View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9757_high_2 (Length: 560)
Name: NF9757_high_2
Description: NF9757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9757_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 494; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 20 - 546
Target Start/End: Complemental strand, 53096611 - 53096085
Alignment:
| Q |
20 |
gtggaaaggtaagaaactaaaaattcatgcttagtattgttgttttgcatgattaagaagtttttcatcatagttgatgcactccactcaaatgcctatt |
119 |
Q |
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| T |
53096611 |
gtggaaaggtaagaaactaaaaattcatgcttagtattgttgttttgcatgattaagaagtttttcatcatagttgatgctctccactcaaatgcctatt |
53096512 |
T |
|
| Q |
120 |
agttgtttccaataataaatgtttaatgacaatgcagatttccgaacctgttgttcataaaaagtcatggaagagttgtgcagctcatgttcacattagt |
219 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53096511 |
agttgtttccaataataaatgtttaatgacgatgcagatttccgaacctgttgttcataaaaagtcatggaagagttgtgcagctcatgttcacattagt |
53096412 |
T |
|
| Q |
220 |
cagctcatccggagtttagaagttccnnnnnnncatggtgccaaagaacccgagcgttatgaatgtcaccaacccagagtacaccaaggatcaaagtgtg |
319 |
Q |
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| T |
53096411 |
cagctcatccggagtttagaagttccaaaaaaacatggtgccaaagaacccgagcgttatgaatgtcaccaacccagagtacaccaaggatcaaagtgtg |
53096312 |
T |
|
| Q |
320 |
gagttctaatcaaagcacaaaactcaaatgggactagaaatggaaatagttttgatgttggaacagttcattctgctagtttggacatttttcctgaaac |
419 |
Q |
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| T |
53096311 |
gagttctaatcaaagcacaaaactcaaatgggacgagaaatggaaatagttttgatgttggaacagttcattctgctagtttggacatttttcctgaaac |
53096212 |
T |
|
| Q |
420 |
taaaaatggtattcttcagcagcagtgccattatcttgacatatctctctctaaggatcctccgatgcctgcaaaatgtgatcctctaaagcaagtaagc |
519 |
Q |
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| T |
53096211 |
taaaaatggtattcttcagcagcagtgccattatcttgacatatctctctctaaggatcctccgatgcctgcaaaatgtgatcctctaaagcaagtaagc |
53096112 |
T |
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| Q |
520 |
ttatgaatgcttttggtaatgatgtcc |
546 |
Q |
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| T |
53096111 |
ttatgaatgcttttggtaatgatgtcc |
53096085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 258 - 407
Target Start/End: Original strand, 1369335 - 1369483
Alignment:
| Q |
258 |
tgccaaagaacccgagcgttatgaatgtcaccaacccagagtacaccaaggatcaaagtgtggagttctaatcaaagcacaaaactcaaatgggactaga |
357 |
Q |
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|||||||||| | ||||||||||||||||||||| ||||||| |||||| ||||||| ||| | | |||||||||||||||||||| ||||||| ||| |
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| T |
1369335 |
tgccaaagaatctgagcgttatgaatgtcaccaaaccagagttcaccaaagatcaaaatgtata-tcctaatcaaagcacaaaactctaatgggatgaga |
1369433 |
T |
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| Q |
358 |
aatggaaatagttttgatgttggaacagttcattctgctagtttggacat |
407 |
Q |
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| T |
1369434 |
aatggaaatagttttgatgctggaacagttcatactactagtttggacat |
1369483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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