View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9757_high_9 (Length: 301)
Name: NF9757_high_9
Description: NF9757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9757_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 256; Significance: 1e-142; HSPs: 10)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 36 - 291
Target Start/End: Original strand, 35889658 - 35889913
Alignment:
| Q |
36 |
ttacattccatagttactttcttgattttgattcttcttgtgaccaaacaatggagaaggatcttaagaacgtgacacaaaagatgatcggttctacgac |
135 |
Q |
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| T |
35889658 |
ttacattccatagttactttcttgattttgattcttcttgtgaccaaacaatggagaaggatcttaagaacgtgacacaaaagatgatcggttctacgac |
35889757 |
T |
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| Q |
136 |
tgatcagaaagatgatgcagcaatgaacgagggaggcactggtagtgattcttcaactactgatctgaaagagattagtggtggtgatgatgcagcaatg |
235 |
Q |
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| T |
35889758 |
tgatcagaaagatgatgcagcaatgaacgagggaggcactggtagtgattcttcaactactgatctgaaagagattagtggtggtgatgatgcagcaatg |
35889857 |
T |
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| Q |
236 |
aatccggaaggcgtaaaaatggaggaggatcatcagaaagaaagtggtggtgatgt |
291 |
Q |
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| T |
35889858 |
aatccggaaggcgtaaaaatggaggaggatcatcagaaagaaagtggtggtgatgt |
35889913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 36 - 284
Target Start/End: Complemental strand, 35554681 - 35554445
Alignment:
| Q |
36 |
ttacattccatagttactttcttgattttgattcttcttgtgaccaaacaatggagaaggatcttaagaacgtgacacaaaagatgatcggttctacgac |
135 |
Q |
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| T |
35554681 |
ttacattccatagttactttcttgattttgattcttcttgtgaccaaaaaatggagaagaatcttgagaatgaggcacaaaagatgattggttctacgac |
35554582 |
T |
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| Q |
136 |
tgatcagaaagatgatgcagcaatgaacgagggaggcactggtagtgattcttcaactactgatctgaaagagattagtggtggtgatgatgcagcaatg |
235 |
Q |
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| T |
35554581 |
tgatcagaaagatgatgcagcaatgaatgagggaggcactggtagtgattcttcaactactgatcagaaa------------ggtgatgatgtagcaatg |
35554494 |
T |
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| Q |
236 |
aatccggaaggcgtaaaaatggaggaggatcatcagaaagaaagtggtg |
284 |
Q |
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| T |
35554493 |
aatcagggaagctcaaaaatggaggaggatcatcagaaagaaagtggtg |
35554445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 134 - 190
Target Start/End: Original strand, 34989588 - 34989644
Alignment:
| Q |
134 |
actgatcagaaagatgatgcagcaatgaacgagggaggcactggtagtgattcttca |
190 |
Q |
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| T |
34989588 |
actgatcagaaagatgatgcatcaatgaatgaggcaggcactggtagtgattcttca |
34989644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 141 - 207
Target Start/End: Original strand, 34989537 - 34989601
Alignment:
| Q |
141 |
agaaagatgatgcagcaatgaacgagggaggcactggtagtgattcttcaactactgatctgaaaga |
207 |
Q |
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| T |
34989537 |
agaaagatgatgcatcaatgaatgagggaggcac--gtagtgattcttcaagcactgatcagaaaga |
34989601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 144 - 207
Target Start/End: Original strand, 35890051 - 35890114
Alignment:
| Q |
144 |
aagatgatgcagcaatgaacgagggaggcactggtagtgattcttcaactactgatctgaaaga |
207 |
Q |
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| T |
35890051 |
aagatgatgtagcattgaatgagggaggcactggcagtgattcttcaacttctcatcagaaaga |
35890114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 139
Target Start/End: Original strand, 35890238 - 35890314
Alignment:
| Q |
66 |
attcttcttgtgaccaaacaatggagaaggatcttaagaacgtgacac---aaaagatgatcggttctacgactgat |
139 |
Q |
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| T |
35890238 |
attcttcttgtgaccaaaaaatggagaagcatcttaagaacgaggcaccgaaaaagatgatcagttccactactgat |
35890314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 206
Target Start/End: Original strand, 35889924 - 35889984
Alignment:
| Q |
146 |
gatgatgcagcaatgaacgagggaggcactggtagtgattcttcaactactgatctgaaag |
206 |
Q |
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| T |
35889924 |
gatgatgtaacagtgaatgagggaggcattggcagtgattcttcaactactgatcagaaag |
35889984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 144 - 227
Target Start/End: Complemental strand, 35554444 - 35554361
Alignment:
| Q |
144 |
aagatgatgcagcaatgaacgagggaggcactggtagtgattcttcaactactgatctgaaagagattagtggtggtgatgatg |
227 |
Q |
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| T |
35554444 |
aagattatgtagcattgaatgagggaggcactggcagtaattcttcaacttctcatcagaaagatgttagtagtggcgatgatg |
35554361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 153
Target Start/End: Complemental strand, 16231441 - 16231403
Alignment:
| Q |
115 |
aaagatgatcggttctacgactgatcagaaagatgatgc |
153 |
Q |
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| T |
16231441 |
aaagatgaccggttccacgactgatcagaaagatgatgc |
16231403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 282
Target Start/End: Original strand, 35890016 - 35890048
Alignment:
| Q |
250 |
aaaaatggaggaggatcatcagaaagaaagtgg |
282 |
Q |
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| T |
35890016 |
aaaaatggaggagaatcatcagaaagaaagtgg |
35890048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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