaaaaccaaaaacacgcgaacttacagggacgatttacatatttaagccta 3158098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 191
Target Start/End: Original strand, 39886078 - 39886137
Alignment:
Q  132 tacagggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaagccta 191  Q
    ||||||||| |||||||||||    |||||||||| ||||| ||||||||||||||||||    
T  39886078 tacagggactaaaaccaaaaacacgcgaacttacagggaccatttacatatttaagccta 39886137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 190
Target Start/End: Original strand, 22714051 - 22714109
Alignment:
Q  132 tacagggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaagcct 190  Q
    |||||||||||||||||||||   ||||||||||| || |  |||||||||||||||||    
T  22714051 tacagggacgaaaaccaaaaacacacgaacttacaggggcgatttacatatttaagcct 22714109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 119
Target Start/End: Original strand, 37964568 - 37964638
Alignment:
Q  49 cgtttttgttgacagaagctgacggcaaggactattttcaaaaggttaaaaagatacagggtttattttag 119  Q
    ||||||||||||| ||| ||||||||| |||| |||| |||||||||| ||| ||||| || || ||||||    
T  37964568 cgtttttgttgacggaacctgacggcagggacgatttccaaaaggttacaaaaatacaagggttgttttag 37964638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 190
Target Start/End: Complemental strand, 39884673 - 39884615
Alignment:
Q  132 tacagggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaagcct 190  Q
    ||||||||| |||||||||||    |||||||||| ||||| |||||||||||||||||    
T  39884673 tacagggactaaaaccaaaaacacgcgaacttacagggaccatttacatatttaagcct 39884615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 191
Target Start/End: Original strand, 17707448 - 17707509
Alignment:
Q  130 cttacagggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaagccta 191  Q
    ||||||||||| |||||||||||    | || ||||||||||| ||||||||||||||||||    
T  17707448 cttacagggactaaaaccaaaaacacgctaaattacatggaccatttacatatttaagccta 17707509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 190
Target Start/End: Complemental strand, 36899957 - 36899897
Alignment:
Q  130 cttacagggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaagcct 190  Q
    ||||||||||| |||||||||||    | || ||||| |||||||||||||||||||||||    
T  36899957 cttacagggactaaaaccaaaaacacgctaaattacagggaccttttacatatttaagcct 36899897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 189
Target Start/End: Original strand, 45448499 - 45448551
Alignment:
Q  137 ggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaagcc 189  Q
    ||||||||||||||||    |||||||| | ||||||||||||||||||||||    
T  45448499 ggacgaaaaccaaaaacacgcgaacttagagggaccttttacatatttaagcc 45448551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 89; Significance: 5e-43; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 24613483 - 24613669
Alignment:
Q  1 aatgtgccaactcatgaactgtcacatgtactccgttagccaccatgacgtttttgttgacagaagctgacggcaaggactattttcaaaaggttaaaaa 100  Q
    ||||||||||||||| |  || ||| ||| |||||||||||||  || |||||||||||||||||||| ||||||||||| |||||||||||||||| ||    
T  24613483 aatgtgccaactcataacttgccacttgtgctccgttagccacagtggcgtttttgttgacagaagctaacggcaaggaccattttcaaaaggttaagaa 24613582  T
Q  101 gatacagggtttattttagnnnnnnnnnncttacagggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaag 187  Q
    |||| ||||||||||||||          ||||||||||||||||| |||||||  |||||||||| ||||||||||||||||||||    
T  24613583 gatatagggtttattttagaaaaaaaaaacttacagggacgaaaacaaaaaatgcgcgaacttacagggaccttttacatatttaag 24613669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 32 - 188
Target Start/End: Complemental strand, 24612434 - 24612279
Alignment:
Q  32 tccgttagccaccatgacgtttttgttgacagaagctgacggcaaggactattttcaaaaggttaaaaagatacagggtttattttagnnnnnnnnnnct 131  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |||||||          ||    
T  24612434 tccgttagccaccatggcgtttttgttgacagaagctgacggcaaggactattttcaaaaggttgagaagatacagggttcattttag-aaaaaaaaact 24612336  T
Q  132 tacagggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaagc 188  Q
    | ||| |||||||||||||||||  |||||||||| |||||||||||||||||||||    
T  24612335 tgcagagacgaaaaccaaaaatgcgcgaacttacagggaccttttacatatttaagc 24612279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 33781364 - 33781550
Alignment:
Q  1 aatgtgccaactcatgaactgtcacatgtactccgttagccaccatgacgtttttgttgacagaagctgacggcaaggactattttcaaaaggttaaaaa 100  Q
    |||||||||||||||||  || ||||||| ||||||||||||| ||| |||||||||||||||||||| ||||||||||| |||||||||||||||| ||    
T  33781364 aatgtgccaactcatgacttgccacatgtgctccgttagccacaatggcgtttttgttgacagaagctaacggcaaggaccattttcaaaaggttaagaa 33781463  T
Q  101 gatacagggtttattttag-nnnnnnnnnncttacagggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaa 186  Q
    |||||| ||||||||||||            ||||| |||||||||| ||||| |  |||||||||| |||||||||||||||||||    
T  33781464 gatacaaggtttattttagaaagaaaaaaaattacaaggacgaaaacaaaaaacgcgcgaacttacagggaccttttacatatttaa 33781550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 5 - 189
Target Start/End: Complemental strand, 31199432 - 31199249
Alignment:
Q  5 tgccaactcatgaactgtcacatgtactccgttagccaccatgacgtttttgttgacagaagctgacggcaaggactattttcaaaaggttaaaaagata 104  Q
    ||||||||||||| ||| ||| ||| |||||||||||| |||| ||||||||||||| ||| ||||||||||||||  || |||||||| ||  || |||    
T  31199432 tgccaactcatgatctgccacgtgtgctccgttagccagcatggcgtttttgttgacggaatctgacggcaaggacctttatcaaaagg-tatcaaaata 31199334  T
Q  105 cagggtttattttagnnnnnnnnnncttacagggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaagcc 189  Q
    || ||||| ||||||          |||||||||||||||||| |||||   |||| ||||| |||||||||||||||| |||||    
T  31199333 caaggtttgttttaggacaaaaaaacttacagggacgaaaacctaaaatacgcgaaattacagggaccttttacatattcaagcc 31199249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 56 - 117
Target Start/End: Complemental strand, 33780796 - 33780735
Alignment:
Q  56 gttgacagaagctgacggcaaggactattttcaaaaggttaaaaagatacagggtttatttt 117  Q
    ||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |||||    
T  33780796 gttgacagaagctgacggcaaggactatttttaaaaggttaagaagatacagggttcatttt 33780735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 31 - 119
Target Start/End: Original strand, 31200847 - 31200934
Alignment:
Q  31 ctccgttagccaccatgacgtttttgttgacagaagctgacggcaaggactattttcaaaaggttaaaaagatacagggtttattttag 119  Q
    |||||||||||||||    |||||||||||| ||||||||||||||||||  |||||||||||||| ||| ||||||||||| ||||||    
T  31200847 ctccgttagccaccagagtgtttttgttgacggaagctgacggcaaggacctttttcaaaaggttataaa-atacagggtttgttttag 31200934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 132 - 190
Target Start/End: Complemental strand, 41081859 - 41081801
Alignment:
Q  132 tacagggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaagcct 190  Q
    |||||||||||||||||||||    |||||||||| |||||||||||||||||||||||    
T  41081859 tacagggacgaaaaccaaaaacacgcgaacttacagggaccttttacatatttaagcct 41081801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 130 - 190
Target Start/End: Original strand, 3026881 - 3026941
Alignment:
Q  130 cttacagggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaagcct 190  Q
    ||||||||||| ||||||||||| || | |||||||| ||||||||||| |||||||||||    
T  3026881 cttacagggactaaaaccaaaaacgtgccaacttacagggaccttttacttatttaagcct 3026941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 131 - 191
Target Start/End: Complemental strand, 32558977 - 32558917
Alignment:
Q  131 ttacagggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaagccta 191  Q
    |||||||||||||||| |||||    |||||||||| ||||||||||||||||||||||||    
T  32558977 ttacagggacgaaaacaaaaaacacgcgaacttacagggaccttttacatatttaagccta 32558917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 136 - 190
Target Start/End: Original strand, 40499258 - 40499312
Alignment:
Q  136 gggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaagcct 190  Q
    |||||||||||||||||    |||||||||| |||||||||||||||||||||||    
T  40499258 gggacgaaaaccaaaaacacgcgaacttacagggaccttttacatatttaagcct 40499312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 130 - 191
Target Start/End: Original strand, 5387255 - 5387316
Alignment:
Q  130 cttacagggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaagccta 191  Q
    ||||||||||| ||||||||||||| || || ||||| |||||||| || ||||||||||||    
T  5387255 cttacagggactaaaaccaaaaatgcaccaatttacagggacctttcacttatttaagccta 5387316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 136 - 189
Target Start/End: Original strand, 31796840 - 31796893
Alignment:
Q  136 gggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaagcc 189  Q
    |||||||||||||||||    |||||||||| ||||||||||||||||||||||    
T  31796840 gggacgaaaaccaaaaacacgcgaacttacagggaccttttacatatttaagcc 31796893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 190
Target Start/End: Complemental strand, 33780716 - 33780656
Alignment:
Q  130 cttacagggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaagcct 190  Q
    ||||||||||||||||| ||||||   |||||||||| |||| |||||||| |||||||||    
T  33780716 cttacagggacgaaaacaaaaaatacgcgaacttacagggacattttacatttttaagcct 33780656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 191
Target Start/End: Original strand, 3150021 - 3150080
Alignment:
Q  132 tacagggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaagccta 191  Q
    ||||||||| ||||||||||| |    |||||||| ||||||||||||||||||||||||    
T  3150021 tacagggactaaaaccaaaaacgcgttaacttacagggaccttttacatatttaagccta 3150080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 196
Target Start/End: Original strand, 32559910 - 32559949
Alignment:
Q  157 cgaacttacatggaccttttacatatttaagcctactata 196  Q
    ||||||||||  ||||||||||||||||||||||||||||    
T  32559910 cgaacttacagagaccttttacatatttaagcctactata 32559949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 191
Target Start/End: Original strand, 41083277 - 41083332
Alignment:
Q  136 gggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaagccta 191  Q
    |||||||||||||||||    | |||||||| ||||||||||||||||||||||||    
T  41083277 gggacgaaaaccaaaaacacgcaaacttacagggaccttttacatatttaagccta 41083332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 189
Target Start/End: Complemental strand, 32613941 - 32613883
Alignment:
Q  132 tacagggacgaaaaccaaaaatgtacgaactt-acatggaccttttacatatttaagcc 189  Q
    |||||||||||||||||||||    ||||||| ||| ||||||||||||||||||||||    
T  32613941 tacagggacgaaaaccaaaaacacgcgaactttacaaggaccttttacatatttaagcc 32613883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 190
Target Start/End: Complemental strand, 48567053 - 48566995
Alignment:
Q  132 tacagggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaagcct 190  Q
    ||||| |||||||||||||||    | |||||||| |||||||||||||||||||||||    
T  48567053 tacagtgacgaaaaccaaaaacacgcaaacttacagggaccttttacatatttaagcct 48566995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 96
Target Start/End: Original strand, 27320618 - 27320663
Alignment:
Q  51 tttttgttgacagaagctgacggcaaggactattttcaaaaggtta 96  Q
    ||||||||||| ||| |||||||||||||| |||| ||||||||||    
T  27320618 tttttgttgacggaacctgacggcaaggacgatttccaaaaggtta 27320663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 96
Target Start/End: Original strand, 27362376 - 27362421
Alignment:
Q  51 tttttgttgacagaagctgacggcaaggactattttcaaaaggtta 96  Q
    ||||||||||| ||| ||||||||||| || |||||||||||||||    
T  27362376 tttttgttgacggaatctgacggcaagtacaattttcaaaaggtta 27362421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 189
Target Start/End: Complemental strand, 31795430 - 31795373
Alignment:
Q  132 tacagggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaagcc 189  Q
    ||||||| |||||||||||||    |||||||||| ||||||||||| ||||||||||    
T  31795430 tacagggccgaaaaccaaaaacacgcgaacttacagggaccttttacgtatttaagcc 31795373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 189
Target Start/End: Original strand, 48568536 - 48568589
Alignment:
Q  136 gggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaagcc 189  Q
    |||||||||||||||||    ||||||||||  |||||||||||||||||||||    
T  48568536 gggacgaaaaccaaaaacacgcgaacttacagagaccttttacatatttaagcc 48568589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 189
Target Start/End: Complemental strand, 55196631 - 55196574
Alignment:
Q  132 tacagggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaagcc 189  Q
    |||| |||| |||||||||||||  |||||||||| ||||||||| | ||||||||||    
T  55196631 tacatggactaaaaccaaaaatgcgcgaacttacaaggacctttttcttatttaagcc 55196574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 190
Target Start/End: Original strand, 25529917 - 25529977
Alignment:
Q  130 cttacagggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaagcct 190  Q
    |||| |||||| ||||||||||| |  | |||||||| ||||||||||| |||||||||||    
T  25529917 cttatagggactaaaaccaaaaacgcgccaacttacaaggaccttttacttatttaagcct 25529977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 89; Significance: 5e-43; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 32 - 191
Target Start/End: Complemental strand, 26734585 - 26734424
Alignment:
Q  32 tccgttagccaccatgacgtttttgttgacagaagctgacggcaaggactattttcaaaaggttaaaaagatacagggtttatttt--agnnnnnnnnnn 129  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |||||  |               
T  26734585 tccgttagccaccatggcgtttttgttgacagaagctgacggcaaggactattttcaaaaggttgagaagatacagggttcattttaaaagaaaaaaaaa 26734486  T
Q  130 cttacagggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaagccta 191  Q
    ||| |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  26734485 cttgcagggacgaaaaccaaaaatgcgcgaacttacatggaccttttacatatttaagccta 26734424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 5 - 190
Target Start/End: Original strand, 8323314 - 8323499
Alignment:
Q  5 tgccaactcatgaactgtcacatgtactccgttagccaccatgacgtttttgttgacagaagctgacggcaaggactattttcaaaaggttaaaaagata 104  Q
    |||||||||||   ||| ||| ||| ||||||||||||| ||| |||||||||| |||||||||||||| ||||||  ||||||||| |||| |||||||    
T  8323314 tgccaactcattgcctgccacttgtcctccgttagccacaatggcgtttttgttaacagaagctgacggtaaggacctttttcaaaatgttataaagata 8323413  T
Q  105 cagggtttattttagnnnnnnnnnncttacagggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaagcct 190  Q
    || ||| | ||||||          |||||||||||||||||||||||||  |||||||||| |||||||||||||||||||||||    
T  8323414 caaggtctgttttagaaaaaaaaatcttacagggacgaaaaccaaaaatgcgcgaacttacagggaccttttacatatttaagcct 8323499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 5 - 190
Target Start/End: Original strand, 31815645 - 31815830
Alignment:
Q  5 tgccaactcatgaactgtcacatgtactccgttagccaccatgacgtttttgttgacagaagctgacggcaaggactattttcaaaaggttaaaaagata 104  Q
    |||||||||||   ||| ||| ||| |||||||||||||  || |||||||||| |||||||||||||||||||||  ||||||||| ||||  ||||||    
T  31815645 tgccaactcattgcctgccacctgtcctccgttagccacagtggcgtttttgttaacagaagctgacggcaaggacctttttcaaaatgttatgaagata 31815744  T
Q  105 cagggtttattttagnnnnnnnnnncttacagggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaagcct 190  Q
    || ||||| ||| ||          |||||||||||||||||||||||||  |||||||||| |||||||||||||||||||||||    
T  31815745 caaggtttgtttcagaaaaaaaaatcttacagggacgaaaaccaaaaatgcgcgaacttacagggaccttttacatatttaagcct 31815830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 5 - 190
Target Start/End: Complemental strand, 52793888 - 52793703
Alignment:
Q  5 tgccaactcatgaactgtcacatgtactccgttagccaccatgacgtttttgttgacagaagctgacggcaaggactattttcaaaaggttaaaaagata 104  Q
    |||||||||| |||||| ||| ||| || ||||| |||||||||||||||||||||| |||||||| |||||||||  ||| ||||| ||||  || |||    
T  52793888 tgccaactcaggaactgccacgtgtgcttcgttaaccaccatgacgtttttgttgacggaagctgaaggcaaggaccttttccaaaatgttagcaaaata 52793789  T
Q  105 cagggtttattttagnnnnnnnnnncttacagggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaagcct 190  Q
    |||||||| ||||||          ||||||||||||||||| |||||||  |||||||||| |||||||| ||||||||||||||    
T  52793788 cagggtttgttttagaacaaagaaacttacagggacgaaaacaaaaaatgagcgaacttacagggacctttaacatatttaagcct 52793703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 42301488 - 42301605
Alignment:
Q  1 aatgtgccaactcatgaactgtcacatgtactccgttagccaccatgacgtttttgttgacagaagctgacggcaaggactattttcaaaaggttaaaaa 100  Q
    |||||||||| |||||| ||| ||| ||| ||||||||||||| ||| |||||||||||||||||||||| || |||||| ||||||||||||| |||||    
T  42301488 aatgtgccaagtcatgacctgccacctgtgctccgttagccacaatggcgtttttgttgacagaagctgatggtaaggaccattttcaaaaggtcaaaaa 42301587  T
Q  101 gatacagggtttatttta 118  Q
    |||||| |||||||||||    
T  42301588 gatacaaggtttatttta 42301605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 40 - 190
Target Start/End: Original strand, 9627491 - 9627641
Alignment:
Q  40 ccaccatgacgtttttgttgacagaagctgacggcaaggactattttcaaaaggttaaaaagatacagggtttattttagnnnnnnnnnncttacaggga 139  Q
    ||||||||||||||||||||||  |||||||||||||||||  ||||||||||||||  || ||||||||||||||||||          |||||||| |    
T  9627491 ccaccatgacgtttttgttgacgaaagctgacggcaaggacctttttcaaaaggttagcaaaatacagggtttattttagaacaaaaaaacttacaggaa 9627590  T
Q  140 cgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaagcct 190  Q
    ||||||| |||||||  ||||||||||  ||||||||||||||||||||||    
T  9627591 cgaaaacaaaaaatgcgcgaacttacagagaccttttacatatttaagcct 9627641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 31 - 189
Target Start/End: Complemental strand, 8322678 - 8322521
Alignment:
Q  31 ctccgttagccaccatgacgtttttgttgacagaagctgacggcaaggactattttcaaaaggttaaaaagatacagggtttattttagnnnnnnnnnnc 130  Q
    ||||||||||||| ||| |||||||||| |||||||||||||||||||||  ||||||||| ||||  |||||||| ||||| ||||||          |    
T  8322678 ctccgttagccacaatggcgtttttgttaacagaagctgacggcaaggacctttttcaaaatgttatgaagatacaaggtttgttttag-aaaaaaaatc 8322580  T
Q  131 ttacagggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaagcc 189  Q
    |||||||||||||||| |||||||  |||||||||| ||||||||||||||||||||||    
T  8322579 ttacagggacgaaaacaaaaaatgcgcgaacttacagggaccttttacatatttaagcc 8322521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 5 - 190
Target Start/End: Complemental strand, 31810174 - 31809988
Alignment:
Q  5 tgccaactcatgaactgtcacatgtactccgttagccaccatgacgtttttgttgacagaagctgacggcaaggactattttcaaaaggttaaaaagata 104  Q
    |||||||||||   ||| ||| ||| ||||||||||||| ||| |||||||||| |||||||||||||||||||||  ||||||||| ||||  ||||||    
T  31810174 tgccaactcattgcctgccacctgtcctccgttagccacaatggcgtttttgttaacagaagctgacggcaaggacctttttcaaaatgttatgaagata 31810075  T
Q  105 cagggtttattttag-nnnnnnnnnncttacagggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaagcct 190  Q
    || ||||| ||| ||           ||||||||||||||||| |||||||  |||||||||| |||||||||||||||||||||||    
T  31810074 caaggtttgtttcagaaaaaaaaaatcttacagggacgaaaacaaaaaatgcgcgaacttacagggaccttttacatatttaagcct 31809988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 5 - 119
Target Start/End: Complemental strand, 42300637 - 42300523
Alignment:
Q  5 tgccaactcatgaactgtcacatgtactccgttagccaccatgacgtttttgttgacagaagctgacggcaaggactattttcaaaaggttaaaaagata 104  Q
    ||||||||||||||||| ||| ||| ||||||||||||||||| ||||||||||||| ||||||||||||||||||  ||| ||||||||||  || |||    
T  42300637 tgccaactcatgaactgccacgtgtgctccgttagccaccatggcgtttttgttgacggaagctgacggcaaggaccttttccaaaaggttagcaaaata 42300538  T
Q  105 cagggtttattttag 119  Q
    ||| |||| ||||||    
T  42300537 cagagtttgttttag 42300523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 9626658 - 9626469
Alignment:
Q  1 aatgtgccaactcatgaactgtcacatgtactccgttagccaccatgacgtttttgttgacagaagctgacggcaaggactattttcaaaaggttaaaaa 100  Q
    |||| ||||||||| || ||  ||| ||| |||| |||||||| ||  |||||||||||||||||||||||||||| |||  ||||||||||||||| ||    
T  9626658 aatgagccaactcacgacctaccacctgtgctccattagccacaatagcgtttttgttgacagaagctgacggcaatgaccgttttcaaaaggttaataa 9626559  T
Q  101 gatacagggtttattttag--nnnnnnnnnncttacagggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaagc 188  Q
    || | ||||||||||||||            ||||||||||||||||| ||||||   |||||||||| |||||||||||||||||||||    
T  9626558 gaaagagggtttattttagaagaaaaaaaaacttacagggacgaaaacaaaaaatacgcgaacttacagggaccttttacatatttaagc 9626469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 131 - 190
Target Start/End: Original strand, 43883806 - 43883865
Alignment:
Q  131 ttacagggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaagcct 190  Q
    |||||||||| ||||| ||||||| || |||||||||||||||||||| |||||||||||    
T  43883806 ttacagggactaaaacaaaaaatgcaccaacttacatggaccttttacttatttaagcct 43883865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 132 - 190
Target Start/End: Complemental strand, 12095934 - 12095876
Alignment:
Q  132 tacagggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaagcct 190  Q
    ||||||||| ||||||||||| | ||||||||||| ||||||||||| |||||||||||    
T  12095934 tacagggactaaaaccaaaaacgcacgaacttacagggaccttttacttatttaagcct 12095876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 130 - 191
Target Start/End: Complemental strand, 50315377 - 50315316
Alignment:
Q  130 cttacagggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaagccta 191  Q
    ||||||| |||||||||||||||    |||||||||| ||||||||||||||||||||||||    
T  50315377 cttacagagacgaaaaccaaaaacacgcgaacttacagggaccttttacatatttaagccta 50315316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 130 - 190
Target Start/End: Complemental strand, 28251990 - 28251930
Alignment:
Q  130 cttacagggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaagcct 190  Q
    |||||||||||||||||||||||||  | || ||||| ||||||||| |||||||||||||    
T  28251990 cttacagggacgaaaaccaaaaatgcgctaaattacagggaccttttgcatatttaagcct 28251930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 132 - 188
Target Start/End: Complemental strand, 31027282 - 31027226
Alignment:
Q  132 tacagggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaagc 188  Q
    ||||| || ||||| ||||||  ||||||||||||||||||||||||||||||||||    
T  31027282 tacagagaagaaaagcaaaaacatacgaacttacatggaccttttacatatttaagc 31027226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 191
Target Start/End: Original strand, 12097942 - 12098001
Alignment:
Q  132 tacagggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaagccta 191  Q
    ||||||||| |||||||||||||  |||||||||  ||||||||||| ||||||||||||    
T  12097942 tacagggactaaaaccaaaaatgcgcgaacttacggggaccttttacttatttaagccta 12098001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 191
Target Start/End: Complemental strand, 31034181 - 31034145
Alignment:
Q  155 tacgaacttacatggaccttttacatatttaagccta 191  Q
    ||||||||||||||||| |||||||||||||||||||    
T  31034181 tacgaacttacatggactttttacatatttaagccta 31034145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 190
Target Start/End: Complemental strand, 32847873 - 32847813
Alignment:
Q  130 cttacagggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaagcct 190  Q
    ||||||||||| ||||||||||| |  | |||||||| ||||||||||| |||||||||||    
T  32847873 cttacagggactaaaaccaaaaacgcgccaacttacagggaccttttacttatttaagcct 32847813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 191
Target Start/End: Original strand, 22684152 - 22684211
Alignment:
Q  132 tacagggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaagccta 191  Q
    |||| ||||||||||||||||    |||||||||| |||||||||||||||| |||||||    
T  22684152 tacatggacgaaaaccaaaaacacgcgaacttacaaggaccttttacatattaaagccta 22684211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 190
Target Start/End: Complemental strand, 24437131 - 24437073
Alignment:
Q  132 tacagggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaagcct 190  Q
    ||||| ||||||||| |||||    |||||||||| |||||||||||||||||||||||    
T  24437131 tacagtgacgaaaacaaaaaacacgcgaacttacagggaccttttacatatttaagcct 24437073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 189
Target Start/End: Complemental strand, 13222971 - 13222914
Alignment:
Q  132 tacagggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaagcc 189  Q
    |||| |||| ||||||||||| || | |||||||| ||||||||||| ||||||||||    
T  13222971 tacacggactaaaaccaaaaacgtgctaacttacagggaccttttacttatttaagcc 13222914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 196
Target Start/End: Complemental strand, 27524323 - 27524258
Alignment:
Q  131 ttacagggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaagcctactata 196  Q
    |||||||||| ||||| |||||||  | || ||| | |||||||||||||||||||||||| ||||    
T  27524323 ttacagggacaaaaacaaaaaatgcgctaaattatagggaccttttacatatttaagcctattata 27524258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 189
Target Start/End: Complemental strand, 46604496 - 46604439
Alignment:
Q  132 tacagggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaagcc 189  Q
    |||| ||||||||||||||||    | |||||||| ||||||||||||||||||||||    
T  46604496 tacaaggacgaaaaccaaaaacacgcaaacttacagggaccttttacatatttaagcc 46604439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 191
Target Start/End: Original strand, 9419847 - 9419879
Alignment:
Q  159 aacttacatggaccttttacatatttaagccta 191  Q
    |||||||| ||||||||||||||||||||||||    
T  9419847 aacttacaaggaccttttacatatttaagccta 9419879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 190
Target Start/End: Original strand, 11431329 - 11431389
Alignment:
Q  130 cttacagggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaagcct 190  Q
    ||||||||||| ||||| ||||| |  | |||||||| ||||||||||| |||||||||||    
T  11431329 cttacagggactaaaacgaaaaacgcgccaacttacagggaccttttacttatttaagcct 11431389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 190
Target Start/End: Original strand, 33755316 - 33755376
Alignment:
Q  130 cttacagggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaagcct 190  Q
    |||| ||| |||||||||||||    ||||||||||| ||||||||||| |||||||||||    
T  33755316 cttataggaacgaaaaccaaaatctcacgaacttacaaggaccttttacttatttaagcct 33755376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 84; Significance: 5e-40; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 42929121 - 42928937
Alignment:
Q  1 aatgtgccaactcatgaactgtcacatgtactccgttagccaccatgacgtttttgttgacagaagctgacggcaaggactattttcaaaaggttaaaaa 100  Q
    |||||||||||||||||  || ||| | | |||||||||||| |||| ||||||| ||||||||||||||| ||||||||||||||||||||||||| ||    
T  42929121 aatgtgccaactcatgacttgccacctttgctccgttagccatcatggcgttttttttgacagaagctgacagcaaggactattttcaaaaggttaagaa 42929022  T
Q  101 gatacagggtttattttagnnnnnnnnnncttacagggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaag 187  Q
    |||||||||||||||||||          |||||| | ||||||||||||||||  ||||||||||  |||||||||||||||||||    
T  42929021 gatacagggtttattttag--aaaaaaaacttacatgaacgaaaaccaaaaatgcgcgaacttacagagaccttttacatatttaag 42928937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 10344176 - 10343988
Alignment:
Q  1 aatgtgccaactcatgaactgtcacatgtactccgttagccaccatga--cgtttttgttgacagaagctgacggcaaggactattttcaaaaggttaaa 98  Q
    ||||||||||||||||| ||| ||| ||| ||||||||||||| |||   | |||||||||||| |||||||||| |||||| ||||||||||| ||||     
T  10344176 aatgtgccaactcatgacctgccacctgtgctccgttagccacaatggatcatttttgttgacaaaagctgacggtaaggaccattttcaaaagcttaag 10344077  T
Q  99 aagatacagggtttattttagnnnnnnnnnncttacagggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaagcc 189  Q
    |||||||| |||||||||||           | ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||    
T  10344076 aagatacaaggtttatttta--caaaaataacatacagggacgaaaacaaaaaatgcacgaacttacatggaccttttacatatttaagcc 10343988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 31 - 190
Target Start/End: Complemental strand, 22054492 - 22054333
Alignment:
Q  31 ctccgttagccaccatgacgtttttgttgacagaagctgacggcaaggactattttcaaaaggttaaaaagatacagggtttattttagnnnnnnnnnnc 130  Q
    ||||||||||||| ||| |||||||||| |||||||||||||||||||||  ||||||||| ||||  |||||||| ||||| ||||||          |    
T  22054492 ctccgttagccacaatggcgtttttgttaacagaagctgacggcaaggacctttttcaaaatgttatgaagatacaaggtttgttttagaaaaaaaaatc 22054393  T
Q  131 ttacagggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaagcct 190  Q
    ||||||||||||||||||||||||  |||||||||| |||||||||||||||||||||||    
T  22054392 ttacagggacgaaaaccaaaaatgcgcgaacttacagggaccttttacatatttaagcct 22054333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 5 - 189
Target Start/End: Original strand, 22060035 - 22060219
Alignment:
Q  5 tgccaactcatgaactgtcacatgtactccgttagccaccatgacgtttttgttgacagaagctgacggcaaggactattttcaaaaggttaaaaagata 104  Q
    |||||||||||   ||| ||| ||| || |||||||||| ||  |||||||||| |||||||||||||||||||||  ||||||||| ||||  ||||||    
T  22060035 tgccaactcattgcctgccacctgtgcttcgttagccacaattgcgtttttgttaacagaagctgacggcaaggacctttttcaaaatgttatgaagata 22060134  T
Q  105 cagggtttattttagnnnnnnnnnncttacagggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaagcc 189  Q
    || ||||| ||||||          |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  22060135 caaggtttgttttagaaaaaaaaatcttacagggacgaaaaccaaaaatgcgcgaacttacatggaccttttacatatttaagcc 22060219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 5 - 186
Target Start/End: Original strand, 10345022 - 10345203
Alignment:
Q  5 tgccaactcatgaactgtcacatgtactccgttagccaccatgacgtttttgttgacagaagctgacggcaaggactattttcaaaaggttaaaaagata 104  Q
    ||||||||||||| ||| ||| ||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||  ||| ||||||||||  || |||    
T  10345022 tgccaactcatgagctgccacgtgtgctccgttagccaccatgacatttttgttgacggaagctgacggcaaggaccttttccaaaaggttagtaaaata 10345121  T
Q  105 cagggtttattttagnnnnnnnnnncttacagggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaa 186  Q
    |||||||| ||||||          ||||||||||||||||| |||||||  | || ||||| ||| | |||||||||||||    
T  10345122 cagggtttgttttagaacaaaaaaacttacagggacgaaaacaaaaaatgcgcaaaattacagggatcatttacatatttaa 10345203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 5 - 190
Target Start/End: Complemental strand, 43516582 - 43516397
Alignment:
Q  5 tgccaactcatgaactgtcacatgtactccgttagccaccatgacgtttttgttgacagaagctgacggcaaggactattttcaaaaggttaaaaagata 104  Q
    ||||||||||||| ||| ||| ||| |||||||||||| |||  ||||||||||||| ||||||||||| ||| ||  ||| ||||||||||  || |||    
T  43516582 tgccaactcatgacctgccacgtgtgctccgttagccagcattgcgtttttgttgacggaagctgacggtaagaaccttttccaaaaggttatcaaaata 43516483  T
Q  105 cagggtttattttagnnnnnnnnnncttacagggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaagcct 190  Q
    |||||||| ||||||          ||||||||||||||||| |||||||  |||| ||||| |||||||||||||||||||||||    
T  43516482 cagggtttcttttagaacaaaaaaacttacagggacgaaaacaaaaaatgcgcgaaattacagggaccttttacatatttaagcct 43516397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 5 - 189
Target Start/End: Original strand, 40128802 - 40128986
Alignment:
Q  5 tgccaactcatgaactgtcacatgtactccgttagccaccatgacgtttttgttgacagaagctgacggcaaggactattttcaaaaggttaaaaagata 104  Q
    ||||||||||||| ||| ||| ||| |||||||||||| |||  |||||| |||||| |||||| |||||||||||  ||| ||||||||||  || |||    
T  40128802 tgccaactcatgacctgccacgtgtgctccgttagccagcattgcgttttcgttgacggaagctaacggcaaggaccttttccaaaaggttatcaaaata 40128901  T
Q  105 cagggtttattttagnnnnnnnnnncttacagggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaagcc 189  Q
    |||||||| ||||||          ||||||||||||||||| |||||||  |||| ||||| ||||||||||||||| ||||||    
T  40128902 cagggtttcttttagaacaaaaaaacttacagggacgaaaacaaaaaatgcgcgaaattacagggaccttttacatatgtaagcc 40128986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 44820799 - 44820990
Alignment:
Q  1 aatgtgccaactcatgaactgtcacatgtactccgttagccaccatgacgtttttgttgacagaagctgacggcaaggactattttcaaaaggttaaaaa 100  Q
    |||||||||||||||||  |  ||| ||| |||||||||| || ||| |||||||||| || ||| || ||||||| ||| |||||||||||||||| ||    
T  44820799 aatgtgccaactcatgacttaccacctgtgctccgttagctacaatggcgtttttgttaacggaaactaacggcaatgaccattttcaaaaggttaagaa 44820898  T
Q  101 gatacagggtttattttag--nnnnnnnnnncttacagggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaagcct 190  Q
    |||||| ||||||||||||            ||||||||||||||||| |||||||  |||| ||||| |||||||||||||||||||||||    
T  44820899 gatacaaggtttattttagaaaaaaaaaaaacttacagggacgaaaacaaaaaatgcgcgaatttacagggaccttttacatatttaagcct 44820990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 36 - 118
Target Start/End: Original strand, 42931681 - 42931763
Alignment:
Q  36 ttagccaccatgacgtttttgttgacagaagctgacggcaaggactattttcaaaaggttaaaaagatacagggtttatttta 118  Q
    |||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| | |||||| |||| ||||||    
T  42931681 ttagccaccatggcgtttttgttgacagaagctgacgacaaggactattttcaaaaggttaagaggatacaaggttcatttta 42931763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 35 - 190
Target Start/End: Original strand, 43517982 - 43518137
Alignment:
Q  35 gttagccaccatgacgtttttgttgacagaagctgacggcaaggactattttcaaaaggttaaaaagatacagggtttattttagnnnnnnnnnncttac 134  Q
    |||||||||||   ||||||| ||||| |||||||||||||| |||  ||||||||||||||  || ||||||||||| ||||||          |||||    
T  43517982 gttagccaccaaagcgtttttattgacggaagctgacggcaatgacctttttcaaaaggttatcaaaatacagggtttgttttagaacaaaaaaacttac 43518081  T
Q  135 agggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaagcct 190  Q
    |||||| ||||||||||||| ||||||||||| ||| | |||| ||||||||||||    
T  43518082 agggaccaaaaccaaaaatgcacgaacttacagggatcatttaaatatttaagcct 43518137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 8 - 191
Target Start/End: Complemental strand, 44819950 - 44819767
Alignment:
Q  8 caactcatgaactgtcacatgtactccgttagccaccatgacgtttttgttgacagaagctgacggcaaggactattttcaaaaggttaaaaagatacag 107  Q
    ||||||||||| || ||  ||| ||||||||||||||||| ||||||||||||| ||||||||||||||||||  ||| ||||||||||  ||  || ||    
T  44819950 caactcatgaaatgccatgtgtgctccgttagccaccatggcgtttttgttgactgaagctgacggcaaggaccttttccaaaaggttagcaaagtagag 44819851  T
Q  108 ggtttattttagnnnnnnnnnncttacagggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaagccta 191  Q
    ||||| ||||||           |||||||||| |||| ||||||||   ||| ||| | ||||| ||||||||||||||||||    
T  44819850 ggtttgttttagaacaaaaaaatttacagggacaaaaatcaaaaatgcgtgaaattatagggaccatttacatatttaagccta 44819767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 31 - 187
Target Start/End: Complemental strand, 40127398 - 40127242
Alignment:
Q  31 ctccgttagccaccatgacgtttttgttgacagaagctgacggcaaggactattttcaaaaggttaaaaagatacagggtttattttagnnnnnnnnnnc 130  Q
    |||||||||||||||   ||||||| ||||| |||| |||||| ||||||  |||||||||| |||  || ||||||||||| ||||||          |    
T  40127398 ctccgttagccaccaaagcgtttttattgacggaagttgacggtaaggacctttttcaaaagattatcaaaatacagggtttgttttagaacaaaaaaac 40127299  T
Q  131 ttacagggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaag 187  Q
    |||||||||| ||||| |||| ||  |||||||||| ||||| ||||||||||||||    
T  40127298 ttacagggaccaaaacaaaaattgcgcgaacttacagggaccatttacatatttaag 40127242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 132 - 191
Target Start/End: Complemental strand, 28165715 - 28165656
Alignment:
Q  132 tacagggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaagccta 191  Q
    ||||||||| ||||||||||| |  | |||||||||||||||||||||||||||||||||    
T  28165715 tacagggactaaaaccaaaaacgcgctaacttacatggaccttttacatatttaagccta 28165656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 132 - 189
Target Start/End: Original strand, 40304764 - 40304821
Alignment:
Q  132 tacagggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaagcc 189  Q
    |||||||||||||||||||||    |||||||||| ||||||||||||||||||||||    
T  40304764 tacagggacgaaaaccaaaaacacgcgaacttacagggaccttttacatatttaagcc 40304821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 191
Target Start/End: Complemental strand, 40303346 - 40303291
Alignment:
Q  136 gggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaagccta 191  Q
    |||||||||||||||||    |||||||||| ||||||||||||||||||||||||    
T  40303346 gggacgaaaaccaaaaacacgcgaacttacagggaccttttacatatttaagccta 40303291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 191
Target Start/End: Original strand, 45493034 - 45493093
Alignment:
Q  132 tacagggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaagccta 191  Q
    |||||||||||||||||||||    |||| ||||| ||||||||||||||||||||||||    
T  45493034 tacagggacgaaaaccaaaaacacgcgaatttacagggaccttttacatatttaagccta 45493093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 191
Target Start/End: Original strand, 45500776 - 45500835
Alignment:
Q  132 tacagggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaagccta 191  Q
    |||||||||||||||||||||    |||| ||||| ||||||||||||||||||||||||    
T  45500776 tacagggacgaaaaccaaaaacacgcgaatttacagggaccttttacatatttaagccta 45500835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 136 - 190
Target Start/End: Complemental strand, 45499358 - 45499304
Alignment:
Q  136 gggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaagcct 190  Q
    |||||||||||||||||    |||||||||| |||||||||||||||||||||||    
T  45499358 gggacgaaaaccaaaaacacgcgaacttacagggaccttttacatatttaagcct 45499304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 190
Target Start/End: Original strand, 18224845 - 18224905
Alignment:
Q  130 cttacagggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaagcct 190  Q
    ||||||||||| |||||||||||   || || ||||| |||||||||||||||||||||||    
T  18224845 cttacagggactaaaaccaaaaacacactaaattacagggaccttttacatatttaagcct 18224905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 191
Target Start/End: Original strand, 6844099 - 6844158
Alignment:
Q  132 tacagggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaagccta 191  Q
    |||| ||| ||||||||||||    |||||||||| ||||||||||||||||||||||||    
T  6844099 tacaaggatgaaaaccaaaaacacgcgaacttacaaggaccttttacatatttaagccta 6844158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 191
Target Start/End: Complemental strand, 34591782 - 34591723
Alignment:
Q  132 tacagggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaagccta 191  Q
    |||| |||||||||| ||||||  || |||||||||||||  ||||||||||||||||||    
T  34591782 tacaaggacgaaaacaaaaaatacacaaacttacatggacgatttacatatttaagccta 34591723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 70
Target Start/End: Complemental strand, 42827499 - 42827436
Alignment:
Q  7 ccaactcatgaactgtcacatgtactccgttagccaccatgacgtttttgttgacagaagctga 70  Q
    ||||||||||| ||| ||| ||| ||| ||||||||||||  ||||||||||||| ||||||||    
T  42827499 ccaactcatgacctgccacgtgtgctctgttagccaccatagcgtttttgttgacggaagctga 42827436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 188
Target Start/End: Complemental strand, 44095390 - 44095359
Alignment:
Q  157 cgaacttacatggaccttttacatatttaagc 188  Q
    ||||||||||||||||||||||||||||||||    
T  44095390 cgaacttacatggaccttttacatatttaagc 44095359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 190
Target Start/End: Original strand, 44097355 - 44097413
Alignment:
Q  132 tacagggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaagcct 190  Q
    |||||||||||||||||||||    ||||||||||  ||||||||| ||||||||||||    
T  44097355 tacagggacgaaaaccaaaaacacgcgaacttacagagaccttttatatatttaagcct 44097413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 188
Target Start/End: Original strand, 22060485 - 22060538
Alignment:
Q  135 agggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaagc 188  Q
    ||||||||||||||||||    | |||||||| |||||||||||||||||||||    
T  22060485 agggacgaaaaccaaaaacacgcaaacttacagggaccttttacatatttaagc 22060538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 191
Target Start/End: Original strand, 44492316 - 44492372
Alignment:
Q  135 agggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaagccta 191  Q
    ||||||||||||||||||    | |||||||||||| | ||||||||||||||||||    
T  44492316 agggacgaaaaccaaaaacacgcaaacttacatggatcgtttacatatttaagccta 44492372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 184
Target Start/End: Complemental strand, 44904584 - 44904532
Alignment:
Q  132 tacagggacgaaaaccaaaaatgtacgaacttacatggaccttttacatattt 184  Q
    ||||||||| |||||||||||||  | ||||||||  ||||||||||||||||    
T  44904584 tacagggactaaaaccaaaaatgcgctaacttacaaagaccttttacatattt 44904532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 31 - 191
Target Start/End: Original strand, 4159 - 4318
Alignment:
Q  31 ctccgttagccaccatgacgtttttgttgacagaagctgacggcaaggactattttcaaaaggttaaaaagatacagggtttattttagnnnnnnnnnnc 130  Q
    ||||||||||||| ||| |||||||||| |||||||||||||||||||||  ||||||||| ||||  |||||||| ||||| ||||||          |    
T  4159 ctccgttagccacaatggcgtttttgttaacagaagctgacggcaaggacctttttcaaaatgttatgaagatacaaggtttgttttagaaaaaaaat-c 4257  T
Q  131 ttacagggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaagccta 191  Q
    ||||||||||||||||||||||||  |||||||||| ||||||||||||||||||||||||    
T  4258 ttacagggacgaaaaccaaaaatgcgcgaacttacagggaccttttacatatttaagccta 4318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 4e-31; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 31 - 189
Target Start/End: Original strand, 41593104 - 41593262
Alignment:
Q  31 ctccgttagccaccatgacgtttttgttgacagaagctgacggcaaggactattttcaaaaggttaaaaagatacagggtttattttagnnnnnnnnnnc 130  Q
    |||||||||||||||   ||||||| ||||| ||||||||||||||||||  ||||||||||||||  || ||||||||||| ||||||          |    
T  41593104 ctccgttagccaccaaagcgtttttattgacggaagctgacggcaaggacctttttcaaaaggttatcaaaatacagggtttgttttagaacaaaaaaac 41593203  T
Q  131 ttacagggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaagcc 189  Q
    |||||||||| ||||||||||||| ||||||||||| ||||| ||||||||||||||||    
T  41593204 ttacagggaccaaaaccaaaaatgcacgaacttacagggaccatttacatatttaagcc 41593262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 5 - 190
Target Start/End: Complemental strand, 41591699 - 41591514
Alignment:
Q  5 tgccaactcatgaactgtcacatgtactccgttagccaccatgacgtttttgttgacagaagctgacggcaaggactattttcaaaaggttaaaaagata 104  Q
    ||||||||||||| ||| ||| ||| |||||||||||| |||  ||||||||||||| |||||| ||| ||| |||  ||| ||||||||||  || |||    
T  41591699 tgccaactcatgatctgccacgtgtgctccgttagccagcattgcgtttttgttgacggaagctaacgacaatgaccttttccaaaaggttatcaaaata 41591600  T
Q  105 cagggtttattttagnnnnnnnnnncttacagggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaagcct 190  Q
    |||||||| ||||||          ||||||||||||||||| |||||||  |||| ||||| |||||||||||||||||||||||    
T  41591599 cagggtttcttttagaacaaaaaaacttacagggacgaaaacaaaaaatgcgcgaaattacagggaccttttacatatttaagcct 41591514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 7 - 192
Target Start/End: Original strand, 41385684 - 41385871
Alignment:
Q  7 ccaactcatgaactgtcacatgtactccgttagccaccatgacgtttttgttgacagaagctgacggcaaggactattttcaaaaggttaaaaagataca 106  Q
    ||||||||||| ||| ||| ||  ||||||||||||||||||| ||||||||||| ||||||||||||||||||  ||| ||||||||||  || |||||    
T  41385684 ccaactcatgacctgccacgtgggctccgttagccaccatgacatttttgttgacggaagctgacggcaaggaccttttccaaaaggttatcaaaataca 41385783  T
Q  107 gggtttatttt--agnnnnnnnnnncttacagggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaagcctac 192  Q
    | |||| ||||  |           ||||||||||| ||||| |||||||  |||||||||| ||||| |||||||||||||||||||    
T  41385784 gtgtttgttttaaaacaaaaaaaaacttacagggaccaaaacaaaaaatgcgcgaacttacagggaccatttacatatttaagcctac 41385871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 31 - 190
Target Start/End: Complemental strand, 41384307 - 41384148
Alignment:
Q  31 ctccgttagccaccatgacgtttttgttgacagaagctgacggcaaggactattttcaaaaggttaaaaagatacagggtttattttagnnnnnnnnnnc 130  Q
    |||||||||||||||  || |||||| ||||  |||||||||||||| ||  ||| ||||||||||  || ||||||||||| |||||           |    
T  41384307 ctccgttagccaccaaaacatttttgatgacgaaagctgacggcaagaaccttttccaaaaggttatcaaaatacagggtttgttttaaaacaaaaaaac 41384208  T
Q  131 ttacagggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaagcct 190  Q
    |||||||||| ||||| |||||||  |||||||||| ||||| |||||||||||||||||    
T  41384207 ttacagggaccaaaacaaaaaatgcgcgaacttacaaggaccatttacatatttaagcct 41384148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 132 - 191
Target Start/End: Original strand, 46246577 - 46246636
Alignment:
Q  132 tacagggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaagccta 191  Q
    |||||||||||||||||||||    |||||||||| ||||||||||||||||||||||||    
T  46246577 tacagggacgaaaaccaaaaacacgcgaacttacagggaccttttacatatttaagccta 46246636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 130 - 191
Target Start/End: Complemental strand, 27160364 - 27160303
Alignment:
Q  130 cttacagggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaagccta 191  Q
    ||||||||||||||||||||||    ||||||||||| ||||||||||| ||||||||||||    
T  27160364 cttacagggacgaaaaccaaaatctcacgaacttacaaggaccttttacttatttaagccta 27160303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 130 - 191
Target Start/End: Complemental strand, 37547993 - 37547932
Alignment:
Q  130 cttacagggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaagccta 191  Q
    ||||||||||| ||||||||||| | || |||||||| ||||||||||| ||||||||||||    
T  37547993 cttacagggactaaaaccaaaaacgcaccaacttacaaggaccttttacttatttaagccta 37547932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 189
Target Start/End: Complemental strand, 11669900 - 11669841
Alignment:
Q  130 cttacagggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaagcc 189  Q
    |||||| ||||||||||||||||  | |||||||||| ||||| ||||||||||||||||    
T  11669900 cttacatggacgaaaaccaaaaacatgcgaacttacagggaccgtttacatatttaagcc 11669841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 132 - 190
Target Start/End: Complemental strand, 12178540 - 12178482
Alignment:
Q  132 tacagggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaagcct 190  Q
    |||||||||||||||||||||    |||||||| | |||||||||||||||||||||||    
T  12178540 tacagggacgaaaaccaaaaacacgcgaacttagagggaccttttacatatttaagcct 12178482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 130 - 191
Target Start/End: Original strand, 27161995 - 27162056
Alignment:
Q  130 cttacagggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaagccta 191  Q
    |||||| |||||||||||||||     |||||||||| ||||||||||||||||||||||||    
T  27161995 cttacaaggacgaaaaccaaaatctcgcgaacttacagggaccttttacatatttaagccta 27162056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 136 - 189
Target Start/End: Complemental strand, 46245175 - 46245122
Alignment:
Q  136 gggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaagcc 189  Q
    |||||||||||||||||    |||||||||| ||||||||||||||||||||||    
T  46245175 gggacgaaaaccaaaaacacgcgaacttacagggaccttttacatatttaagcc 46245122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 191
Target Start/End: Original strand, 38758319 - 38758378
Alignment:
Q  132 tacagggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaagccta 191  Q
    ||||||||| ||||||||||| |  | |||||||| ||||||||||| ||||||||||||    
T  38758319 tacagggactaaaaccaaaaacgcgctaacttacagggaccttttacttatttaagccta 38758378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 191
Target Start/End: Complemental strand, 706802 - 706741
Alignment:
Q  130 cttacagggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaagccta 191  Q
    ||||||||||| |||||||||||    | || ||||| ||||||||||||||||||||||||    
T  706802 cttacagggactaaaaccaaaaacacgctaaattacagggaccttttacatatttaagccta 706741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 190
Target Start/End: Original strand, 32429870 - 32429930
Alignment:
Q  130 cttacagggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaagcct 190  Q
    ||||||||||| ||||||||||| |  | |||||||| |||| |||||| |||||||||||    
T  32429870 cttacagggactaaaaccaaaaacgcgccaacttacagggactttttacttatttaagcct 32429930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0280 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0280
Description:

Target: scaffold0280; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 191
Target Start/End: Complemental strand, 12188 - 12129
Alignment:
Q  132 tacagggacgaaaaccaaaaatgtacgaacttacatggaccttttacatatttaagccta 191  Q
    |||||||||||||||||||||    |||||||||  | ||||||||||||||||||||||    
T  12188 tacagggacgaaaaccaaaaacacgcgaacttaccggaaccttttacatatttaagccta 12129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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