View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9757_high_7 (Length: 394)
Name: NF9757_high_7
Description: NF9757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9757_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 338; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 7 - 392
Target Start/End: Complemental strand, 7415952 - 7415567
Alignment:
| Q |
7 |
gtgccaagtttaacctaattaagtatgttttgttgtgctagctcaatgaatccatcgatttaagagatacacaaattagttttagaagacagacgaaaat |
106 |
Q |
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| T |
7415952 |
gtgccaagtttaacctaattaagtatgttttgttgtgctagctcaatgaatccatcgatttaagagatacacaaattagttttagaagacagacgaaaat |
7415853 |
T |
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| Q |
107 |
tactggcatatacaactctaaattttgctcttgttaaatgggttggtccgaccctgacacattttaacgatttaaattttttcatgtgctaacttatttg |
206 |
Q |
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| T |
7415852 |
tactagcatatacaactctaaattttgctcttgttaaatgggttggtccga-cctgacacattttaacgatttaaattttttcatgtgctaacttatttg |
7415754 |
T |
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| Q |
207 |
ttatgta-nnnnnnncctcaggacttaattgccggagggacggagagctcagcagtaacagtagaatgggcaatctccgagctggttagaaaaccagaga |
305 |
Q |
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| T |
7415753 |
ttatgtattttttttcctcaggacttaattgccggagggacggagagctccgcagtaacagtagaatgggcaatctccgagctggttagaaaaccagaga |
7415654 |
T |
|
| Q |
306 |
tcttcaagaaagcaaccgaggagctagatagagtgataggaaaagatagatgggttgaagagaaagacattgcgaatttaccctatg |
392 |
Q |
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| T |
7415653 |
tcttcaagaaagcaaccgaggagctagatagagtgataggaaaagatagatgggttgaagagaaagacattgcgaatttaccttatg |
7415567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 258 - 392
Target Start/End: Complemental strand, 7423360 - 7423226
Alignment:
| Q |
258 |
cagtaacagtagaatgggcaatctccgagctggttagaaaaccagagatcttcaagaaagcaaccgaggagctagatagagtgataggaaaagatagatg |
357 |
Q |
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| T |
7423360 |
cagtaacagtagaatgggcaatctccgagcttgtgaaaaagccagagattatcaagagagctacggaggaactagacaaagtaataggaagagatagatg |
7423261 |
T |
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| Q |
358 |
ggttgaagagaaagacattgcgaatttaccctatg |
392 |
Q |
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| T |
7423260 |
ggttgaagagaaagacattgtcaatttaccttatg |
7423226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 267 - 392
Target Start/End: Complemental strand, 7429760 - 7429635
Alignment:
| Q |
267 |
tagaatgggcaatctccgagctggttagaaaaccagagatcttcaagaaagcaaccgaggagctagatagagtgataggaaaagatagatgggttgaaga |
366 |
Q |
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||||||||||||| || ||||| || | || |||||||| |||||| ||| || ||||| ||||||||||| ||||| | |||||||||||||||||| |
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| T |
7429760 |
tagaatgggcaatttctgagcttgtgaaaaggccagagattatcaagagagctacagaggaactagatagagtaatagggagagatagatgggttgaaga |
7429661 |
T |
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| Q |
367 |
gaaagacattgcgaatttaccctatg |
392 |
Q |
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||||||||||| |||||||| |||| |
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| T |
7429660 |
gaaagacattgtcaatttaccttatg |
7429635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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